LOCUS X02302 1900 bp DNA linear BCT 18-APR-2005 DEFINITION Plasmid NR1 (E.coli) replication control region. ACCESSION X02302 VERSION X02302.1 KEYWORDS origin of replication; plasmid. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 1900) AUTHORS Womble D.D., Sampathkumar P., Easton A.M., Luckow V.A., Rownd R.H. TITLE Transcription of the replication control region of the IncFII R-plasmid NR1 in vitro and in vivo JOURNAL J. Mol. Biol. 181(3), 395-410(1985). PUBMED 2580099 FEATURES Location/Qualifiers source 1..1900 /organism="Escherichia coli" /plasmid="NR1" /strain="plasmid NR1" /mol_type="genomic DNA" /db_xref="taxon:562" regulatory 23..28 /note="-35 region (Pc)" /regulatory_class="promoter" regulatory 46..52 /note="-10 region (Pc)" /regulatory_class="promoter" misc_feature 58..1546 /note="RNA-CX" misc_feature 58..440 /note="RNA-C" regulatory 80..85 /note="pot. ribosome binding site" /regulatory_class="ribosome_binding_site" CDS 90..344 /transl_table=11 /note="pot. repA2 peptide" /db_xref="GOA:P03847" /db_xref="InterPro:IPR019661" /db_xref="UniProtKB/Swiss-Prot:P03847" /protein_id="CAA26165.1" /translation="MSQTENAVTSSSGAKRAYRKGNPLSDAEKQRLSVARKRASFKEV KVFLEPKYKAMLMQMCHEDGLTQAEVLTALIKSEAQKRCM" regulatory 361..366 /note="-35 region (Pa)" /regulatory_class="promoter" regulatory 384..390 /note="-10 region (Pa)" /regulatory_class="promoter" misc_feature 397..1546 /note="RNA-A" regulatory 401..405 /note="pot. ribosome binding site" /regulatory_class="ribosome_binding_site" CDS 411..>438 /transl_table=11 /note="pot. repAX peptide" /db_xref="UniProtKB/TrEMBL:Q47410" /protein_id="CAA26166.1" /translation="MAGHAVRWQ" regulatory 436..440 /note="pot. ribosome binding site" /regulatory_class="ribosome_binding_site" CDS 451..636 /transl_table=11 /note="pot. repA3 peptide" /db_xref="GOA:P13946" /db_xref="UniProtKB/Swiss-Prot:P13946" /protein_id="CAA26167.1" /translation="MWIYRSQKSKNPDNLLQLWRVRKDYRGPLKPYSQQFSYAGSIVI CPEKFKTSFCARSFCAL" misc_feature complement(474..564) /note="RNA-E" misc_feature 504..509 /note="inc target" regulatory complement(570..576) /note="-10 region (Pe)" /regulatory_class="promoter" regulatory complement(594..599) /note="-35 region (Pe)" /regulatory_class="promoter" regulatory 641..644 /note="pot. ribosome binding site" /regulatory_class="ribosome_binding_site" CDS 649..1506 /transl_table=11 /note="pot. repA1 peptide" /db_xref="GOA:P03066" /db_xref="InterPro:IPR003446" /db_xref="InterPro:IPR017837" /db_xref="UniProtKB/Swiss-Prot:P03066" /protein_id="CAA26168.1" /translation="MTDLHQTYYRQVKNPNPVFTPREGAGTLKFCEKLMEKAVGFTSR FDFAIHVAHARSRGLRRRMPPVLRRRAIDALLQGLCFHYDPLANRVQCSITTLAIECG LATESAAGKLSITRATRALTFLSELGLITYQTEYDPLIGCYIPTDITFTSALFAALDV SEEAVAAARRSRVVWENKQRKKQGLDTLGMDELIAKAWRFVRERFRSYQTELKSRGIK RARARRDADRERQDIVTLVKRQLTREIAEGRFTANREAVKREVERRVKERMILSRNRN YSRLATASP" misc_feature 1009..1024 /note="lexA site" misc_feature 1033..1047 /note="lexA site" regulatory 1033..1038 /note="-35 region (Pb)" /regulatory_class="promoter" regulatory 1054..1060 /note="-10 region (Pb)" /regulatory_class="promoter" misc_feature 1066..1546 /note="RNA-B" regulatory 1133..1138 /note="pot. ribosome binding site" /regulatory_class="ribosome_binding_site" CDS 1141..1506 /transl_table=11 /note="pot. repA1* peptide" /db_xref="GOA:P03066" /db_xref="InterPro:IPR003446" /db_xref="InterPro:IPR017837" /db_xref="UniProtKB/Swiss-Prot:P03066" /protein_id="CAA26169.1" /translation="MAAARRSRVVWENKQRKKQGLDTLGMDELIAKAWRFVRERFRSY QTELKSRGIKRARARRDADRERQDIVTLVKRQLTREIAEGRFTANREAVKREVERRVK ERMILSRNRNYSRLATASP" misc_feature 1682..1690 /note="dnaA site (ori)" BASE COUNT 492 a 488 c 481 g 439 t ORIGIN 1 gatcttcgtc acaattctca agtcgctgat ttcaaaaaac tgtagtatcc tctgcgaaac 61 gatccctgtt tgagtattga ggaggcgaga tgtcgcagac agaaaatgca gtgacttcct 121 catctggcgc aaaacgagca tacagaaagg ggaatccgct ttctgatgca gagaaacaaa 181 gattatcagt ggcccgtaaa agagcttcgt tcaaggaagt aaaagtattt cttgaaccaa 241 agtataaggc catgctcatg caaatgtgtc atgaagatgg tctgactcag gctgaagttc 301 tgaccgcact gataaaaagt gaagcgcaaa aacgatgcat gtgatgatgg gcttacattc 361 ttgagtgttc agaagattag tgctagatta ctgatcgttt aaggaatttt gtggctggcc 421 acgccgtaag gtggcaagga actggttctg atgtggattt acaggagcca gaaaagcaaa 481 aaccccgata atcttcttca actttggcga gtacgaaaag attaccgggg cccacttaaa 541 ccgtatagcc aacaattcag ctatgcgggg agtatagtta tatgcccgga aaagttcaag 601 acttctttct gtgctcgctc cttctgcgca ttgtaagtgc aggatggtgt gactgatctt 661 caccaaacgt attaccgcca ggtaaagaac ccgaatccgg tgtttacacc ccgtgaaggt 721 gcaggaacgc tgaagttctg cgaaaaactg atggaaaagg cggtgggctt cacttcccgt 781 tttgatttcg ccattcatgt ggcgcatgcc cgttcgcgtg gtctgcgtcg acgcatgcca 841 ccagtgctgc gtcgacgggc tattgatgcg ctcctgcagg ggctgtgttt ccactatgac 901 ccgctggcca accgcgtcca gtgctccatc accacgctgg ccattgagtg cggactggcg 961 acggagtctg ctgccggaaa actctccatc acccgtgcca cccgggccct gacgttcctg 1021 tcagagctgg gactgattac ctaccagacg gaatatgacc cgcttatcgg gtgctacatt 1081 ccgaccgata tcacgttcac atctgcactg tttgctgccc tcgatgtatc agaggaggca 1141 gtggccgccg cgcgccgcag ccgtgtggta tgggaaaaca aacaacgcaa aaagcagggg 1201 ctggataccc tgggcatgga tgaactgata gcgaaagcct ggcgttttgt tcgtgagcgt 1261 tttcgcagtt atcagacaga gcttaagtcc cggggaataa agcgtgcccg tgcgcgtcgt 1321 gatgcggaca gggaacgtca ggatattgtc accctggtga aacggcagct gacgcgcgaa 1381 atcgcggaag ggcgcttcac tgccaatcgt gaggcggtaa aacgcgaagt tgagcgtcgt 1441 gtgaaggagc gcatgattct gtcacgtaac cgtaattaca gccggctggc cacagcttcc 1501 ccctgaaagt gacctcctct gaataatccg gcctgcgccg gaggcttccg cacgtctgaa 1561 gcccgacagc gcacaaaaaa tcagcaccac atacaaaaaa caacctcatc atccagcttc 1621 tggtgcatcc ggccccccct gttttcgata caaaacacgc ctcacagacg gggaattttg 1681 cttatccaca ttaaactgca agggacttcc ccataaggtt acaaccgttc atgtcataaa 1741 gcgccatccg ccagcgttac agggtgcaat gtatctttta aacacctgtt tatatctcct 1801 ttaaactact taattacatt catttaaaaa gaaaacctat tcactgcctg tcctgtggac 1861 agacagatat gcacctccca ccgcaagcgg cgggccccta //