LOCUS WWFV01000183 1632 bp DNA linear BCT 13-JAN-2020 DEFINITION Streptomyces sp. SID89 SID89.c201, whole genome shotgun sequence. ACCESSION WWFV01000183 WWFV01000000 VERSION WWFV01000183.1 DBLINK BioProject: PRJNA596543 BioSample: SAMN13630933 KEYWORDS WGS. SOURCE Streptomyces sp. SID89 ORGANISM Streptomyces sp. SID89 Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces. REFERENCE 1 (bases 1 to 1632) AUTHORS Chevrette,M.G., Carlson,C.M., Ortega,H.E., Thomas,C., Ananiev,G.E., Barns,K.J., Book,A.J., Cagnazzo,J., Carlos,C., Flanigan,W., Grubbs,K.J., Horn,H.A., Hoffmann,F.M., Klassen,J.L., Knack,J.J., Lewin,G.R., McDonald,B.R., Muller,L., Melo,W.G.P., Pinto-Tomas,A.A., Schmitz,A., Wendt-Pienkowski,E., Wildman,S., Zhao,M., Zhang,F., Bugni,T.S., Andes,D.R., Pupo,M.T. and Currie,C.R. TITLE The antimicrobial potential of Streptomyces from insect microbiomes JOURNAL Nat Commun 10 (1), 516 (2019) PUBMED 30705269 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1632) AUTHORS Chevrette,M.G. and Currie,C.R. TITLE Direct Submission JOURNAL Submitted (30-DEC-2019) Bacteriology, University of Wisconsin-Madison, 1550 Linden St, Madison, WI 53706, USA COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.11.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 52x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 01/08/2020 20:59:45 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.10 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 8,441 CDSs (total) :: 8,361 Genes (coding) :: 8,098 CDSs (with protein) :: 8,098 Genes (RNA) :: 80 rRNAs :: 3, 2, 2 (5S, 16S, 23S) complete rRNAs :: 3, 1 (5S, 23S) partial rRNAs :: 2, 1 (16S, 23S) tRNAs :: 70 ncRNAs :: 3 Pseudo Genes (total) :: 263 CDSs (without protein) :: 263 Pseudo Genes (ambiguous residues) :: 0 of 263 Pseudo Genes (frameshifted) :: 49 of 263 Pseudo Genes (incomplete) :: 225 of 263 Pseudo Genes (internal stop) :: 9 of 263 Pseudo Genes (multiple problems) :: 19 of 263 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1632 /organism="Streptomyces sp. SID89" /mol_type="genomic DNA" /submitter_seqid="SID89.c201" /strain="SID89" /host="Portulaca grandiflora" /db_xref="taxon:2690366" /geo_loc_name="USA" /collection_date="Jan-2015" gene complement(<1..1632) /locus_tag="GTW59_02325" CDS complement(<1..1632) /locus_tag="GTW59_02325" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019983619.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="GAF domain-containing protein" /protein_id="MYX39942.1" /translation="MAAQVFLLQVIVVLVLVAAAAGALVLQGRYDGEDTARVRSLATA EAFAHAPGTLRALQSPDPTAMLQPATVQAQAGSGVDFISVLDKAGIRVSDTEPRLIGT YAQGVERAAAGETFTERFHGEPSDAVRAVVPVLDGSRRVVGMVSAGIQVENLGHLLDQ QVPMVLGSAALALVLATAGTALVTRRLRRQTHGLGPAEMTRMYEHHDAVLHAVREGVL ILDGDGRLLLANDEARRLLNLPEDADQRHVTELGLGPELTGLLASGEAVSDAVYPVGD RLLAVNSRRTAPYGGAPGLVASFRDTTELRALTGRAEVARGRLTLLYEAGVRIGTTLD VRRTAQELAEVAVPGLADVVTVELLEAVLHGEEPTGALNRMRRTALRGTGAGQPLQPV GDLIQFVVADTPMVAALSQGKAVLVPDLHAAQDWRAQDPEGARQVLDSGVHSLITVPL RARGVVLGMVNFWRGAGSPRFEDEDVSVAEELGARAAVAIDNARRYTREHAMAVTLQR SLLPRDLPEQDALEVAWRYLPAQSGVGGDWFDVIPL" BASE COUNT 205 a 670 c 566 g 191 t ORIGIN 1 cagcgggatc acgtcgaacc agtcgccgcc cacccccgac tgcgccggca gatagcgcca 61 cgccacctcc agcgcgtcct gctccggcag gtcccggggc agcagactgc gctgcagggt 121 cacggccatc gcgtgctcgc gcgtgtaccg gcgcgcgttg tcgatcgcca cggccgcccg 181 cgcccccagc tcctcggcga ccgacacgtc ctcgtcctcg aaccggggcg agccggcccc 241 gcgccagaag ttgaccatcc ccagcaccac gccgcgcgcc cgcagcggca cggtgatcag 301 cgagtggacg cccgagtcca gcacctgccg ggcgccctcg gggtcctgcg cccgccagtc 361 ctgggccgcg tgcaggtccg gcaccagcac cgccttgccc tggctgagcg ccgccaccat 421 gggcgtgtcg gcgacgacga actggatcag atcgcccacc ggctgcaacg gctgcccggc 481 ccccgtgccg cgcagcgcgg tgcgccgcat ccggttcagg gcgcccgtcg gctcctcccc 541 gtgcagcacc gcctccagca gctccaccgt caccacgtcc gcgagtcccg ggaccgccac 601 ctcggccagc tcctgcgcgg tgcgccgtac gtcgagcgtg gtgccgatcc gcacgcccgc 661 ctcgtacagc agcgtcagcc ggccccgggc cacctcggcc cggccggtca gcgcgcgcag 721 ctccgtggtg tcgcggaagc tggccaccag gcccggcgcg ccgccgtagg gcgcggtgcg 781 ccgggagttg accgcgagca gccggtcccc gaccgggtac accgcgtcgg agacggcctc 841 gcccgaggcc agcagcccgg tcagctccgg acccagcccc agctccgtga cgtgccgctg 901 gtcggcgtcc tccgggaggt tcagcagccg gcgcgcctcg tcgttggcga gcaggagccg 961 cccgtcgccg tcgaggatca gcacgccctc gcgcacggcg tgcagcaccg cgtcgtggtg 1021 ttcgtacatc cgggtcatct cggccgggcc gaggccgtgg gtctggcggc gcagccgccg 1081 ggtgaccagg gcggtgcccg ccgtcgccag caccagcgcc agcgcggccg agccgagcac 1141 catgggcacc tgctggtcca gcagatgccc caggttctcc acctggattc cggcgctgac 1201 catgccgacc acgcgccggc tgccgtccag caccggcacc accgcgcgca cggcgtccga 1261 cggctcgccg tggaaccgct cggtgaaggt ctcgccggcg gcggcccgct ccacgccctg 1321 cgcgtacgtg ccgatcagcc gcggctcggt gtcgctgacc cggatgcccg ccttgtccag 1381 caccgagatg aagtccaccc ccgagcccgc ctgcgcctgc acggtcgcgg gctggagcat 1441 ggccgtcggg tcgggcgact ggagcgcgcg cagcgtgccg ggcgcgtggg cgaacgcctc 1501 cgccgtcgcc agcgagcgca cccgggcggt gtcctcgccg tcgtagcggc cctggagcac 1561 cagggcgccg gccgccgcgg cgaccagcac caggacgacg atcacctgga gcaggaagac 1621 ctgtgcggcc ac //