LOCUS VXUO01000276 3324 bp DNA linear ENV 09-JAN-2020 DEFINITION Gammaproteobacteria bacterium isolate SB0666_bin_30 NODE_11053_length_3324_cov_3.404711, whole genome shotgun sequence. ACCESSION VXUO01000276 VXUO01000000 VERSION VXUO01000276.1 DBLINK BioProject: PRJNA555144 BioSample: SAMN12598425 KEYWORDS WGS. SOURCE Gammaproteobacteria bacterium (sponge metagenome) ORGANISM Gammaproteobacteria bacterium Bacteria; Proteobacteria; Gammaproteobacteria. REFERENCE 1 (bases 1 to 3324) AUTHORS Engelberts,J.P., Robbins,S.J., De Goeij,J.M., Aranda,M., Bell,S.C. and Webster,N.S. TITLE Characterisation of the sponge microbiome using genome-centric metagenomics JOURNAL Unpublished REFERENCE 2 (bases 1 to 3324) AUTHORS Robbins,S.J., Engelberts,J.P. and Webster,N.S. TITLE Direct Submission JOURNAL Submitted (12-SEP-2019) Australian Centre for Ecogenomics, University of Queensland, Coopers Camp Road, Brisbane 4065, Australia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: metaSPades v. v3.9.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 5.455622x Sequencing Technology :: Illumina NextSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/20/2019 12:11:49 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,776 CDSs (total) :: 3,757 Genes (coding) :: 3,423 CDSs (with protein) :: 3,423 Genes (RNA) :: 19 rRNAs :: 1 (16S) partial rRNAs :: 1 (16S) tRNAs :: 16 ncRNAs :: 2 Pseudo Genes (total) :: 334 CDSs (without protein) :: 334 Pseudo Genes (ambiguous residues) :: 235 of 334 Pseudo Genes (frameshifted) :: 76 of 334 Pseudo Genes (incomplete) :: 47 of 334 Pseudo Genes (internal stop) :: 15 of 334 Pseudo Genes (multiple problems) :: 37 of 334 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3324 /organism="Gammaproteobacteria bacterium" /mol_type="genomic DNA" /submitter_seqid="NODE_11053_length_3324_cov_3.404711" /isolate="SB0666_bin_30" /host="Ircinia ramosa" /db_xref="taxon:1913989" /environmental_sample /geo_loc_name="Australia: Great Barrier Reef" /lat_lon="18.49 S 147.38 E" /collection_date="Oct-2016" /metagenome_source="sponge metagenome" /note="metagenomic" gene <1..1149 /locus_tag="F4Z28_06445" CDS <1..1149 /locus_tag="F4Z28_06445" /inference="COORDINATES: protein motif:HMM:PF02661.16" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="Fic family protein" /protein_id="MYA16426.1" /translation="FLHGLFLSSTARAYLDNLRPSRARAGRSRRTLTRQEMETRLDDL VRRAGAGAANRLRDEARAIAAELDRGAELATLSKLISSLSGTHAGRLTTPVGRARRRG RPYDARRLEQFGTLHAALRAEPPTMRAALPRDAAQQTVLSFFEAYYSNYIEGTEFTVD EAVEIVFQGRIPASRPADAHDIEGTWRLASDPDEMNLLPRDSSELLEILRHRHSTILG SRPEVLPGEFKRAPNQSGGNVFVMPEDVVGTLEQAFPLYRSLETAFQRAVFLLYLVSE VHPFADGNGRVARIMMNAELASRNEERIVIPTVYRGNYLAALRAMSHNNVAEPLIRSL DYAQRWTGAIRWRTVADATGQLTKCNAFLESEVAENQGLRLRMPHGDV" gene complement(1348..3009) /locus_tag="F4Z28_06450" CDS complement(1348..3009) /locus_tag="F4Z28_06450" /inference="COORDINATES: protein motif:HMM:PF07969.9" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="amidohydrolase family protein" /protein_id="MYA16427.1" /translation="MAHDLVIRNGTVVDGIGNEPIQADIAIDGDSIAAIGPVAGRGAE EIDAKGHVVTPGFIDLHTHLDAQIGWDPEMTSVTWHGVTTALLGNCGVTFAPCRKEDR EFLAGMMETVEDIPKHAILTGLPWDWESYGGYLDSIERLGPMINVCGLVGHSATRFYV MGERAIEEQATPEEIEQIAALAGQSVREGALGFSVNRHPGHTLPDRRPIPGTFASREE LIAIARAVGAEGGIMQTVPNFSKVDEEMDIMAEEAETSRILFSAIGEHREPLDHNVTE MRAKGLDVTGITVPRSGGGVGGLAANVMWWTPTWRKLNKLDFEARLAAIQDESFRAKL VAEVRDNEQTNEHALRVTKRWYPLGDGARPNYTQSRYESLADIAQAAGEHPTEAWLRL TLESDGKVLFHQRGFNVNLENLEKLITTDWAMPGLGDAGAHVSQMIDSGWATFVLSHW YRDKGTYTLPEAVRRITSVPAHVLGLNDRGTLAVGAKADINVIDVDRLEERQPYMVHD FPGGAPRFQQRAAGYKATVCNGKVTLRDDDHTGVCAGNVLRNGAA" gene complement(3092..3307) /locus_tag="F4Z28_06455" CDS complement(3092..3307) /locus_tag="F4Z28_06455" /inference="COORDINATES: ab initio prediction:GeneMarkS-2+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS-2+." /codon_start=1 /transl_table=11 /product="type II toxin-antitoxin system VapC family toxin" /protein_id="MYA16428.1" /translation="MIASVLGQILRTTEFTVEDGDLAWHALREFENGDAGFADCLLAH RNRSRGCSTTFTFDGKAAKGRHFTLVT" BASE COUNT 557 a 1096 c 1055 g 616 t ORIGIN 1 ttcctgcacg gtctcttcct gagttccacc gcccgggcat acctcgacaa cctgcgacca 61 tcccgggcac gcgccggcag atcacggcgc acattgaccc gtcaggaaat ggagacccga 121 ctcgacgatc tggttcgtcg cgccggcgcc ggtgcagcga accgccttcg cgacgaggct 181 cgggccatcg ccgccgaact cgaccgaggc gcggagttgg ccaccctctc gaaactgatc 241 agctccctct ccggaaccca tgcaggtcgc ctgacgacac cagtgggccg cgcaagacgg 301 cgtggacgac cgtacgatgc tcgccgcctt gagcaattcg gaacgcttca cgcggcgctc 361 cgggccgaac cgccgaccat gcgggctgca ctgcctcggg acgccgcaca gcaaactgtg 421 ctgagcttct tcgaggccta ctactccaac tacatcgaag gcaccgagtt caccgtcgat 481 gaagctgtcg agatcgtgtt ccaggggcgg attcccgcca gccggcccgc cgatgcccac 541 gacatcgagg gtacgtggcg gttggcgtca gatcccgacg aaatgaacct cctgcctaga 601 gacagcagtg agcttctcga aatcctacgt caccggcatt ccacgatatt gggaagtcgg 661 cccgaggtgc tgccggggga gttcaagcgc gcgcccaacc agtcgggtgg gaacgtattc 721 gtgatgcccg aggatgtggt cggcacgttg gagcaagcgt ttccgcttta tcgaagtctg 781 gagacggcgt ttcagcgggc ggtatttctg ctgtacctag tgagcgaggt ccacccgttc 841 gccgacggca acggtcgggt cgcgcgcatc atgatgaacg cggaactcgc gagccggaac 901 gaagaacgca tcgtgattcc caccgtgtac cggggcaact acctggccgc gctgcgggcc 961 atgtcgcaca acaacgtagc ggaacctcta atccgatcgc ttgactacgc gcaacgctgg 1021 acaggcgcca ttcgttggcg aaccgtcgcc gacgcgaccg ggcaactcac caagtgcaac 1081 gcgtttctcg agtccgaggt tgccgagaat caaggtctac gccttcgaat gccgcacggc 1141 gatgtttgac gatgatgggt tgtacgtcag gcgccggccg tgggccggtc attccactgg 1201 ctcgacttgt ggttgttcct ggtcgtccgc cggcagcgac ccaaggagtc tagcgatgcc 1261 gagcaacagc aacgggatga cgacgatgga ccggcggcga ggagtcaccc ggcggcggaa 1321 accgtgcccc atcggccgag ccgagttcta cgcggctccg ttccgcagaa cattccccgc 1381 acaaacgccc gtgtggtcgt cgtcacgtag cgtgaccttc ccgttgcaga ccgtcgcctt 1441 gtagcctgcg gcccgctgct ggaaccgtgg tgcgcctccc gggaagtcgt gcaccatgta 1501 cggctggcgc tcctccaagc ggtcgacgtc gatgacgttg atgtccgcct tggcacccac 1561 ggccaaggtt ccgcggtcat tgagcccaag cacatgggcc ggcaccgagg tgatccgtcg 1621 cacggcctcg ggcaacgtgt aggtgccctt gtcccggtac cagtgggaga gcacgaaggt 1681 cgcccagccc gagtcgatca tctggctgac gtgggcgccc gcgtcgccga gccccggcat 1741 cgcccaatcg gtggtgatga gcttctccag gttctcaagg ttcacgttga agccgcgctg 1801 gtggaacaac accttgccat cgctctccaa cgtcagacgg agccaagcct cggtcggatg 1861 ctcgcctgcg gcctgcgcga tgtcggcgag gctttcgtag cgagactggg tgtagttcgg 1921 ccgcgcgccg tcgcccaagg gataccagcg tttggtgacg cgcagggcgt gttcgttggt 1981 ttgctcgttg tcgcgcactt cggccacgag tttggctcgg aagctctcgt cctggatcgc 2041 cgcgagccgg gcctcgaagt cgagcttgtt caatttccgc caggtcggcg tccaccacat 2101 gacattcgcc gccagtccgc ccacgccgcc gccgctgcgt ggaaccgtga tgccggtgac 2161 atcgagaccc ttggcgcgca tctcggtgac gttgtggtcc aagggctcgc gatgttcgcc 2221 gatggcgctg aagaggattc ggctggtctc ggcctcctcc gccatgatgt ccatctcctc 2281 gtccaccttc gagaagttcg gcaccgtctg catgatgccg ccctcggccc ccacggcccg 2341 ggcgatggcg atgagttcct ccctcgacgc aaacgtgccg gggatcggcc gccgatccgg 2401 cagcgtgtgg ccgggatgcc ggttgacgga gaaaccgagt gccccttccc tgaccgactg 2461 tccggcaagt gcagcgatct gttcgatctc ctccggggtc gcctgttcct cgatggcgcg 2521 ttcgcccata acgtagaagc gggtggcgct gtgtccgacc agcccgcaga cgttgatcat 2581 cggccctagg cgctcgatgg agtccaggta gccgccgtag gactcccagt cccagggcag 2641 gccggtgagg atcgcgtgct tggggatgtc ctcgacggtc tccatcatgc cggcgaggaa 2701 ctcgcggtcc tccttgcgac acggtgcgaa ggtgaccccg cagttgccga gcagcgcggt 2761 ggtgacgccg tgccaggtga ccgacgtcat ctcgggatcc cagccgatct gcgcatcgag 2821 gtgggtgtgc aggtcgatga atcccggcgt gacgacgtgg cccttggcgt cgatctcctc 2881 ggcaccgcgc cccgctacgg gtccgatggc cgcgatgctg tcgccgtcga tggcgatgtc 2941 ggcctgaatc ggctcgttgc cgattccgtc gacaacggtg ccgttgcgaa tcaccaagtc 3001 gtgtgccatt tgctcctccc cccgttccga taggcaagcg gcgtactatg ccacaagtgt 3061 gagcgcggtc ttgcgattga ccgcgcgaac ctcaagtaac gagcgtgaaa tggcgccctt 3121 tcgctgcctt gccgtcgaac gtaaacgtcg tcgagcagcc cctcgagcgg ttccggtggg 3181 ccagcaggca atccgcgaag cccgcatcgc cattctcgaa ctcgcgcagg gcatgccatg 3241 ccaggtcgcc atcttccacg gtgaactcgg tggtgcgcag gatttggcct agcaccgacg 3301 cgatcacgtc cctttggtag tcat //