LOCUS X07870 5130 bp DNA linear INV 14-NOV-2006 DEFINITION Drosophila melanogaster bicoid gene bcd. ACCESSION X07870 VERSION X07870.1 KEYWORDS bcd gene; bicoid gene; developmental regulation; homeobox. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 5130) AUTHORS Berleth T., Burri M., Thoma G., Bopp D., Richstein S., Frigerio G., Noll M., Nuesslein-Vollhard C. TITLE The role of localization of bicoid RNA in organizing the anterior pattern of the Drosophila embryo JOURNAL EMBO J. 7(6), 1749-1756(1988). PUBMED 2901954 REFERENCE 2 AUTHORS Macdonald P.M., Struhl G. TITLE cis-acting sequences responsible for anterior localization of bicoid mRNA in Drosophila embryos JOURNAL Nature 336(6199), 595-598(1988). PUBMED 3143913 COMMENT see x14458 - x14460 for alternate spliced bcd mRNAs FEATURES Location/Qualifiers source 1..5130 /organism="Drosophila melanogaster" /chromosome="3" /strain="Oregon R." /mol_type="genomic DNA" /db_xref="taxon:7227" exon <1416..1580 /number=1 CDS join(1416..1580,2140..2215,2256..3214,3728..4012) /gene="bcd" /db_xref="GOA:P09081" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR017970" /db_xref="PDB:1ZQ3" /db_xref="UniProtKB/Swiss-Prot:P09081" /protein_id="CAA30720.1" /translation="MAQPPPDQNFYHHPLPHTHTHPHPHSHPHPHSHPHPHHQHPQLQ LPPQFRNPFDLLFDERTGAINYNYIRPYLPNQMPKPDVFPSEELPDSLVMRRPRRTRT TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHK DQSYEGMPLSPGMKQSDGDPPSLQTLSLGGGATPNALTPSPTPSTPTAHMTEHYSESF NAYYNYNGGHNHAQANRHMHMQYPSGGGPGPGSTNVNGGQFFQQQQVHNHQQQLHHQG NHVPHQMQQQQQQAQQQQYHHFDFQQKQASACRVLVKDEPEADYNFNSSYYMRSGMSG ATASASAVARGAASPGSEVYEPLTPKNDESPSLCGIGIGGPCAIAVGETEAADDMDDG TSKKTTLQILEPLKGLDKSCDDGSSDDMSTGIRALAGTGNRGAAFAKFGKPSPPQGPQ PPLGMGGVALGESNQYQCTMDTIMQAYNPHRNAAGNSQFAYCFN" misc_feature 1448..1538 /note="PRD repeat sequence" intron 1581..2139 /number=1 exon 2140..2215 /number=2 intron 2216..2270 /number=2 intron 2216..2255 /number=2 /note="alternate" exon 2256..3214 /number=3 exon 2271..3214 /number=3 /note="alternate" misc_feature 2303..2482 /note="homeo box" intron 3215..3727 /number=3 exon 3728..4808 /number=4 misc_difference 4649..4649 /note="t is g in [2]" /note="conflict" /citation=[2] BASE COUNT 1510 a 1188 c 1012 g 1420 t ORIGIN 1 gtcgactgga gtgtctgtga attgactttt gttgccagtt ggcagcggca gaagcagcaa 61 agcccggcca acagcaacaa gctcctgcca gatcccaaaa gcaaacacga caattatttg 121 gcaaatgtca ttaaaaaata tttcacttaa ggccttgcga cacttgctta aaggtcaact 181 ggctcgttgg gtgtgtttta aaatgttaaa gcttgggcca atgcactgag caacttaatg 241 cttgtagata tttacacaat attcttcaac gctaaacata tcgaattttc caaatatgga 301 gcctgaaaat aataattgcc aatcctagct taaaatcaga aatgagtaga acaacttaaa 361 aaaattaaca aaagaatcga acgctacagc taattaactc gacaactggt taccttttat 421 tcttctaata cattttataa tgcactgcct aacaggtaca gatagcaagc actatatgct 481 gtcttacaaa acgattatat gatattttct ttcgtacgta gccgtttgag atcatttgga 541 aaaacaaact cgatctccac catccttatt ctttgtccca agtccttata tatctcgcga 601 tactaagatt gaataatgta gttattaata gcggaagtat gtaacagaat aaactacaaa 661 gtgcacattt tgttcaattc aggctggact ggactggagc atattaatat tataatatta 721 acaaaaattc aaattaaaca ttcgacactt gtctaattga ttcctaaatt tggggtgcct 781 gtttgttaat taaatgttaa tattatgaag ttccaaacag agcaaagagt ttaagtttaa 841 ttggttctac ttatttgtta caatattcaa gcttttttta ttattattct caaatgcaaa 901 tctctacaaa taaataaacc tccgacgttt tagaacattc accttttgtc agtgagcaca 961 acctttcaat acagcccgac agggggctct ctactgctgt ctcttcacgc cccctggtga 1021 aaacgctgtg cactcaatcg gtttgcagct ttgccgtact gttcgattaa aaacttttaa 1081 attagaggca aacatttaaa aataaaatgt ccaaatattt gtctaaaatg tattgtagac 1141 gcttattgat ttttaaatta ctcaaaagaa tgttcatcga gggagggccg ccaattgtgc 1201 catctctaca tctcttcgct catccctaaa taacggcact ctgcagatgc gaagcagtgg 1261 atcgcaaaaa cgcaaaatgt gggcgaaata agttcgcgag cgtctcgaaa gtaaccggtt 1321 actgaaaata caagaaagtt tccacactcc tttgccattt ttccgcgcgg cgcttggaaa 1381 ttcgtaaaga taacgcggcg gagtgtttgg ggaaaatggc gcaaccgccg ccagatcaaa 1441 acttttacca tcatccgctg ccccacacgc acacacatcc gcatccgcac tcccatccgc 1501 atccgcactc gcatccgcac ccacatcacc aacatccgca gcttcagttg ccgccacaat 1561 tccgaaatcc cttcgatttg gtgagttccc atcgcagcag agaagggctc ttgtcccagg 1621 aaagctacag tacagattcc ctatggtgaa caaacaacca gtgcgatcac tgatgaccat 1681 aaacatttat tgagccgcag caaatgtgtt tctagaacat agggcgaaat cttctattat 1741 cttgtttgtg acttttaaag tatcgtagca gaatctaaat aacaattgat attattaatc 1801 gttacagtta gtatagtata taattgtata tgaattgtgg ggcaacatgt tattagtgat 1861 ttgccgaaat gttctaaaag atgtttcatt gaaatggacg aatgttaaac ctgttgcact 1921 cacaccgaat atcagtaatg tctatttttc aaaagccaca tctatggcca ctgggtatac 1981 attattgact taatacactt catacaacat attttcaaaa acaagcattg ttgtcctgca 2041 tgatgattag tgaaagtaat attgcaagat tcggtccccg aagcgaatcg tcctttcacg 2101 tttttatata aagacagtgt accccttgat tctttgaagc ttttcgatga gcgaacggga 2161 gcgataaact acaactacat acgtccgtat ctgcccaacc agatgcccaa gccaggtgag 2221 ctcaaagcca acaaagtcag ccatcgtctt atcagatgtc tttccctcag aggagctgcc 2281 cgactctctg gtgatgcggc gaccacgtcg cacccgcacc acttttacca gctctcaaat 2341 agcagagctg gagcagcact ttctgcaggg acgatacctc acagcccccc gacttgcgga 2401 tctgtcagcg aaactagccc tgggcacagc ccaggtgaag atatggttta agaaccgtcg 2461 gcgtcgtcac aagatccaat cggatcagca caaggaccag tcctacgagg ggatgcctct 2521 ctcgccgggt atgaaacaga gcgatggcga tccccccagc ttgcagactc ttagcttggg 2581 tggaggagcc acgcccaacg ctttgactcc gtcacccacg ccctcaacgc ccactgcaca 2641 catgacggag cactacagcg agtcattcaa cgcctactac aactacaatg gaggccacaa 2701 tcacgcccag gccaatcgtc acatgcacat gcagtatcct tccggagggg ggccaggacc 2761 tgggtcgacc aatgtcaatg gcggccagtt cttccagcag cagcaggtcc ataatcacca 2821 gcagcaactg caccaccagg gcaaccacgt gccgcaccag atgcagcagc agcaacagca 2881 ggctcagcag cagcaatacc atcactttga cttccagcaa aagcaagcca gcgcctgtcg 2941 cgtcctggtc aaggacgaac cggaggccga ctacaacttc aacagctcgt actacatgcg 3001 atcgggaatg tctggcgcca ctgcatcggc atccgctgtg gcccgaggcg ctgcctcgcc 3061 gggctccgag gtctacgagc cattaacacc caagaatgac gaaagtccga gtctgtgtgg 3121 catcggcatc ggcggacctt gcgccatcgc cgttggcgag acggaggcgg ccgacgacat 3181 ggacgacgga acgagcaaga agacgacgct acaggtcagg catgagtcca caaccttttt 3241 tgatctcttg attctgagtg tggcgtttat aaattgaagc tttaagcttt gtaactttca 3301 aactgtctgg tttgagatgt tattctgaaa gtacttctat ttccgatcga tgagatttgg 3361 gagttcttca atatttaaca tttaacttat taagtttttg ttttctaaat tagacatggc 3421 atttctgaaa gggaagtaca agtgttaaag atgtatttta atatagaatt tgtatcaaag 3481 gttaagattt caaccgtttg aaagccctta gttttcaggg ttttttactt ttttattcat 3541 gtaatcactc ttaatacact gcaagttaaa atagcatttc tttgaccaga aaaataagaa 3601 tctatgcatt ttaaaagtga aaacagactc atatgctgat gaacattttt agctataaat 3661 tgtaacaata atttagcaat ttcaattgaa tttatttatg ttctaaatgc gttcgctctc 3721 tccctagatc ttggagcctt tgaagggtct ggacaagagc tgcgacgatg gcagtagcga 3781 cgacatgagc accggaataa gagccttagc aggaaccgga aatcgtggag cggcatttgc 3841 caaatttggc aagccttcgc ccccacaagg ccctcagccg cccctcggga tggggggcgt 3901 ggccctgggc gaatcgaacc aatatcaatg cacgatggat acgataatgc aagcgtataa 3961 tccccatcgg aacgccgcgg gcaactcgca gtttgcctac tgcttcaatt agcctggacg 4021 agaggcgtgt tagagagttt cattagcttt aggttaacca ctgttgttcc tgattgtaca 4081 aataccaagt gattgtagat atctacgcgt agaaagttag gtctagtcct aagatccgtg 4141 taaatggttc ccagggaagt tttatgtact agcctagtca gcaggccgca cggattccag 4201 tgcatatctt agtgatactc cagttaactc tatactttcc ctgcaatacg ctattcgcct 4261 tagatgtatc tgggtggctg ctccactaaa gcccgggaat atgcaaccag ttacatttga 4321 ggccatttgg gcttaagcgt attccatgga aagttatcgt cccacatttc ggaaattata 4381 ttccgagcca gcaagaaaat cttctctgtt acaatttgac atagctaaaa actgtactaa 4441 tcaaaatgaa aaatgtttct cttgggcgta atctcataca atgattaccc ttaaagatcg 4501 aacatttaaa caataatatt tgatatgata ttttcaattt ctatgctatg ccaaagtgtc 4561 tgacataatc aaacatttgc gcattctttg accaagaata gtcagcaaat tgtattttca 4621 atcaatgcag accatttgtt tcagattctg agattttttg ctgccaaacg gaataactat 4681 catagctcac attctattta catcactaag aagagcattg caatctgtta ggcctcaagt 4741 ttaattttaa aatgctgcac ctttgatgtt gtctctttaa gctttgtatt tttaattacg 4801 aaaatatata agaactactc tactcgggta aattgtgact aactacacat aactacatac 4861 ttagcccata tttccgtccc tttctagaat gaacgaaaac agtatctggt tttcccgaaa 4921 atcttatgaa tttaaaaatg cactttattg cacatactca cacatgcctg ccataaaata 4981 tgattcgcga tttttccgcg aacacccgcg gatcataaaa catttgcacc agctgcctgt 5041 gtttattcac ctacctgaaa cccatactct tatcgcctga tcctcgcgcg gtcgcactat 5101 ttaggtagac actgtacagg cagcactagc //