LOCUS X05925 4737 bp DNA linear BCT 23-OCT-2008 DEFINITION Cyanobacterium Synechococcus 6301 DNA for ATP synthase subunits (EC 3.6.1.34). ACCESSION X05925 VERSION X05925.1 KEYWORDS ATP synthetase beta-subunit; ATP synthetase epsilon-subunit; inverted repeat; unidentified reading frame. SOURCE Synechococcus elongatus PCC 6301 ORGANISM Synechococcus elongatus PCC 6301 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus. REFERENCE 1 (bases 1 to 4737) AUTHORS Cozens A.L., Walker J.E. TITLE The organization and sequence of the genes for ATP synthase subunits in the cyanobacterium Synechococcus 6301. Support for an endosymbiotic origin of chloroplasts JOURNAL J. Mol. Biol. 194(3), 359-383(1987). PUBMED 3041005 FEATURES Location/Qualifiers source 1..4737 /organism="Synechococcus elongatus PCC 6301" /mol_type="genomic DNA" /db_xref="taxon:269084" CDS complement(<1..900) /transl_table=11 /note="URF 3 (AA 1-300)" /db_xref="GOA:P12834" /db_xref="InterPro:IPR001844" /db_xref="InterPro:IPR002423" /db_xref="InterPro:IPR018370" /db_xref="InterPro:IPR027409" /db_xref="InterPro:IPR027410" /db_xref="InterPro:IPR027413" /db_xref="UniProtKB/Swiss-Prot:P12834" /protein_id="CAA29360.1" /translation="MAKRIIYNENARRALEKGIDILAEAVAVTLGPKGRNVVLEKKFG APQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAVVKEG LRNVAAGANAILLKRGIDKATNFLVEQIKSHARPVEDSKSIAQVGAISAGNDFEVGQM IADAMDKVGKEGVISLEEGKSMTTELEVTEGMRFDKGYISPYFATDTERMEAVFDEPF ILITDKKIGLVQDLVPVLEQVARAGRPLVIIAEDIEKEALATLVVNRLRGVLNVAAVK APGFGDRRKAMLEDIAVLTGGQLI" regulatory complement(907..909) /note="pot. rRNA binding site (URF 3)" /regulatory_class="ribosome_binding_site" CDS complement(948..1259) /transl_table=11 /note="URF 4 (AA 1-103)" /db_xref="GOA:P07889" /db_xref="InterPro:IPR011032" /db_xref="InterPro:IPR018369" /db_xref="InterPro:IPR020818" /db_xref="InterPro:IPR037124" /db_xref="UniProtKB/Swiss-Prot:P07889" /protein_id="CAA29361.1" /translation="MAAVSLSVSTVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQ VGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGNDDYVLLSEKDILAVV A" regulatory complement(1273..1276) /note="pot. rRNA binding site (URF 4)" /regulatory_class="ribosome_binding_site" regulatory 1508..1510 /note="pot. rRNA binding site (beta subunit)" /regulatory_class="ribosome_binding_site" CDS 1522..2976 /transl_table=11 /note="beta-subunit (AA 1-484)" /db_xref="GOA:P07890" /db_xref="InterPro:IPR000194" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR004100" /db_xref="InterPro:IPR005722" /db_xref="InterPro:IPR020003" /db_xref="InterPro:IPR024034" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR036121" /db_xref="UniProtKB/Swiss-Prot:P07890" /protein_id="CAA29362.1" /translation="MVTTTEKTNIGYIRQVIGPVVDVEFPAGKLPQIYNALVIKGKNE AGQDLSVTCEVQQLLGDRKVRAVSMSTTDGLVRGLEVIDTGAPISVPVGEATLGRIFN VLGEPVDELGPVNAATTSPIHRDAPKLTDLETKPKVFETGIKVIDLLAPYRQGGKIGL FGGAGVGKTVLIQELINNIAKEHGGVSVFGGVGERTREGNDLYQEFKESGVIDEKNIA NSKVALVYGQMNEPPGARMRVGLSALTMAEHFRDVNKQDVLLFIDNIFRFVQAGSEVS ALLGRMPSAVGYQPTLGTDVGQLQERITSTLEGSITSIQAVYVPADDLTDPAPATTFA HLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPSIVGEEHYRTARAVQSTLQRYKELQ DIIAILGLDELSEEDRQTVARARKIEKFLSQPFFVAEVFTGSPGKYVKLEDTISGFNR ILNGELDDLPEQAFYLVGDIQEAIEKGAKLKAES" regulatory 3041..3044 /note="pot. rRNA binding site (epsilon-subunit)" /regulatory_class="ribosome_binding_site" CDS 3047..3460 /transl_table=11 /note="epsilon-subunit (AA 1-137)" /db_xref="GOA:P0A2Z9" /db_xref="InterPro:IPR001469" /db_xref="InterPro:IPR020546" /db_xref="InterPro:IPR020547" /db_xref="InterPro:IPR036771" /db_xref="UniProtKB/Swiss-Prot:P0A2Z9" /protein_id="CAA29363.1" /translation="MSLTVRVIAPDRTVWDAPAQEVILPSTTGQLGILPGHAPLLSAL DTGVLRVRADKEWLAIAVLGGFAEVENNEVTVLVNAAERGDKIDLEEARAAFSQADER LKGVKEDDRQGKFQATQAYRRARARLQAAGGLVSV" regulatory 3542..3574 /note="pot. stem-loop structure pot. transcription terminator" /regulatory_class="terminator" repeat_region 3542..3556 /note="inverted repeat A" repeat_region 3561..3574 /note="inverted repeat A'" regulatory 3682..3705 /note="pot. stem-loop structure; pot. transcription terminator" /regulatory_class="terminator" repeat_region 3682..3690 /note="inverted repeat B" repeat_region 3697..3705 /note="inverted repeat B'" regulatory 3715..3736 /note="pot. stem-loop structure; pot. trancscription terminator" /regulatory_class="terminator" repeat_region 3715..3722 /note="inverted repeat C" repeat_region 3729..3736 /note="inverted repeat C'" CDS complement(3856..>4737) /transl_table=11 /note="VRF 5 (293 AA)" /db_xref="GOA:P07893" /db_xref="InterPro:IPR001757" /db_xref="InterPro:IPR006121" /db_xref="InterPro:IPR008250" /db_xref="InterPro:IPR017969" /db_xref="InterPro:IPR018303" /db_xref="InterPro:IPR023214" /db_xref="InterPro:IPR023298" /db_xref="InterPro:IPR023299" /db_xref="InterPro:IPR027256" /db_xref="InterPro:IPR036163" /db_xref="InterPro:IPR036412" /db_xref="UniProtKB/Swiss-Prot:P07893" /protein_id="CAA29364.1" /translation="DPDRLLQWAAALEADSRHPLATALQTAAQAANLAPIAASDRQQV PGLGVSGTCDGRSLRLGNPTWVQVATAKLPTGSAAATSIWLADDQQLLACFWLQDQPR PEAAEVVQALRSRGATVQILSGDRQTTAVALAQQLGLESETVVAEVLPEDKAAAIAAL QSQGDAVAMIGDGINDAPALATAAVGISLAAGSDIAQDSAGLLLSRDRLDSVLVAWNL SQMGLRTIRQNLTWALGYNVVMLPLAAGAFLPAYGLALTPAIAGACMAVSSLAVVSNS LLLRYWFRRSLNHSVSV" BASE COUNT 999 a 1312 c 1402 g 1024 t ORIGIN 1 gatcagttga ccaccagtca ggacagcaat gtcttccagc atggctttgc ggcgatcgcc 61 gaaaccaggc gctttgactg cagcaacgtt gagcacgcca cgcagacggt tgacgaccaa 121 ggtggcgagg gcttctttct cgatgtcctc ggcgatgatc accagcggac ggccagcgcg 181 agccacttgc tccagcacgg gcaccaagtc ttgaaccaaa ccgattttct tgtcggtgat 241 caagatgaag ggctcgtcaa agacggcttc catccgctcg gtgtcggtgg caaagtaggg 301 cgagatgtag cccttgtcga aacgcatccc ttcggtgacc tccagttcgg tggtcatcga 361 tttgccttct tccagcgaga tgacgccttc tttgccgact ttgtccatag catcggcgat 421 catttggccg acttcaaagt cgttgccagc cgagattgca ccgacttggg cgatcgactt 481 ggagtcttcg accggacgag cgtgggactt gatttgctca accaagaagt tggtggcttt 541 gtcgatcccg cgcttcagca aaatggcgtt agcgccagca gccacgttac gcagaccttc 601 tttgaccaca gcgtgcgcca agacggttgc ggtggtggtg ccgtcaccgg ctgcgtcgtt 661 ggttttggaa gcggcttgac gaatcagcgc cacaccggtg ttttcgatgt ggtcttccag 721 ttcgatttct ttggcgatcg tcacaccgtc attgatgatt tgcggtgcgc cgaacttttt 781 ctcaagaaca acgttgcgac ctttggggcc gagggtgact gcaacggctt ccgccagaat 841 gtcgatgcct ttttcaaggg cgcgacgggc gttttcgttg taaatgatcc gtttagccat 901 ggtgatctct taaggaatgt cctgaagggc agtgaaagga agaaagccta ggcaacaacg 961 gccaagatgt ctttctcgga cagcaacacg tagtcgtcgt tgccgagttt gatgtcagta 1021 ccggcgtact tggagtagag aactttgtcg ccgattttga cttcaggcgc ttggcggctg 1081 ccgtcgtcgt tgcgtttgcc agggccaact gccacgattt cgccgacttg gggcttctct 1141 ttagcgttat cgggcaggat gatgccgcca gcagtttttt cttcggcttc agcgactttc 1201 acaaaaacgc gatcgcccag gggcgtcacg gtcgaaacac tcagagatac agctgccata 1261 gttttgagta aacgtcgtca cggggagagg gcaaccggga tgatccgcat ggattagcac 1321 tcccagtacc tgagtgctaa tgtacgggcc gccttctcgg agggcaacgc gacctcagta 1381 cgggttcccg aactcggcga tcgcaggaat gggaatcttg ctgcgggaag gtgcagcctt 1441 cggtgatacg ctggactgtg gcaaaatcgc cctcctgaca gttgtcgcgc tcgcgaagca 1501 ctcatctgga aacgcgcaag catggtcacc actactgaga agacaaatat tggctacatc 1561 cggcaggtca tcggccctgt cgtcgacgta gagttccctg cgggcaaatt gccgcagatc 1621 tacaacgcgc ttgtcatcaa gggcaaaaac gaagccggtc aagacctgtc ggtgacctgt 1681 gaagtgcaac agcttctggg cgatcgcaag gttcgtgccg tttcgatgag cacgactgac 1741 gggttggttc gtggtttgga agtcatcgac actggcgctc cgatcagcgt gccggtcggt 1801 gaagccaccc tcggccgtat cttcaacgtc ctcggcgaac cggtggacga actgggcccg 1861 gtcaacgctg cgacaacctc gccgattcac cgcgatgctc cgaaactgac ggacttggag 1921 accaagccca aagtttttga aaccggcatt aaggtcatcg acttgctggc tccctatcgt 1981 cagggcggca aaatcggcct gttcggcggt gccggtgttg gcaaaaccgt cttgatccaa 2041 gagctgatca acaacattgc gaaagaacac ggcggtgtgt cggtgttcgg cggcgtgggt 2101 gaacgcaccc gcgaaggcaa tgacctctac caagagttca aagagtcggg cgttatcgac 2161 gagaaaaata tcgccaactc gaaagtggcc ttggtctatg gtcagatgaa cgagccgccc 2221 ggggcacgga tgcgtgtcgg tctgtcggcg ttgaccatgg cggagcactt ccgcgacgtc 2281 aacaagcaag acgtgttgct gttcatcgac aacatcttcc gcttcgtgca agccggttcg 2341 gaagtgtcgg cactactagg gcggatgcct tctgcggtgg gctatcaacc gaccttgggc 2401 accgacgttg gtcagctgca agagcggatc acctcaaccc ttgaaggttc catcacctcg 2461 atccaagcgg tctacgttcc tgcggacgac ttgactgacc cggcaccagc taccaccttt 2521 gcccacttgg acgcaaccac tgtgttgtct cggggtctgg cttcgaaagg gatctatccg 2581 gcggttgacc cgttggattc gacctcgacg atgctgcaac cctcgatcgt gggtgaagag 2641 cactaccgga cggcgcgtgc ggtgcagtcg accctgcaac gctacaaaga gctgcaagac 2701 atcatcgcga tcttgggctt ggatgagctg tcggaagaag accgtcagac cgtggcacgg 2761 gctcgtaaga tcgagaagtt cctgtcgcaa cccttcttcg tggctgaagt gtttaccggt 2821 tcgcctggta agtacgtgaa gctggaagac acgatcagtg gcttcaaccg catcctcaac 2881 ggcgagttgg atgacctgcc ggagcaagcc ttctacttgg tgggcgatat ccaagaagcc 2941 atcgaaaaag gcgccaagct gaaagctgaa tcctaggttt ggctgacttt ggtggggttg 3001 cgatcgcagc cccgcctcct gtttttgtcc ctaaatctcc gcgaccatga gcctgactgt 3061 ccgcgtcatt gctcccgacc gaacggtttg ggacgcgcct gcccaagaag tcattctgcc 3121 tagcaccacc ggtcaactcg gtatcttgcc gggtcacgcc cctttgctct ctgccttgga 3181 caccggtgtg ttgcgggtgc gagctgacaa agagtggctg gcgatcgctg ttttaggcgg 3241 cttcgctgaa gttgaaaaca acgaagttac ggtgttggtc aacgctgctg aacggggcga 3301 caagatcgac ctcgaagaag cccgtgccgc ctttagtcag gctgatgaac gcttgaaagg 3361 cgtcaaagaa gacgatcgcc aaggcaagtt ccaagcaacg caagcctacc gtcgggcacg 3421 ggcacgcttg caggctgcgg gtggtctagt cagcgtttga tcctgaatgc cttcttaagt 3481 ttgcagaggc tgcgatcgct gggctcctaa gctaggcgag caatacctcc ttactgcgtc 3541 taaaaccgct ggttcccaga gagctagcgg ttttccttat ggagcgatcg cagtctggaa 3601 caacagtcat ttagcaatca gcaagccagt tgggaagatt cggcttggta tggattggtt 3661 tggggtcaaa agcctctgtc cgtgggggtg attgcgcacc cccacaccca cgcactgggg 3721 gactcgactc ccccagcccc ccgcaacaag atttcgggta ggactcatcg gtggagaagc 3781 gatcgcagcg ggtaaaacta gctggtgttg acctctggtg agggggaagt cagggccgga 3841 aacgttctgg aggattcaga cagaaactga atggttgagc gatcgccgga accagtagcg 3901 cagcaatagc gaattactaa caacggcgag ggaactgaca gccatacaag ccccggcgat 3961 cgcgggggtc agtgctagac cgtaggccgg caagaaggca cccgctgcca aaggcaacat 4021 caccacgttg tagcccagcg cccaagttag gttttggcga atcgtccgca gtcccatttg 4081 gctcaaattc caagccacca gaacgctatc aaggcgatcg cggctgagca gtaagcccgc 4141 actgtcttgg gcaatgtcgc tgccggcggc cagactgatc ccgactgcgg cagtcgcaag 4201 ggcgggtgcg tcattaatgc catcaccgat catggccaca gcatcgcctt gtgattggag 4261 agcagcaatc gccgccgctt tatcttcggg cagcacttct gcaactacag tctccgattc 4321 aagtccaagc tgctgagcga gggccacggc tgttgtttgg cgatcgccac taaggatttg 4381 cacggttgcc ccccgcgatc gcagggcttg gacaacttct gccgcttcgg ggcgcggttg 4441 atcttgcagc cagaagcagg ccaggagttg ctgatcatca gccagccaga ttgatgttgc 4501 agcagcagaa ccagtcggta acttggctgt agcgacttgt acccaagtgg gattgcccag 4561 acgcagtgat cgcccgtcac aagtcccgct gacgcccaaa cccggcactt gctggcgatc 4621 gctggctgcg atcggtgcca gattcgctgc ctgagctgct gtttgtaggg cggtcgccag 4681 aggatgtcga ctatcagctt ctaaggcagc ggcccattgc aggaggcgat cgggatc //