LOCUS VYCM01000115 6937 bp DNA linear ENV 09-JAN-2020 DEFINITION Acidimicrobiaceae bacterium isolate SB0675_bin_16 NODE_4207_length_6937_cov_42.498838, whole genome shotgun sequence. ACCESSION VYCM01000115 VYCM01000000 VERSION VYCM01000115.1 DBLINK BioProject: PRJNA555144 BioSample: SAMN12598631 KEYWORDS WGS. SOURCE Acidimicrobiaceae bacterium (sponge metagenome) ORGANISM Acidimicrobiaceae bacterium Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae. REFERENCE 1 (bases 1 to 6937) AUTHORS Engelberts,J.P., Robbins,S.J., De Goeij,J.M., Aranda,M., Bell,S.C. and Webster,N.S. TITLE Characterisation of the sponge microbiome using genome-centric metagenomics JOURNAL Unpublished REFERENCE 2 (bases 1 to 6937) AUTHORS Robbins,S.J., Engelberts,J.P. and Webster,N.S. TITLE Direct Submission JOURNAL Submitted (12-SEP-2019) Australian Centre for Ecogenomics, University of Queensland, Coopers Camp Road, Brisbane 4065, Australia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: metaSPades v. v3.9.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 22.07745x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/21/2019 02:49:48 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,067 CDSs (total) :: 3,029 Genes (coding) :: 2,992 CDSs (with protein) :: 2,992 Genes (RNA) :: 38 rRNAs :: 1, 1, 1 (5S, 16S, 23S) partial rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 33 ncRNAs :: 2 Pseudo Genes (total) :: 37 CDSs (without protein) :: 37 Pseudo Genes (ambiguous residues) :: 4 of 37 Pseudo Genes (frameshifted) :: 8 of 37 Pseudo Genes (incomplete) :: 24 of 37 Pseudo Genes (internal stop) :: 4 of 37 Pseudo Genes (multiple problems) :: 3 of 37 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6937 /organism="Acidimicrobiaceae bacterium" /mol_type="genomic DNA" /submitter_seqid="NODE_4207_length_6937_cov_42.498838" /isolate="SB0675_bin_16" /host="Ircinia ramosa" /db_xref="taxon:2024894" /environmental_sample /geo_loc_name="Australia: Great Barrier Reef" /lat_lon="18.49 S 147.38 E" /collection_date="Oct-2016" /metagenome_source="sponge metagenome" /note="metagenomic" gene <1..446 /locus_tag="F4134_10670" CDS <1..446 /locus_tag="F4134_10670" /inference="COORDINATES: protein motif:HMM:PF14333.4" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=3 /transl_table=11 /product="DUF4389 domain-containing protein" /protein_id="MYH78171.1" /translation="ISWIVILFTGKLPAGLAGFQAMYLRYSTVVWAYAYFLIDQYPPF DFDTSPADAGRSQTSVSFSPALEGRNRLTVLLRPITVIPAYIFNLIIVVIATVCIILG FFAVLFTGRWPDGLRRFVVGSHLVSLRYFTYGLLLTDEYPPFSMD" gene 466..1764 /locus_tag="F4134_10675" CDS 466..1764 /locus_tag="F4134_10675" /inference="COORDINATES: protein motif:HMM:PF01593.22" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="FAD-dependent oxidoreductase" /protein_id="MYH78172.1" /translation="MHDVVVVGGGIAGLTAARDLAQSGHSVLVLEARDRLGGRTWYKQ FGDTGRRTEMGGTWFDEPTQLNIAREIQRYSLPTVLSPAGQEFRVSLCGRSLPRPDQP VPREFRPDLDKALDHIIEQSRRVTFGADLDNPDLHDLDISFAEFIGPYTDQPFVAEYL TMWSAFAFGCHPSENSALQVLIWVAGYDNAVWTLDDAPATKFAKGTASLVDALADDSG ADIELSAPVASITDAGNHIEVSTVGGDTHTARFAVLAAPVNTWQDIDLPIGADSLKAQ FAREGLAGHALKLHALVDNVPEFLMASGWGGPLCWTSEQANFDGGRLLVGIGEDDSAI DATDPAQVQQALRQFAPEATVRICHGHNWSADPYAKGTWTTYRPGQLSRYYSDFAVPH GRLYFAGSDLARGWAGFMDGAIESGTDTAAALGQRLRDDA" gene 1815..3464 /locus_tag="F4134_10680" CDS 1815..3464 /locus_tag="F4134_10680" /inference="COORDINATES: protein motif:HMM:PF07969.9" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="amidohydrolase family protein" /protein_id="MYH78173.1" /translation="MADMTVFVARTVRTMEPSLPVAEAVAVRDGRIVEVGTLDTMRPW LESHSHEIDDTFKDHCIMPGFIDPHLHPSMAAILLPMHFTTAVGWDLPWEDIGPVRDS EQFHARMESLDAALAPGDPLFTFGHHPIWHGPIDRSALNQISTTRPIVAWHRGYHSIT VNDACLRWMDLDTAAAGRHPQVDLDAGKFFETGLSVALRHLRGYLLETERFRAGLDRM RQVIHHGGHTTIGDAALGFYGFEQEWDHLQAVMEQPDTPFRIQLMPFAMGPEGDERTD DEFVERVLSYPSRNTHRLRFSDHAKMFADGGFFAELLMLKPPGHLDGRHGEWMTPPER FEAVARALWNAGLRIHVHTSGDLGVELALSTLEKLQWEHPRFDHRFTFEHFGISSAQQ VDRMAAVGAVASVNAYYVYELAEAFAARAVGYERASQISRLGSLERAGVRFAVHSDFP MAPAKPLNNAWVAANRLTESGAVMGATERASLEAAIKAITTNAAYVLGLEEEIGSLRW GKRADFTVLEADPYEVGAEALRDIAIWGTVFEGHKFPIRDG" gene 3416..4411 /locus_tag="F4134_10685" CDS 3416..4411 /locus_tag="F4134_10685" /inference="COORDINATES: protein motif:HMM:PF02492.17" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="GTP-binding protein" /protein_id="MYH78174.1" /translation="MGNRLRRPQVPDPRRLTMGAHASKGLVPVTVIAGYLGAGKTTLI NELLAHDHGRRLAVLVNDFGAVNIDAVLIADHDGQTISLKNGCVCCSIADELGDALDR VLALEPAPDQIVIEASGVADPANVAAYGQGWPGCRLDAVVVLADAETVQAKSRDQFVG ELVVRQLRRADIVMATKCDLVTEAEREAALAWLAETAAGAPILTRRAGQLEPELLLET AQPIERPSPQQPHPGNGPAEPAFDSAVVEVNGTLDRDRVEAALRDWPDSVLRVKGTLR FNGAVGGLHIVQRVGRRWSIEPAPDGFNSSHTGKLVVIGLPGTLHRRYLASSLLN" gene 4534..5232 /locus_tag="F4134_10690" CDS 4534..5232 /locus_tag="F4134_10690" /inference="COORDINATES: protein motif:HMM:PF00440.21" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="TetR/AcrR family transcriptional regulator" /protein_id="MYH78175.1" /translation="MAERTSVDTREQILRVSSRLFTERGYRATSTRDIADGVGIRQPS LFHHFSSKAEIMADLQRVEFEPAVRILDAARSLPGSASARLFCALFLDFRRLLLLPYD LGATTTAEVLNEPALADQRLVWDRLLAAQGTLITDGIADGELLDLDADFANRAVAWLI EGAYIDASRREDIDPTEFADQVASFSLRALLVDDARCDRVRTEALGLVEELEAAAHLS SEMCPSPPRADNQR" gene 5248..6291 /locus_tag="F4134_10695" CDS 5248..6291 /locus_tag="F4134_10695" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_019927534.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="MYH78176.1" /translation="MGTDLTGGLSEELDYVFATRPDEPEMRESVNVWLWDKGDRIGIP RIGIEAVAERWHAHDVQVNIASGDGRVFNRYGTGDAHDPLNAQGRPATLGAGPLSFEC VEPFRHWRMRFYGRVHEWTCDEQIAGGQPPSEPSVRVQIDVDLHSAVPPWVNGGLLPE VKRVLEEQDEGALIGGPRFEQLARARGTVVIGDVEHRIDGGALRIRRRGVRRLGTFRG HAWQSALFGSGRAFGYLVFPPRDDGLPTYNEGFIFTGDGELIPAWVVDAPWLKHLQHH GDDATVVIESEQGTTTIEAETVMSTFMVMGGVGPGTEGYPVLQQAVTRFRWDGEEANG MMERSVPGNLIEP" gene 6288..>6937 /locus_tag="F4134_10700" CDS 6288..>6937 /locus_tag="F4134_10700" /inference="COORDINATES: protein motif:HMM:PF13469.4" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="sulfotransferase" /protein_id="MYH78177.1" /translation="MSRTGAAPPTVASRIDDLIGEARAQTGLDNFGGDTWREGLEVLI RSATTEATLSDMGEHGFNRAVLRALTNRLKVEDWYRRHPEIDEQTVEIEFVGVGLPRT GSTALSHLLGEDPAFRNLRTWEEGDPCPPPGVDAAADQARIDATQMVLEMAHGHMAAR LRSMLPQSATGPMEDHNLMAMEFKAQFFLVMGHMPTYGHWFAHCDMEPTYRYAERVL" BASE COUNT 1108 a 2554 c 2246 g 1029 t ORIGIN 1 tcatctcgtg gatcgtgatc ctgttcaccg gcaagctgcc cgccggcctc gccggctttc 61 aagccatgta tctgcgctac agcaccgtcg tctgggccta cgcctacttc cttatcgacc 121 agtacccgcc cttcgacttc gacacctcgc cggccgacgc cggacgctcg cagacgtcgg 181 tgagcttctc gcccgcgctc gagggccgca accggctcac ggtgctgcta cggcccatca 241 ccgtcatccc cgcctacatc ttcaacctga tcatcgtcgt catcgccacg gtctgcatca 301 tcctcggctt cttcgcggtg ctgttcaccg gccgctggcc cgacggcctg cgccggttcg 361 tggtcggctc gcatctcgtc agcctccgct acttcaccta cgggctgctg ctcaccgacg 421 agtacccgcc gttctcgatg gactgacccg gcgggggcgg gatccatgca tgacgttgtc 481 gtcgttggcg gtgggatcgc cgggctgacc gctgcccgcg acctggccca gagcggccac 541 tcggtgctgg tgctggaggc cagggaccgg ctcggcgggc gcacctggta caagcagttc 601 ggcgacaccg gccgccgcac cgagatgggc ggcacgtggt tcgatgaacc cacccagctc 661 aacatcgccc gcgagatcca gcgctactcc ctgcccaccg tcctcagccc cgccggccag 721 gagttccggg tgtcgctctg cggccgcagc ctcccccgcc ccgaccagcc cgtgccccgt 781 gagttccgtc ccgacctcga caaggccctc gaccacatca tcgagcagtc ccgccgggtc 841 acgttcggcg ccgacctcga caacccggat ctgcacgacc tcgatatctc cttcgcggag 901 ttcatcgggc cgtacacgga ccagccgttc gtcgccgagt acctcacgat gtggtcggcc 961 ttcgcgttcg gctgccaccc ctcggagaac tcggcgctgc aggtcctgat ctgggtggcg 1021 ggctacgaca acgccgtctg gacgctcgac gacgcccccg ccaccaagtt cgccaaggga 1081 acggccagcc tcgtcgatgc cctagccgac gacagtggcg ccgacatcga actctccgcg 1141 ccggtcgcct cgatcaccga cgccggcaac cacatcgagg tctcaaccgt cggcggcgat 1201 acccacaccg cccgcttcgc ggtgctggcc gcccccgtca acacctggca ggacatcgat 1261 ctgcccatcg gggccgactc gctcaaggcg cagttcgccc gcgaggggct ggccggccac 1321 gccctcaagc tccacgccct ggtcgacaac gtccccgaat tcctgatggc ctcaggctgg 1381 ggcggaccgc tgtgctggac ctccgagcaa gccaacttcg acggaggaag gctgctggtg 1441 ggcatcggcg aggacgactc ggccatcgac gcaaccgacc ccgcccaagt gcagcaggcc 1501 ctccgccagt tcgcccccga ggccaccgtg aggatctgcc acggccacaa ctggtccgcc 1561 gacccgtacg ccaagggaac ctggacgacc taccgcccgg ggcagctgtc gcgctactac 1621 tccgacttcg cggtccccca cggccggctc tacttcgccg gctcggacct agcccggggc 1681 tgggccgggt tcatggacgg cgccatcgag agcggcaccg acaccgcggc cgcgctcggc 1741 cagcgcctcc gcgacgacgc ctagaggccc acccgctcaa accctcgcca cgcaggctcg 1801 atacgggggc tcccatggct gacatgacgg tgttcgtggc ccgcacggtg cgaaccatgg 1861 agccgtcgct gccggtggcg gaggcggtgg ccgtccgcga cggccggatc gtggaggtcg 1921 gcaccctcga cacgatgcgg ccgtggctgg agtcgcacag ccacgagatc gacgacacgt 1981 tcaaggacca ctgcatcatg ccagggttca tcgatcccca tctgcacccc tccatggccg 2041 ccatcctgct gccgatgcac ttcaccaccg ccgtcggatg ggacctcccg tgggaggaca 2101 tcggaccggt gcgagacagc gagcagttcc acgcccgcat ggagagcctc gacgccgccc 2161 tggcgcccgg cgatccgctg ttcaccttcg gccaccaccc catctggcac ggacccatcg 2221 accgcagcgc cctcaaccag atatcgacga cccggccgat cgtggcgtgg caccgcggct 2281 accactcgat cacggtgaac gacgcctgcc tgcggtggat ggacctcgac accgcggccg 2341 ccggccgcca cccccaggtc gacctcgacg cgggcaaatt cttcgagacc ggcctcagcg 2401 tcgcgctgcg ccacctgcgg ggctacctcc tggagaccga gcggttccgg gccgggctcg 2461 accggatgcg ccaggtcatc caccacggcg gccacaccac catcggcgac gccgccctcg 2521 gcttctacgg gttcgagcag gagtgggacc acctgcaggc ggtgatggaa cagcctgaca 2581 cgccgttccg gatccagctc atgcccttcg ccatgggccc ggagggcgac gagcggacgg 2641 acgacgagtt cgtcgagcgg gtcctgtcct acccgtcacg caacacccat cgcctgcggt 2701 tcagcgacca cgccaagatg ttcgccgacg gcgggttctt cgccgagctg ctgatgctta 2761 agccgcccgg ccatctcgac ggccgccacg gcgagtggat gacgcccccg gagaggttcg 2821 aggccgtcgc ccgggcactg tggaacgccg ggctgaggat ccatgtgcac accagcggcg 2881 acctcggtgt cgagctggcc ctgtccaccc tcgagaagct ccaatgggag cacccccgct 2941 tcgaccaccg gttcaccttc gagcacttcg gcatctccag cgctcagcag gtcgaccgca 3001 tggccgcggt gggagcggtg gcctcggtca acgcctacta cgtctatgag ctcgcagagg 3061 cgttcgcggc ccgcgccgtc gggtacgagc gggcgtcgca gatctcgagg ctcgggtcgc 3121 tggagagggc cggagtgcgc ttcgcagtgc attcggactt cccgatggcc ccggccaagc 3181 ccctcaacaa cgcctgggtg gctgccaacc ggctcaccga gtccggcgcg gtgatgggag 3241 ccactgagcg ggcgtcgctg gaggcggcaa tcaaggccat caccaccaac gccgcctacg 3301 tcctcgggct ggaggaggag atcgggtcgc tgcgctgggg caagcgagcc gacttcaccg 3361 tcctcgaagc cgacccctac gaagtcggcg ccgaagcact gcgggacatc gccatatggg 3421 gaaccgtctt cgaaggccac aagttcccga tccgagacgg ctaacgatgg gcgcccacgc 3481 atcgaagggc ctcgtgccgg tgaccgtgat cgccggctac ctcggcgcgg gcaagacgac 3541 gttgatcaac gagttgctgg cccacgacca tggccggcgc ttggctgtgc tggtcaacga 3601 cttcggcgcg gtcaacatcg acgcggtcct catcgccgac cacgacggtc agacgatcag 3661 cctcaagaac ggatgcgtct gctgctcgat cgccgacgag ctcggcgacg ccctcgaccg 3721 ggtgctcgcc ctggagccgg cccccgacca gatcgtgatc gaggccagcg gcgtcgccga 3781 cccggccaac gtggccgcct acggccaggg ctggcccggc tgccgcctcg atgcggtagt 3841 cgtgctggcc gacgccgaga cggtccaggc caagtcgcgc gaccagttcg tgggcgagct 3901 agtagtccgc cagctacgcc gagccgacat agtcatggcc accaagtgcg acctcgtcac 3961 cgaggccgag cgggaagccg cgctggcctg gctcgccgag acggccgccg gcgcaccgat 4021 cctcacccgc cgcgccggtc agctggaacc cgaactgctg ctggagaccg ctcaacccat 4081 cgaaaggccc tcgccgcagc aaccccaccc tggcaacggc ccggccgagc cagccttcga 4141 ctcagccgtc gtcgaggtca acggcaccct cgaccgagac cgggtcgagg ccgcgctgcg 4201 ggactggccc gactccgtcc tgcgggtcaa gggaaccctc cggttcaacg gcgccgtcgg 4261 cgggctccac atcgtccaga gagtcggacg gcgctggagc atcgaaccgg cccccgacgg 4321 cttcaactca agccacaccg gcaaactcgt agtgatcggc ctgcccggca ccctccatcg 4381 ccgctacttg gcctcctcac ttctcaactg acactcacgg ctcttcgatg agccagcatg 4441 cggccgagtc ctcgccgccc cctatggtga cgttcggccg tccccgcccg agcgggaggc 4501 aggcaacaca accgatggaa ggcaggtctc gaggtggctg agcgcaccag cgtcgatacg 4561 cgggagcaga ttctcagggt gtcgtcgcgc ctgttcaccg aacggggata ccgggccacc 4621 tccacccgcg acatcgccga cggcgtcggg atacgtcaac catcgctgtt ccaccacttc 4681 tcgtcgaagg ccgagatcat ggccgatttg cagcgggtcg agttcgagcc cgcggtgcgg 4741 atcctggacg ccgcccggag cctgcccggc tcagcgtcgg cccgcctgtt ctgtgccctc 4801 ttcctggact ttcgccggct gctcctgttg ccgtacgact tgggcgccac caccacggcc 4861 gaggtgctca acgagcctgc cctggccgat cagcggctcg tctgggaccg cctcctcgcc 4921 gcccagggca cgctgatcac agacggcatt gctgacggcg agctgctcga cctcgatgcc 4981 gacttcgcca accgcgccgt ggcctggctg atcgagggcg cctacatcga cgccagccgg 5041 cgcgaggaca tagatcccac agagttcgcc gaccaggtcg cgtccttctc gctcagggcc 5101 ctgctcgtcg acgacgcccg ctgcgaccgg gtgcggaccg aggcgctcgg cctagtcgag 5161 gaactggagg ccgcggccca cctgtcgtcg gagatgtgcc caagcccgcc tcgggcagac 5221 aatcagcggt gaccggccgc ctccagcatg ggaactgacc tgaccggcgg gttgagcgaa 5281 gagctggact acgtcttcgc gacgcggccc gacgaaccgg agatgcgcga gtcggtcaac 5341 gtatggctgt gggacaaggg cgatcggatc ggcattcccc ggatcgggat cgaggcggtg 5401 gccgagcggt ggcacgccca cgacgtgcag gtgaacatcg ccagcggcga cggacgggtg 5461 ttcaaccggt acggcacggg cgacgcccac gatccgctca acgctcaggg ccggccggcc 5521 acgctgggcg cgggcccgct ctcgttcgag tgtgtcgagc cgttccggca ctggcgtatg 5581 cgcttctacg gccgagtgca cgagtggacc tgcgacgagc agatcgccgg cggccagccg 5641 ccgtcggagc cgtcggtgcg ggtgcagatc gacgtagacc tgcactctgc ggtgccgccg 5701 tgggtcaacg gcgggctcct gcccgaggtc aagcgggtac tcgaggagca ggacgagggg 5761 gcgctcatcg gcggcccccg gttcgagcag ctcgcccgcg cccggggcac ggtcgtgatc 5821 ggcgatgtcg agcaccgcat cgacggcggc gccctgcgca tccgccgccg gggcgtccgc 5881 cggctcggga cgttccgggg ccacgcctgg cagtcggctc tgttcggcag tggccgtgcg 5941 ttcggctacc tcgtgttccc gccgcgtgac gacggcctcc ccacctacaa cgagggcttc 6001 atcttcaccg gcgacggcga actcatccct gcctgggtgg tcgacgcccc ctggctcaaa 6061 cacctccagc atcacggcga cgacgccacg gtggtgatcg agtccgagca aggcaccacc 6121 acgatcgagg ccgagaccgt catgtcgacg ttcatggtga tgggaggcgt cggaccgggc 6181 accgagggat acccggtgct ccagcaggcc gtgacccgct tccgctggga cggcgaagag 6241 gccaacggga tgatggagcg gtcggtaccc gggaacctca tcgagccatg agccgaaccg 6301 gtgccgcacc gccgacggtg gcttcgagga tcgacgacct catcggcgag gccagggctc 6361 agacagggct cgataacttc ggcggcgaca cctggcgaga gggcctcgag gtgctgatcc 6421 gctcagcgac gaccgaggca acgctgagcg acatgggaga gcacgggttc aaccgtgcgg 6481 tgcttcgagc cctcaccaac cgcctgaagg tggaggactg gtaccggcgc caccccgaga 6541 tcgacgagca gaccgtcgag atcgagttcg tgggggtcgg cctgccccgc acgggctcga 6601 ccgcgctgtc gcacctgctg ggcgaggacc cggccttccg caatctgcgc acctgggagg 6661 agggcgaccc gtgcccgccg ccgggcgtgg acgcggccgc cgaccaggcc cgcatcgacg 6721 ccacccagat ggtgctggag atggcccatg gccatatggc ggcccggctg cgctcgatgc 6781 tgccgcagtc ggccaccggc ccgatggagg accacaacct catggccatg gagttcaagg 6841 cccagttctt cctggtcatg ggccacatgc ccacatacgg ccactggttc gcccactgcg 6901 acatggagcc gacctaccgg tacgccgagc gcgtcct //