LOCUS VZUJ01091383 8991 bp DNA linear VRT 10-JUL-2020 DEFINITION Atlantisia rogersi isolate OUT-0055 NODE_28043_length_8991_cov_12.7963_ID_56085, whole genome shotgun sequence. ACCESSION VZUJ01091383 VZUJ01000000 VERSION VZUJ01091383.1 DBLINK BioProject: PRJNA545868 BioSample: SAMN12254006 KEYWORDS WGS. SOURCE Atlantisia rogersi (Inaccessible Island rail) ORGANISM Atlantisia rogersi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Gruiformes; Rallidae; Atlantisia. REFERENCE 1 (bases 1 to 8991) AUTHORS Zhang,G. TITLE Bird 10,000 Genomes (B10K) Project - Family phase JOURNAL Unpublished REFERENCE 2 (bases 1 to 8991) AUTHORS Zhang,G. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) B10K Consortium, Jinsha Road, Dapeng New District, Shenzhen 518000, China COMMENT ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.5.0 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 41x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..8991 /organism="Atlantisia rogersi" /mol_type="genomic DNA" /submitter_seqid="NODE_28043_length_8991_cov_12.7963_ID_56 085" /isolate="OUT-0055" /db_xref="taxon:2478892" /sex="male" /tissue_type="blood" /geo_loc_name="United Kingdom" /lat_lon="37.29 S 12.69 W" /collection_date="23-Sep-2011" gene <1216..>8721 /gene="Cep85" /locus_tag="ATLROG_R07720" mRNA join(<1216..1270,1839..1991,4048..4772,5409..5542, 6339..6456,7632..7817,8170..8322,8569..>8721) /gene="Cep85" /locus_tag="ATLROG_R07720" /product="CEP85 protein" CDS join(<1216..1270,1839..1991,4048..4772,5409..5542, 6339..6456,7632..7817,8170..8322,8569..>8721) /gene="Cep85" /locus_tag="ATLROG_R07720" /codon_start=1 /product="CEP85 protein" /protein_id="NXV79026.1" /translation="MAALEKHPDLRLQQSNPSDPSTSQNSHFSETDWKTPMLSVKFQS RVSRCSSVADSGDGGIGTSCSDSTEDFCNSSNGSSFQPIKTQVTIPTAHVMPSTLGAS PSKLCSAGDQGCSQSTSKTAMPGAASDHAGLLRNGDFNAGKSSQVPPRDLSHLCRTSG ENGFEQSWHPVSDHMRTEDTWKFDTPAIERTLNQSLFLDSLCADPLHRFQKFNPNSGA AEAGKDRYKVLPESKQTAGSNGACEPQDGPWPSGSRLMPTGLQADSLFSKPVTPSSRV WLREACSLHPHERVCELSAWKEQLDKVRLQIEQMQLQNGGACHHPSMYSPSLPVPDPA QWINILNSNENLLKEKELLIDRQRQHISQLEQKVRESELQVHSALLGCPASYGDVYML RMQDLQRENSFLRAQFTEKTESLSKEKIELERKLAAAEVDAKLIRESLKETMQKHAEE LKKQEERVKGRDKHINNLKKKCQKESEQNRERQQRIETLERYLADLPTLEDHQKQSQK LRESELKSTAMQETVLALETELGDVRAAFREQEVQLETQKHKELELLSTVR" BASE COUNT 2335 a 1792 c 2333 g 2531 t ORIGIN 1 ggcctccccc cccccccccc ttattcaccc cctgtcaccc cccctcccgc tccctttcct 61 ctttcttctt cgttttcgct tattttgctc atatctcttc ccaccgcgtc tgtggaaggg 121 ggaggggggg tctgtagggt actgtgggct ctctggttgg ggggggaggg aggtgtgttt 181 gtcagagggt catgctgagc tgggtgtgct ttggttagtt tgttgtgctt caagagcaca 241 ggcttgaatt tccctgttat aaccagactg tagcactgga gactgagatt taaactctag 301 atgttctgaa acacgcctaa attaaacaca gtcagcactg tgtgaagtgg gagcgttctg 361 tttgctgtct gaggaaaatg cttttgattc attatcaaca ctcgtgtatt cccagtgtct 421 atcctatgtt gtaaaaactc tgtgtgtgtg tatatatata tgttttctaa ggattacagg 481 cttccatgag ctctgaatca tttaatcaag aatctataag agctggtagt caaggattta 541 gcagctgact ggtggagagg agagcagtct tgaatttcca cggtgaagcc gtagagctgt 601 gaattacact tgcctcatca gaggcaggaa actcactgcc tgaagtgctc agataaggag 661 ataaattaaa ccaaagctct gggtggataa tgattgtcgt ttgtggaaca acaacggcta 721 agttttgaat gactgcattt ctgtgtgtag ttgctcggtg acctccacag agggcagaaa 781 tgaactgatt cagactccag actttttaaa gggaaattct tagtctctgt agatgtaaaa 841 ccagtgtgtg ggtaccatgg tgactgaggc tctataaata actacgatgg ggatagcaca 901 tgccccagtt gaaaggcgct gctgagctgc tgcatacctg gagagtgttg caaacaggaa 961 ctctcctcat ttctcaggca tgaaggaaac ctccagtaac tgcaagggtt tctttaagtt 1021 attttctctg cctgctgcag gaaccaaaca ggtattttgg gaggagacac taattaaata 1081 taaaatactg tgctactctg aagaaaaggt agctgatgtg tgtgtaccct tcacttggtt 1141 agcaggaaca ctggttgatg ctgatttaaa ataagattgt gaattattgt cttgtagtta 1201 actggataga taaagatggc tgctcttgag aaacatccag acctgaggct ccagcagagc 1261 aatccatcag gtaagagcag tcctttcttt taaagccctg ctgctgttgg atcctgtttc 1321 agtttctctg aggagacaag tggccctgag aaagagttct ttaccaaaag cttcttctta 1381 aaaaagcagt gtcttattcc tgcaaaataa gacaattgca tggatatgca aacctctctc 1441 ttgagctgta acagataaat agggaagagt tcttaccagt tagtgcaaaa atatatcttt 1501 accagtactg ccatgtgcta acagggctgt tctttttagt ttgagatcat caggtaggtg 1561 taatatgccc gttgataagc ctggtgatat aatttactgc ttttgcattc tgacttccat 1621 accaagatgg attttcagac ttcttttgaa actatttgac ctccttgtgt ttgctgccat 1681 ttccttttgc aaatgagatt tctttagcaa caatgtgggg agccaggcaa ggattggttt 1741 gggttttggt agcatgagaa atcagatgaa ttaattagtt gtattaaaag gcttttgaat 1801 tggctaaaac ataaataccc ttggctttgt ctctccagat cccagcacca gtcagaacag 1861 tcatttctca gagactgact ggaagacacc gatgttgtct gtgaagttcc agagccgtgt 1921 cagtcgctgt tcaagcgtgg ctgacagtgg ggatggaggc attggcacct cctgctcaga 1981 cagcacagaa ggtgatggtc agcagtaata cttaaagatg tttaagtttg cttacaagac 2041 tgacaaacat taaatagctg gatgttactg caccctggga tgtgaaattt ggggagagta 2101 gaatctgtaa tgatgtttgg agtctgtttc aaaccagtac ctcagcactc agccctgctg 2161 ccaaaaagat aacagctgat taggggactt gcagtctctc agagctagtt atcttgtaac 2221 tgtaacatgc atttttaaag agctaaaaga gccattttgg tgattttctg gttcatagtg 2281 acttacaggt gatttatcag caaatctgtt gctttttttt gtctttaaga aataatttat 2341 aggcatttct agacacttca ggtctgtgta ttttcatctt catgcatgaa agtgacttaa 2401 accaggattg attcttcttt cagtggtgag aatatttgtg ttctttaaag caatgcactc 2461 cacacattga tgtgttctgt aagctgccct gagcctttgg gctgagctat agatctcagt 2521 aatgtgagag ctgaaatgaa ggctttttta aaagtctggc ttgtagaaat actgctagat 2581 acattactgg agtgcttgtt taggtggccc atctagcctc ttccagcata ataaagcatc 2641 cagttggcca ctgagggcag gggaagtaac actgaccctt tcagaaactg cccttctgaa 2701 cgtttgtaac atctagcctt gtttgtgtga gctgagggtg aaatgcagca ctgacagctg 2761 gctcaagcac gctgacttcc aggtctgtac attagtcaga agtgttgtga gcacccttag 2821 cacgctcaag gaactgattg cagcatccac acgtggtgtg tgctggtctg gggccttgaa 2881 ttcctggtag tgatactggg gtataaattt aggggctgta aagggaaata gtacagtctt 2941 atgtgcttgc caaggtgaat gtgcttgtga ctagttggta acatggtgtt cttgggacaa 3001 gtaatgtgta agagattttc tccccctcag tgactcaaag tcttgtgcct tttattgtga 3061 tcattttcct tcagtttaat gatcttccca gaatctagtt tccatcctgt tcaaactgta 3121 accttttatt ccttcttgta acaacacttt gaggttacaa agaggtggag gggtgacctt 3181 gatgtcctgg attaaagaaa catcctacag ggatgggcct ctagccaaaa cctgtgagga 3241 aaacaagttt gcctatctgg gagaaacctg gaatcacaca tacacaatgt attatggcaa 3301 ggcatgggaa caggcgcttc gctgtttgtc tttcccagct cttgctgttg ctgtattgaa 3361 acctgagagt tgctaagaat aaccctgtat tcccacgtag ccaggtttgg tgcccatctg 3421 acaggatggg ctcacgttgg ggtccgtgtg ccgaactcga tctcgtttcc tgtggcaata 3481 aggcaagagc tgttacgcta gcctctagaa aaagctcttt tgctgcagtg tcctggagga 3541 gttcgaaggt cagctgtttg gagatcctag tgttcagctg tgtttgaagc tcatcatggg 3601 cttagcaaag gctccagtta gttttggtta cggttcagag ccgctgagct gtgggacggg 3661 cagaacagaa tcaaggtctc agtgttcagc tgagtaagtt tcagcctttt tattccattt 3721 aaaggacttg atttctacat ctatagaaag ataaccttgt tgatttaaga ttatactaga 3781 ataacttaag aacaagggat taaaaatgtg tactgaacta aaattggatt caccctgtgg 3841 tttgtggtgg taggaaaata tcagcttgct cctgaaattt gtagtgaggg gaaacatgga 3901 tgtgccttag tcttgctgct gcttaggagg atgtgttcag ggggaataaa actggttttt 3961 aaaattcttt caaatagttg ctcagcagag gagcagctga gtattttcag gattgtaatt 4021 aaagcatcac tcttcttctt tccctagact tttgcaattc cagtaacggt tcctcattcc 4081 agcccatcaa aacccaagtg accatcccaa cagcccatgt tatgccttct acactgggtg 4141 cctcaccctc caaactgtgc tctgcgggag accagggctg ttcacagagt acttcaaaga 4201 ctgctatgcc aggagctgct tctgaccatg caggtctctt gagaaacgga gacttcaacg 4261 ctgggaagtc ttctcaggtg ccacccaggg atctctctca tctctgtagg acttcagggg 4321 aaaatggttt tgagcaatcc tggcatcctg tttctgatca catgagaaca gaagatactt 4381 ggaagtttga cacccctgcc attgagcgca cccttaacca gtctctcttt ctggatagtt 4441 tgtgtgctga ccctctccac aggttccaga agttcaatcc aaactctggg gcagctgaag 4501 caggaaagga tcgttataag gtgctaccag agagtaagca aacagctggg tctaacggag 4561 cctgcgagcc ccaggatgga ccgtggccga gcgggagcag actgatgcca acgggactcc 4621 aggctgacag tttattttca aagcctgtaa ctccttcatc tcgagtgtgg ctgcgagaag 4681 cctgctcact ccacccccat gagagggtct gtgagctcag tgcttggaag gagcagctgg 4741 acaaagtccg actgcagata gagcaaatgc aggtagggag ctgcttgtgt gaatgtgaga 4801 gtttgaaacc ctcccagtct cattagtcat gaatcgtttt cctgggctta agaagcaagg 4861 gggaaaatat cttgtgcttc tctctctccc actgaaagtc tcttaatgat caggttttat 4921 gacatgtagt gtcacgagta tcatctgaca tgctgcttat gtagagtggc cctgtattat 4981 gttacagcac tgcaccctgg gtcagatcaa ggggtgaaat atcctgtctg gtagagactg 5041 caaagaaaaa gcatgctgag ttgttcctaa cagtttctag aataaatgtg tctagaggta 5101 ggactttctc ttgaaaagat gcacagaact agctgcagtt tgctaggtgg aattggatta 5161 tcacttccca ccagctgtac cagtttggag acaaactttc cagccagcta gtgcagtgat 5221 ctaaaattat ttgttaatct ccagttgtgc ttgggcaaag ttacttgttc ttggacatca 5281 acagagactg aaatagctgt gtcctggcat gcagatgagc acacagtgtg caaaatagct 5341 ctagtcaatg ttgcaattac ctctgtggag cccaaactgc cccctcctca ctttgtctcc 5401 tcttccagtt acaaaacgga ggtgcctgcc accatccctc catgtattct ccttctctgc 5461 ctgtacccga tccagcccag tggatcaata tcctgaactc caatgaaaat ctcctcaagg 5521 agaaagaact tctcattgac aggtgagagt ttgacactga tgtgtggttt agagactcca 5581 gtgtgtttcc ttttggaaag ggaagggttt ggaggtacca agggaaagcc ttcccttcta 5641 cctgactgag ctttttatgt tgcaaagaat ggaatgacct ttgagaacag ttctcctctt 5701 cagagtagga tggtgatcat gaagggttta aggcaatttt ggttatggtt ttcagggttt 5761 tataacaggt aaagatttgt gtttacatga tggttgtctg gaatgacaaa attactgtgc 5821 ttttgcttgg gggctttctg ggagctcttt gagatcctta ttttaaatat gttctttgag 5881 ctggcaaacc acttctcttc cctaatgcta gtggtccata agcttattga aaacctgagt 5941 cacccaaaac caccttctgc tttttgactg taaatactta tcctctttgg ccattttgag 6001 tcttctgatg tctctttatt tgactcataa gctctgcagc caagctagat cctccaaagc 6061 tggtaggtct tgtgtgttat gtgtgtaatc tctgcaggag gggggaggct ttgaaggggg 6121 gaaaaattaa tatcaattct agcaaaaaaa aattgaagag gtatcttgga tgatttctct 6181 gcaggtcagc tctgagttgc agagttgttg ttcccttctt gtcactgtct ggagcattgg 6241 agtgtggtgg cactgtttat gttgtattgc tctctgctac ctttgcagca agatgtatgc 6301 ttgaggactg tgtggtttgt ggtgtttgtg tttttaagac aaagacaaca catctcccag 6361 ttggagcaga aggttcggga aagcgagctg caggttcaca gtgccctgct tggctgtcca 6421 gcatcctatg gagatgtcta catgttgaga atgcaggtaa ttgggtgtaa gagggtgcaa 6481 cagggtgcta gtaagaagta tgcaatgaat ctgatggaca tactgcgtct cattgggcat 6541 ttcctgagta ggagggctat gcagggtgaa gttctgcttt gtaacggggt cctgatgact 6601 tgtcttctct gagatcttcc atgactctgg agatttcaag ccctgaagta ctatggtttt 6661 agaagccatg ctagcaatgc agatacttga cagcactggc aaatgtcgat ctgcctgtgg 6721 gtagggaggc tcttcagaga gatctggaca ggctggatcc atgggctgag atccatgagg 6781 ttcaacaagg ccaagtgcag agtcctgtgc ttgggacaga acaaccccca gcattgctac 6841 gtgctggggc agagcagctg gagagctgct gatggaaaag gacctggggg tgttgggtga 6901 ctgcagactg gacatgagcc agcagtgtgc ctgggtggcc aagaaggcca acggcatctt 6961 ggcttgtcag acccagtgtg gccacagggc cagggcaggg actgtgccct gtgctcagca 7021 ttggtgaggc tgcacctcga gtgctgggtt caggtttgca cccctcacta caagaaaaac 7081 atcgaggtcc tggagtgtgt ctggagaagg gaacaggctg gggaaggggc tggagggcag 7141 cagacctttt gaggagcagc tgagggagct gggggtattc agcctggaga agaggaggct 7201 gaggggagac cttatcacca cctacagtta cctgacagga gggtgtagag aggtgggggt 7261 tggtcttgac tggtgatagg atgaggggaa tggcctggag ctgcaccagg gcagggtcag 7321 atcagacatg aggaaaaagc tcttcccaaa agggttctgg ggcactggaa ctggctgccc 7381 agggaggggg ttggatcacc gaccctggat gtattttaaa gatgggtaga tgaggtgctc 7441 agggatatgg tttggtagag gacaggtatg gttggactga atgatctcaa aggtcttttc 7501 caaccttcag gtactgcagt acataagctg ggctgaattt gggaattagg agagctcaga 7561 acacagctct gagtgcagct gcttggagcc agtttgtgac taagcaaatt cataggcagc 7621 tctgttcgca ggacctgcag cgggagaact cgtttcttcg agcacagttc acagagaaga 7681 ctgaatccct cagtaaggaa aagattgaat tggagaggaa actggctgct gcagaggtgg 7741 atgcaaagct gatccgggag tcgctgaagg aaacgatgca gaaacatgcg gaagagttaa 7801 agaaacagga agaaagggta tgatcctatt gctgtagaga tggaaaagtg ttttttttct 7861 tggagaagat aagtcattgc agtgcctaga tgcaagtgtt gtgtgacagg gtgttattgc 7921 aggtattttc taatctccct gtagattact ttggtttgta agcagaagct tcctgcagtc 7981 agaagtattt cattacctcc tcttttaact agcaaagaga cctagcttta gctaaggagc 8041 agaaatgttc ctgaggtaag gggatcttgt attttggtgt caagtaaggt aaatgagtgg 8101 gcttacagag gactgaaaaa tggacaagga agtatataaa ctgaattttt tttataactg 8161 tccctgcagg taaagggcag agacaaacac atcaataacc ttaaaaagaa atgccagaag 8221 gaatctgaac aaaacagaga aagacaacag agaattgaga ccctggaacg atacctggct 8281 gacttaccaa cccttgaaga tcaccagaaa caaagccaga aggtaaaact tcctgagttg 8341 taaagagcta cagtcatata tttacttggg tggctcctct gcagctgcag ataatcccct 8401 gggcagctgc ccagtctggg ctttttggag aaggaatttt ctgagctgca gctgagaatt 8461 gccacatagg taggaaaaac ttgccttgca aatgtagttg aaacgtagtg tgagtggtga 8521 aacccctgga agatctctag agtcttgtga tggttttttt tttggcagct gagggaatct 8581 gaactgaaga gtacagctat gcaggaaacg gtgctggcac tggaaacaga gcttggggat 8641 gtccgggctg ctttcaggga gcaagaggtg cagctagaaa cccaaaaaca caaggagctg 8701 gagcttctgt ccactgtgcg caggtaaaca tctgtcagac tggaataagc ttcatctcat 8761 agatgatgaa gggcctggaa catctatcta aggctgagag agctggggct gttcagcctg 8821 gagaaaagaa gactgagggg ggacctaatc aatggttatc aatatcttaa gtatggggtg 8881 cagagggaat tgtccagccc cttttctttg gtcagtgggg acaggacaag gggcaatggc 8941 tgcaaattgg agcacaggaa gttccacacc aacatgggag gaacttttcc c //