LOCUS X08038 7538 bp DNA linear BCT 18-APR-2005 DEFINITION Methanobacterium thermoautotrophicum rpoT, rpoU, rpoV and rpoX genes for RNA polymerase subunits A, B', B'' and C. ACCESSION X08038 VERSION X08038.1 KEYWORDS RNA polymerase; rpoT gene; rpoU gene; rpoV gene; rpoX gene. SOURCE Methanothermobacter thermautotrophicus ORGANISM Methanothermobacter thermautotrophicus Archaea; Euryarchaeota; Methanomada group; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter. REFERENCE 1 (bases 1 to 7538) AUTHORS Klein A. JOURNAL Submitted (04-JUL-1988) to the INSDC. Klein A., Molekular Genetik, Philipps Universitait , Molekulargenetik, FB Biologie, Postfach 1929, D-3550 Marburg, FRG. REFERENCE 2 (bases 1 to 7538) AUTHORS Berghoefer B., Kroeckel L., Koertner C., Truss M., Schallenberg J., Klein A. TITLE Relatedness of archaebacterial RNA polymerase core subunits to their eubacterial and eukaryotic equivalents JOURNAL Nucleic Acids Res. 16(16), 8113-8128(1988). PUBMED 2843811 COMMENT The sequence overlaps with that reported by Schallenberg et al.in J.Bacteriol.170:2247-2253, 1988. FEATURES Location/Qualifiers source 1..7538 /organism="Methanothermobacter thermautotrophicus" /strain="Winter" /mol_type="genomic DNA" /db_xref="taxon:145262" regulatory 69..73 /note="rRNA binding site" /regulatory_class="ribosome_binding_site" CDS 80..1627 /transl_table=11 /note="RNA polymerase subunit B'' (AA 1-515)" /db_xref="GOA:P09844" /db_xref="InterPro:IPR007642" /db_xref="InterPro:IPR007644" /db_xref="InterPro:IPR007645" /db_xref="InterPro:IPR015712" /db_xref="UniProtKB/Swiss-Prot:P09844" /protein_id="CAA30836.1" /translation="MKKSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPI ELEQGQYTVETGKVTIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEMRLLKEGG SETEFEKVHIGELPVMLKSEICHLHGLGRDELIEKGEDPADLGGYFIVNASERSIVTM EEIAPNKIILERIGEEDEKRARAIVTSIRSGFRARISLEYRKPRKTGVFLRISFPYVP GELPLVILLRALGLATDQEIITSISDDFNYQMIAADDIQVSLDKLKLDSDKMEEEMDE EERREYLIRSAIKYIGNRVAKGMTEDYRIKRAEDVIDRYLLPHIGTEPDKRLEKAVYL AEMTEMLLQVISGERKPHDKDHYTNKRLRVSGDLMEDLFRVAFTSLTRDMSYRLERSL ARGKEPSVKQAVRSDVLSENLKHAIATGNWVGGRAGVSQLLDRTSYMGTLSHMRRVVS PLSRSQPHFEARDLHPTQFGKICPNETPESPNCGLVKNLALMAKISEGSDPDEIEEVI KKMGVIN" regulatory 1640..1644 /note="rRNA binding site" /regulatory_class="ribosome_binding_site" CDS 1652..3466 /transl_table=11 /note="RNA polymerase subunit B' (AA 1-604)" /db_xref="GOA:P09845" /db_xref="InterPro:IPR007120" /db_xref="InterPro:IPR007121" /db_xref="InterPro:IPR007641" /db_xref="InterPro:IPR007646" /db_xref="InterPro:IPR007647" /db_xref="InterPro:IPR014724" /db_xref="InterPro:IPR015712" /db_xref="InterPro:IPR019969" /db_xref="InterPro:IPR037033" /db_xref="UniProtKB/Swiss-Prot:P09845" /protein_id="CAA30837.1" /translation="MNKTKIYINGKLIGTCDNPEEFVEEIRAKRRSGEVSHEMNITHY PENHEIYIFTDPGRARRPLIIVEDGEPLLKEEHLEKLSSGEMEWDDLISQGIIEYLDA EEEENTYIAMSPEEVTEEHTHLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQA LGLYASNYNLRTDTRAHLLHHPQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNM EDALILNKASLERGLARSSFFRSYEATERRYPGGQEDRFEIPEKGVRGYRSERDYRHL DEDGIINPETEVSSGDVLIGKTSPPRFLEEIDEFGTVAERRRETSVTVRHGEEGIVDA VLLTETVEGSRLAKIRVREQRQPEFIGDKFASRHGQKGVVGLIVSQEDMPFTEDGVVP DLIVNPHAIPSRMSVGQVLEMLAGKAACMEGRRVDGTPFTGEEEKDLKEALKANGFES AGVETLYNGITGERIEAEIFIGVAYYQKLHHMTTDRIYARSRGPVQVLTRQPTEGRAR EGGLRFGEMERDCLIAHGAALALKERLLDESDKYEALVCAECGMIAIYDKIRDKKYCP ICEDSESFPVEISYAFKLLLDELKSLCIFPKLVLEDKA" regulatory 3493..3496 /note="rRNA binding site" /regulatory_class="ribosome_binding_site" CDS 3505..6102 /transl_table=11 /note="RNA polymerase subunit A? (AA 1-865)" /db_xref="GOA:P09846" /db_xref="InterPro:IPR000722" /db_xref="InterPro:IPR006592" /db_xref="InterPro:IPR007066" /db_xref="InterPro:IPR007080" /db_xref="InterPro:IPR007081" /db_xref="InterPro:IPR007083" /db_xref="InterPro:IPR012758" /db_xref="InterPro:IPR038120" /db_xref="InterPro:IPR042102" /db_xref="UniProtKB/Swiss-Prot:P09846" /protein_id="CAA30838.1" /translation="MRGILKKISQINFGLMSPEDIRKMSVAQIVTPDTYDEDGYPIEN ELMDPRLGVIGSSLRCRSCGAKGGECPGHFGSINLARPVIHVGFADTIHKILSSICRK CSRILLTETEIQDYRQRILEAMEREESLTPIIKEIYAEARRDRCPHCEEEQEEIKLDK PVSIVEGDYKLTPSEVRERLERITDNDSLLLGVNPEVARPEWMVLTVLPVPPVTVRPS ITLETGERSEDDLTHKLVDILRINQRLKENMEAGAPQLIVEDLWELLQYHVTTYFDNE ASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVVSPDPNVSVNEVG VPELIAKEVTVPVYVTEWNIDRMKEHIENGPDVHPGANYVIRPDGRKIRAYNETKDVV LENLKPGYIVERHLKDGDIVLFNRQPSLHRMSMMAHEVRVLPYKTFRLNLCVCPPYNA DFDGDEMNMHVFQTEESRAEAKTLMRVQDHILSPRFRDLSSGVYTTISQEHTSSQGKR LFSVRSRPPDPQEGRAPPPDREGREWTVKEIFSMVLPDDLNMVYLAEICRKCDECLEM DWENDAYVVIENGQLITGVIDEKAYGAFAGKILDQIVKEYGSDAAKEFLDSATKLAIA GIMHAGFTTSTNDEEIPEEAKERIEAHLRNAEARVDQLIEAYENGELEPLPGRSLEET LEMKIMQVLGEAKDKSGEIAESYFDMDENHAVIMALTGARGAMLNLTQITACVGQQSV HGGRITRGYDNRTLPHFKKGELGAKSRGFVHSSYKEDSILLEFMGGREGLVDTAIRTA QSGYMQRRLVNALQDLTVDENGRVVDNRGVIIQTRFGEDGVDPAKSDYGKIVDLDKLV QEIRLKSGK" regulatory 6110..6116 /note="rRNA binding site" /regulatory_class="ribosome_binding_site" CDS 6120..7469 /transl_table=11 /note="RNA polymerase subunit C (AA 1-449)" /db_xref="GOA:P09847" /db_xref="InterPro:IPR007081" /db_xref="InterPro:IPR012757" /db_xref="UniProtKB/Swiss-Prot:P09847" /protein_id="CAA30839.1" /translation="MQDVIKKIEDYSSRNGIMLPNPVTEYVAGIAEEEKLKDPELHDL VRLFSRICERNRGLEGEELLKAVEDEYLRILKVRELVKRKRAKFPPRLIEEIAEAIKR HGLSDDELDELVRGVRRAYERAMVEAGEAVGTVAAQSVGEPGTQMTMRTFHYAGVAEL NVTLGLPRLIEIVDARKKISTPTMSIYFEGDRKYDEEFVRKKANKICKSTLNDVLKNF SIQYADMSVEAELDEEKIREKHLEYDDIIAKVEKTFKKVEIDNNILRFEPPKPTIREL RLLADKVRKLQISGVKNIGKVVIRKEDDEWVIHTEGSNLGDRFKEEGVDKVRTTTNDI HEIETVLGIEAARNAIIHEAKRTMEEQGLTVDIRHIMLVADMMTADGSVKSIGRHGIS GEKASVLARASFEETGKHLLRASIRGEVDHLTGIIENIIIGQPIPLGTGSVSVIMKK" BASE COUNT 2261 a 1769 c 2064 g 1444 t ORIGIN 1 cgttcaggac tgattttcca gattaagata gggccggcat gataattatt catcatttaa 61 tttgttttgg aggaagtcca tgaaaaaaag tgcatgggga ttggtagacg cgttttttga 121 taagtacgac ctggtggacc accacatcca ttcatacaac gactttgtga gtaacaggat 181 acaggaaata atagacacca gcgaacctat agaacttgaa cagggccaat acaccgttga 241 gaccgggaag gttaccatcg aaaagccctt cataaaggag gctgatggtt ccaagagcaa 301 gatataccct acagaggcaa ggctaaggaa cctgacctac tccgcccata tgagccttga 361 aatgaggctc ctcaaggagg gcggctccga gacagaattc gagaaggtcc acatcggtga 421 actgcctgtt atgctcaaat cagagatatg ccacctgcat ggtctcggaa gagatgaact 481 cattgaaaag ggcgaggacc cggcagacct tggaggctac ttcatcgtca atgcatcaga 541 gaggtccatt gtaacaatgg aggagatagc ccccaacaag ataatccttg aaaggatagg 601 tgaagaggat gagaagaggg caagggccat cgtcacatcc ataaggagcg gtttcagggc 661 aagaatatcc ctcgagtaca ggaagccccg gaagacaggc gtcttcctaa ggatatcgtt 721 cccctacgtc ccgggagaac ttccacttgt aatcctcctg agggcactgg gccttgcaac 781 cgaccaagag atcatcacaa gcatatcaga tgacttcaac tatcagatga tagctgcaga 841 cgacatccag gtatcccttg acaagctgaa acttgacagc gataaaatgg aagaagaaat 901 ggatgaagaa gagagaaggg aatacctcat aagaagcgcc ataaaataca tcggtaaccg 961 cgttgccaag ggcatgaccg aggattaccg tataaaaagg gccgaggatg ttattgaccg 1021 ttatctttta ccgcacatag gaacagaacc cgataagaga cttgaaaagg cagtgtacct 1081 tgctgagatg acagagatgc tcctgcaggt catctcaggg gagcgcaaac cccacgacaa 1141 ggaccactac acaaacaagc gcctcagggt atcaggagac ctcatggagg acctcttcag 1201 ggttgccttc acaagcctaa ccagggatat gagctaccgg ctcgagagga gccttgcaag 1261 gggaaaggaa ccctctgtaa agcaggccgt gagatccgac gtcctgagcg aaaacctgaa 1321 gcacgccatc gcaacaggta actgggtcgg tggaagggca ggtgtgagcc agctactgga 1381 caggacaagt tacatgggta cactctccca tatgaggagg gttgtatcac cactgagcag 1441 gagccagccc cacttcgagg caagggacct tcacccgaca cagttcggta agatctgccc 1501 caacgagacc cctgaaagtc cgaactgtgg tcttgtcaag aacctcgccc tcatggccaa 1561 gatatccgag ggctcagacc ctgatgaaat tgaagaagtc atcaaaaaaa tgggggttat 1621 taactaattt tttccaccgg gaggctgtta cgtgaataaa accaagatct acattaatgg 1681 aaaacttata ggaacctgcg acaatcctga agaatttgtt gaggagatac gggctaagag 1741 aaggtccgga gaagtatccc atgaaatgaa cataacccac taccctgaaa accatgagat 1801 atacatcttc acggatcccg ggagggccag aagacccctg atcatcgtgg aggacggcga 1861 acccctcctc aaggaggaac accttgaaaa actcagctcc ggtgaaatgg aatgggacga 1921 cctcatatca caggggatta tagagtacct tgacgccgag gaggaggaga acacctacat 1981 agcaatgagc cccgaggagg tcacagagga acatacccac cttgaaattg acccgtcaac 2041 catgctgggt atctgtgcag ggatcatacc gttcgcaaac cacaactcat ccccaaggaa 2101 caccatggag gcggggatga caaaacaggc ccttggtctc tacgcatcaa actataacct 2161 ccgtacggat acacgcgccc acctcctcca ccacccccag gtccccatag tcaagacaag 2221 gataatcgac gtgacaggct acgatgaaag gccatccggt cagaacttcg tggtggcagt 2281 catgtcctac gagggctaca acatggagga cgccctcatc ctcaacaagg catcccttga 2341 aaggggcctt gcaaggtcat catttttcag gtcatatgag gcaacggaac gcagataccc 2401 cggggggcag gaggaccgct tcgagatacc tgagaagggt gtccggggtt accgttcaga 2461 gagggactac aggcaccttg acgaggacgg tataatcaac ccagaaacag aggtgtcatc 2521 aggcgatgtg ctcatcggta aaacatcacc gccccgtttc cttgaagaga tcgatgaatt 2581 tggaacggtt gcagagagaa gacgtgaaac atcggtaacc gtgaggcacg gggaagaggg 2641 aatcgttgac gccgttctcc tcacagaaac cgttgaggga agcagacttg ccaagataag 2701 ggtgcgtgaa cagagacagc cagaattcat cggtgacaag ttcgcatcaa ggcacggtca 2761 gaagggggtt gtgggcctca tagtatcaca ggaggacatg cccttcacag aggacggtgt 2821 tgtacccgac ctcatagtga acccccacgc cataccctca aggatgtcgg tgggacaggt 2881 ccttgagatg cttgcaggta aggccgcctg catggagggg cggcgcgtgg acggaacacc 2941 cttcaccggt gaggaagaga aggacctgaa ggaagccctg aaggccaacg gatttgaaag 3001 tgcaggtgtt gaaacactct acaacggcat aaccggggaa aggatagagg ccgagatatt 3061 cataggcgtt gcatactacc agaaacttca ccacatgaca acagacagga tatacgcgcg 3121 ttcaaggggt ccggtgcagg tccttacaag acaacccaca gagggaaggg cgagggaagg 3181 aggtctcaga ttcggtgaaa tggaaaggga ctgtctgatc gcccatggag cagctctggc 3241 cctgaaagag aggcttcttg atgaatcaga caagtacgag gccctcgtat gtgccgaatg 3301 tggtatgata gccatctacg acaagatcag ggacaagaag tactgtccaa tatgtgagga 3361 ctctgaatca ttccctgtgg agatctcata cgcattcaaa ttactcctag acgagcttaa 3421 aagtctatgc atcttcccaa agcttgtact tgaagataag gcatgataat ggatttaagg 3481 gaataaacca aaggagagaa taccttgaga ggaattttaa agaaaatttc ccagataaac 3541 tttgggctca tgtcccctga ggatataagg aagatgtccg tggcccagat agtgacaccg 3601 gacacctatg acgaggacgg gtaccccatc gagaacgagc tcatggatcc aaggttaggg 3661 gttataggtt caagtctaag gtgcagaagc tgcggtgcca agggtggtga gtgccccggg 3721 cactttggaa gcataaacct tgcaaggccc gtgatccatg ttggttttgc agacaccata 3781 cacaagatac tcagttccat ctgcaggaaa tgcagcagga tactcctgac ggaaacagaa 3841 atccaggact accggcagag gatacttgaa gccatggaga gggaggaaag cctcacaccc 3901 ataataaagg agatatacgc agaggcaaga cgtgacaggt gcccccactg tgaggaggaa 3961 caggaagaaa taaaacttga caaaccggtt tcaatcgttg agggcgacta caagctaaca 4021 ccaagtgaag tcagggagcg ccttgagagg ataaccgaca atgattccct tctcctcgga 4081 gtcaacccgg aggttgcaag acccgaatgg atggtcctca ccgtactccc ggtccccccg 4141 gttaccgtga gaccatcaat caccctggag acaggtgaaa ggtcagagga cgacctcacc 4201 cataaactcg ttgatatcct caggataaac cagcgcctca aggagaacat ggaggccgga 4261 gcgccccagc tcatcgttga ggacctctgg gagctcctcc agtaccatgt gacaacctac 4321 ttcgacaacg aggcatcagg agtgccgcct gcaaggcaca ggtcaggaag gcccctcaag 4381 accctggccc agagactgaa gggtaaggag ggtcgtttca ggagcaacct ttcaggtaaa 4441 agggttaact tctcagcccg tacagtcgtg tcccctgacc ccaacgtaag cgtgaacgag 4501 gtgggcgtcc ctgaactgat agcaaaggag gtcacggtac cggtctatgt caccgagtgg 4561 aacatagacc gcatgaagga gcacatagaa aacggaccgg acgtccaccc cggcgcaaac 4621 tacgttataa gacccgacgg ccggaagata agggcctaca atgagacaaa ggatgttgtg 4681 ctggaaaacc tcaaacccgg ctacatagtt gaaaggcacc tcaaggacgg ggacatagtg 4741 ctcttcaacc gtcagccatc actccacagg atgtcaatga tggcccatga ggtcagggtc 4801 ctcccctaca agaccttccg tctaaacctc tgcgtctgcc ccccatacaa cgctgacttt 4861 gacggtgacg agatgaacat gcacgtgttc cagacagaag agtcccgtgc agaggccaag 4921 accctcatgc gtgtccagga tcatatcctt tcaccaaggt tccgcgacct atcatcgggg 4981 gtatacacga ccatatctca ggagcatacc tcctcacaag gaaaaaggct gttttcagtg 5041 aggagcaggc ctccagatcc tcaagaaggc agggctcccc ctcccgacag ggagggccgc 5101 gagtggacag ttaaggaaat attcagcatg gtcctcccgg acgacctcaa catggtttac 5161 ctggcggaga tctgcaggaa atgtgacgaa tgccttgaga tggactggga aaacgacgcc 5221 tacgttgtca tagagaacgg tcagctgata acaggtgtca ttgacgagaa ggcctacgga 5281 gcatttgcag gtaagatact tgaccagata gtgaaggagt atggaagcga cgccgccaag 5341 gaattcctcg actccgccac aaaactggct attgccggta taatgcatgc aggtttcacc 5401 accagtacca acgatgagga gatccctgag gaggccaagg aacgcataga ggcccatctc 5461 aggaatgctg aggcccgtgt agaccagctc atcgaggcat atgagaacgg tgaactcgaa 5521 cccctccccg gaaggagcct tgaggaaacc ctcgagatga agataatgca ggtcctcggt 5581 gaggccaagg acaagtcagg ggagattgca gagagctact ttgacatgga cgagaaccac 5641 gcggttataa tggcacttac aggtgcaagg ggtgccatgc ttaacctgac gcagataacc 5701 gcatgtgtcg gtcagcagtc tgtccatggt ggtcgtataa caagggggta cgacaacagg 5761 acgcttcccc acttcaagaa gggagaactc ggtgctaagt cacgtggatt cgtgcactca 5821 agttacaagg aggactcgat tctattggaa ttcatgggtg gaagggaagg tcttgtggac 5881 accgccatcc gtacagccca gagcggttac atgcagaggc gtcttgtgaa cgccctccag 5941 gacctcacgg tggatgagaa tggaagggtc gttgacaaca ggggagttat catacagacc 6001 cgcttcggtg aggatggcgt ggacccggcg aagagtgatt acggtaagat agttgacctt 6061 gacaaactcg tgcaggagat aaggcttaaa tcagggaagt gaaggggtaa ggtgattctg 6121 tgcaggacgt tattaaaaag atagaggatt actcctccag gaacgggatt atgctcccga 6181 accctgtcac cgaatacgtg gcagggattg ctgaggagga aaaactgaag gaccccgagc 6241 tccatgacct tgtaaggctc ttcagcagga tatgtgagag aaacaggggc cttgaaggag 6301 aagaactgtt aaaggccgtg gaggatgaat acctcaggat actgaaggtc agggaactcg 6361 tcaaaaggaa gagggccaag ttccccccaa ggctcattga agagatagct gaagcaataa 6421 aaaggcacgg cctcagtgac gatgaactcg atgaacttgt aaggggtgtc agaagggcct 6481 atgaacgtgc catggttgag gccggtgaag ccgttggtac agtggccgcc cagtcagtcg 6541 gtgaaccagg tacccagatg acgatgcgta ccttccacta tgcaggggtg gctgagctca 6601 acgttacact cggtctcccc aggctcatcg agatagtgga tgccaggaag aagatatcca 6661 ccccaacaat gagcatatac tttgaaggcg acaggaaata cgatgaggag ttcgtgagga 6721 aaaaggccaa taagatatgt aagagcaccc tcaacgatgt ccttaaaaat ttcagcatcc 6781 agtatgccga catgtcagtt gaagcagaac tggatgagga gaaaatccgt gaaaaacacc 6841 ttgaatatga tgatataata gccaaggtgg aaaaaacttt taagaaagta gaaatagata 6901 acaacatact gagatttgaa cccccaaaac caaccataag ggagctcaga ctgcttgcag 6961 ataaagtaag gaaactccag ataagcgggg ttaaaaatat aggcaaggtg gttatccgta 7021 aagaggatga tgaatgggta atccatacag agggttcaaa ccttggagac cgttttaaag 7081 aagagggtgt agataaggtt aggacgacca ccaacgacat tcatgagata gaaacagtcc 7141 ttggtataga ggcagccaga aacgcgataa ttcacgaagc aaagagaacc atggaggaac 7201 agggtctcac cgtggacata agacatataa tgctcgttgc agatatgatg actgccgatg 7261 gttctgtcaa gtccattgga agacatggta ttagcggtga gaaagcgagc gtccttgcaa 7321 gggcttcttt tgaagaaacc gggaaacacc ttctaagagc aagtatcagg ggagaggtcg 7381 atcatctcac cggtattata gagaacatta ttatagggca acccataccc ctgggtacag 7441 gttccgttag cgttataatg aaaaaatagg aggcagtaga tggacataga tagaggaata 7501 cgagtcgctg tagatactgg taatgttatt cttggatc //