LOCUS X00461 3829 bp DNA linear ROD 14-NOV-2006 DEFINITION Rat gene for alpha-lactalbumin. ACCESSION X00461 VERSION X00461.1 KEYWORDS alpha-lactalbumin; direct repeat; lactalbumin; signal peptide. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 3829) AUTHORS Qasba P.K., Safaya S.K. TITLE Similarity of the nucleotide sequences of rat alpha-lactalbumin and chicken lysozyme genes JOURNAL Nature 308(5957), 377-380(1984). PUBMED 6709045 FEATURES Location/Qualifiers source 1..3829 /organism="Rattus norvegicus" /mol_type="genomic DNA" /db_xref="taxon:10116" misc_feature 479..485 /note="direct repeat" misc_feature 749..757 /note="direct repeat" misc_feature 860..868 /note="direct repeat" misc_feature 1007..1014 /note="direct repeat" misc_feature 1057..1063 /note="direct repeat" misc_feature 1066..1074 /note="direct repeat" misc_feature 1093..1098 /note="direct repeat" misc_feature 1224..1232 /note="consensus-sequence like" exon 1247..1413 /number=1 /note="exon 1 (S1)" exon 1249..1413 /number=1 /note="exon 1 (primer extension)" sig_peptide 1281..1412 /gene="alpha-lactalbumin" CDS join(1281..1413,1755..1913,2343..2418,3435..3546) /product="alpha-lactalbumin" /db_xref="GOA:P00714" /db_xref="InterPro:IPR000545" /db_xref="InterPro:IPR001916" /db_xref="InterPro:IPR019799" /db_xref="InterPro:IPR023346" /db_xref="UniProtKB/Swiss-Prot:P00714" /protein_id="CAA25150.1" /translation="MMRFVPLFLACISLPAFQATEFTKCEVSHAIEDMDGYQGISLLE WTCVLFHTSGYDSQAIVKNNGSTEYGLFQISNRNWCKSSEFPESENICDISCDKFLDD ELADDIVCAKKIVAIKGIDYWKAHKPMCSEKLEQWRCEKPGAPALVVPALNSETPVP" intron 1414..1754 /number=1 exon 1755..1913 /number=2 intron 1914..2342 /number=2 exon 2343..2418 /number=3 intron 2419..3434 /number=3 exon 3435..3762 /number=4 regulatory 3744..3749 /regulatory_class="polyA_signal_sequence" BASE COUNT 903 a 908 c 878 g 1139 t ORIGIN 1 gaattcccat tccgtgtccc aaaccttccc agtcctaggt aggatatgag agatccgcag 61 aggcaacaca tttgctgaat ttctgagccc gaatctcttc ccattcagga gtttctgttc 121 atccaccttg ggtttccaca tcctccgcac gagtttcagt cacactgtgc tatacactgg 181 ttaccctgag cagagcgggc ggggttaaac agagaagagc gcctttgtct ctgaagactt 241 acagataata gccagtggga agacttccag tttttaagtc ttaggtggct tggttaggat 301 ggagacctcg ggagaagtaa aaatcaggct tatgaaatga gcataggtag gtaggaaggc 361 aaagatgacc aagaccacga atgtagcgtt ccatgacagc aaattacagt aatcacttgg 421 tactagtacc cagccttgac ttgcttagag gagatgactg taacagttta cccacgaccc 481 ctttcctgtc tgtggccaac cttggggcta tcaagaacta cttatccaaa aacaatgtta 541 ctatgaaatt gccttgcatt gacacaatgt cttaataaca ccaagaagca tctctggcag 601 tggcgactag gggcagggag cttggcaatt tcttatagga cagctagata ttttacacac 661 aaagctttac cattatccta tcttcctcca taggaagtct tgacatccaa gctgtatttg 721 gctctcatgc caaatgtcac cgtgtcccat ccctttctcc gaggccctcc gctatgagct 781 gccgtatcaa ggggcttcct gaactttgtc ccatggttag gtaggccaga caaacgccat 841 tggtcctagg atatgataaa tccctttcca cattctgtat gtgtttcggg gtaggaatgg 901 agttggctgt ggtcaactgt gttttccaat cacctcactt gtgctgtcct gaagcctcct 961 tgttcctaag gttagggaca tcctgcttcc tagaagcagc cctgaaagaa acaaaggttt 1021 accaaaactg agcgagaagc tggatcattg tagaactata tgggcagaaa acaatacttg 1081 gtattgactg gatataggag gtggggaggg tggcaggatg gagggaagtt ggcaggctcg 1141 gcgtttctat cttggcagaa acttctcgtc atcatcatct tcctagagag aaggcntggt 1201 gctagggcca gaggccttct tcataaataa aagcaggtga agtgagtggg atccacattc 1261 aaggtctggg agcaggcaaa atgatgcgtt ttgttcctct gttcctagcg tgtatttcgc 1321 tgcctgcctt tcaagccaca gagtttacaa aatgtgaggt gtcccacgcc attgaagaca 1381 tggatggcta tcaaggcatc agcttgcttg aatgtaagtt tacacttact tccttgactt 1441 cctctcattt cccaactttc cctcctcctc ctcctcctcc tcctcctcct cctcctcctc 1501 ctcctcctcc tcctcctcct cctcctccgt ggccatagct cttcttgttc tgtcttgatc 1561 tcttcattca acaagttctc cgcccttcct gttctcccat tgttctggcc tttctcgact 1621 ttcgaccaag atgcttctgg actttaccac ctttggagat tggttgggaa gcctcccccc 1681 tgctccaaat tagtttctca attgtgcctc tctgagacat ctctgatgaa agttcttcct 1741 tctgtctccc tcagggacct gtgttttatt ccacaccagt ggctatgact cacaagctat 1801 cgtcaagaac aatggcagca cagagtatgg actcttccag atcagtaaca gaaattggtg 1861 caagagtagc gagttccccg agtcagagaa catctgtgac atctcctgtg acagtgagta 1921 ccctctttca tcatgttctt ctgtatcccc atacctgcct ctgagtcttc caaagcagga 1981 ggagtgctgg gtactgtgtg acttgagatg gcggtgctta gtaagaaact ggtcatgatc 2041 tccgcatgac ccagagagtc ccctgaggct cggggaaggg tagttcaaga cacttgtgag 2101 tcttgaagtc tgatacgctg tattttcagg gtgtgatgaa gctgtcgatt tcttgagagg 2161 tgtcctaggg aaggggatga agtccccagg aaagggaagc attactagat tggccatttc 2221 atatagaaag tctctaggcc aagccttcag ctcagaacca gtccccctga ccgtgggagt 2281 agtggagcca gcccgctgag ctgtatttct tagctgtctt gttccttcct acactccgct 2341 agagttcctt gatgatgagc ttgcggatga catagtatgt gccaagaaga tcgtggctat 2401 caaagggatc gactactggt gagtcattgc ctctgctctc ctctggaggc gctagcactt 2461 ccctttctag gcctttgacg gcgtctccaa aacaaaatcc atctagagtc cgaaaggtct 2521 atatttaaaa tgctcttctg tgtcattctt gtgtgacaac tttcccgata caggaattcc 2581 cctgttggaa agctgacttt cagaactctc tttcctgggc cagttctcag ccttgaagca 2641 cttggtgtgg ttccacatct tttctagatc tgcaacttta ttgattttat cattattatt 2701 gttttgtttt tttaaagaag attttattaa tttattgtac tatgtgcgta cactgtcact 2761 gtcttgagac acaccagaaa aggacattgg atcccattac aggtggttgt gagccaccat 2821 gtggttgctg ggagttgaac cccagcactt aaccactgag ccatctctcc agcccttatt 2881 ttggttttct gaggaggtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt 2941 gtgtgtagca ctggctatct tggatctagc tctgtaagac caagctggcc tcaaactcac 3001 agagtctgct tacttatgcc ttcacagatt aaagtcatag caccaccacc actagcccta 3061 tattattatt attattatta ttattattat tattattatt gttattatta ttttattaat 3121 agtgagctcc attccactga ggagcccttg ccatcgacct cagaatgtct gtatttctct 3181 acaatctttc agctcacact gaggatgaac ctaaatggag ttttatgcta gacattgtta 3241 atcaactgca acatgagaga aagtgtgtgt gtgtgtgtgt gtgtgtgtgt gtctgtgtga 3301 gtgtgtaata actgagcaaa gcacacggat atacatgtat gaaactgtca taatggaacc 3361 cgctatttgg catagtcaag ttaaaaagaa aattccagcc agtccattcg ttttgtccat 3421 ttctccgtga tcaggaaggc tcacaagccc atgtgctctg agaagctgga acagtggcgc 3481 tgtgagaagc cgggagctcc tgcccttgtt gtccctgccc tgaattcaga aacacctgtt 3541 ccctaagcta cctcagtttg gctctttcta tcgtgaagat gatctgtctc tgagccttgt 3601 atcctgtagt gacaccatcg gactctagag gacttttgtt caacaggagt gcgactggca 3661 cactggactg caaacccttg cttagtgacg gcgagggtct tgatggtggt tttactaatg 3721 caagagaacc ctctcctgtc ccaaataaag ggcccaattt gatgttctct gttggtgttt 3781 tctttctata gggcaaaggg tgcgaatacg ggcggcagtc ctcgagact //