LOCUS VWUI01000234 3297 bp DNA linear BCT 21-SEP-2019 DEFINITION Pantoea sp. M_5 Scaffold_232, whole genome shotgun sequence. ACCESSION VWUI01000234 VWUI01000000 VERSION VWUI01000234.1 DBLINK BioProject: PRJNA563888 BioSample: SAMN12692266 KEYWORDS WGS. SOURCE Pantoea sp. M_5 ORGANISM Pantoea sp. M_5 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea. REFERENCE 1 (bases 1 to 3297) AUTHORS Tufail,M.R. and Cook,D.R. TITLE Genomic diversity of phyloplane-associated Pantoea species in Pakistan cotton crop JOURNAL Unpublished REFERENCE 2 (bases 1 to 3297) AUTHORS Tufail,M.R. and Cook,D.R. TITLE Direct Submission JOURNAL Submitted (10-SEP-2019) Plant Pathology, Cook Lab - University of California at Davis, One Shields Ave, Davis, CA 95616, USA COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 17-AUG-2018 Assembly Method :: SPAdes v. 3.10.1 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 166.470779x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/16/2019 03:27:43 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.9 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,906 CDSs (total) :: 5,805 Genes (coding) :: 4,582 CDSs (with protein) :: 4,582 Genes (RNA) :: 101 rRNAs :: 5, 1, 2 (5S, 16S, 23S) complete rRNAs :: 3, 1, 1 (5S, 16S, 23S) partial rRNAs :: 2, 1 (5S, 23S) tRNAs :: 86 ncRNAs :: 7 Pseudo Genes (total) :: 1,223 CDSs (without protein) :: 1,223 Pseudo Genes (ambiguous residues) :: 0 of 1,223 Pseudo Genes (frameshifted) :: 80 of 1,223 Pseudo Genes (incomplete) :: 1,155 of 1,223 Pseudo Genes (internal stop) :: 32 of 1,223 Pseudo Genes (multiple problems) :: 40 of 1,223 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3297 /organism="Pantoea sp. M_5" /mol_type="genomic DNA" /submitter_seqid="Scaffold_232" /strain="M_5" /isolation_source="leaves" /host="Gossypium hirsutum" /db_xref="taxon:2608038" /geo_loc_name="Pakistan: Multan, Punjab" /collection_date="2016-07-19" /collected_by="Muhammad Rizwan Tufail" gene complement(<1..911) /locus_tag="F3I50_28615" CDS complement(<1..911) /locus_tag="F3I50_28615" /EC_number="2.6.1.42" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312731.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="branched-chain amino acid transaminase" /protein_id="KAA5983831.1" /translation="MSTKKADFIWFNGEMVKWEEAKVSVMSHALHYGTSVFEGVRCYD SHKGPVVFRHREHMQRLHDSAKIYRFPIKSSVDELMEACREVIRVNKLKSAYIRPLAF VGDVGLGVNPPDGFTTDVIIAAFPWGAYLGAEALENGIDAMVSSWNRVAPNTLPTAAK AGGNYLSSLLVGSEARRHGYQEGIALDTNGLISEGAGENLFEVKDGVLFTPPFTSSAL PGITRDAIITLARDMGIEVREQTLSRESLYLADEVFMSGTAAEITPVRSVDRIQVGEG KCGPVTKRIQQAFFGLFTGETEDKWGW" gene complement(930..1187) /gene="ilvM" /locus_tag="F3I50_28620" CDS complement(930..1187) /gene="ilvM" /locus_tag="F3I50_28620" /EC_number="2.2.1.6" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_017800629.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="acetolactate synthase 2 small subunit" /protein_id="KAA5983832.1" /translation="MNQHQLSIEARFRPEILERILRVVRHRGFQVCSMNMASVANAEN INIEMTVASQRSVDLLSSQLSKLIDVACVQIQQQTTQQIRA" gene complement(1184..2980) /locus_tag="F3I50_28625" CDS complement(1184..2980) /locus_tag="F3I50_28625" /EC_number="2.2.1.6" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_006328778.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="acetolactate synthase 2 catalytic subunit" /protein_id="KAA5983833.1" /translation="MTGAQWVVQALRAQGVDTVFGYPGGAIMPVYDALYDGGVEHLLC RHEQGAVMAAIGYARSTGKTGVCIATSGPGATNLITGLADAMMDSVPIVAVTGQVSSA FIGTDAFQEIDVLGLSLACTKHSFLVESLDELAMMDSVPIVAVTGQVSSAFIGTDAFQ EIDVLGLSLACTKHSFLVESLDELPAIMAEAFAMAQSGRPGPVLVDIPKDIQIAQGEP APHLVSVEEEESLPHHAIREARAIMTQARKPMLYVGGGVGMAQAVPALRAFAAETGIP AVATLKGLGSVDAQSEVYLGMLGMHGTKAANYAVQACDLLIAVGARFDDRVTGKLDTF APHASVIHLDIDPAELNKLRRAHVSLQGDLNALLPALSQPLHIDAWRDEVKALKASHA WRYDHPGEAIYAPLLLKQLSERKPDSAVVTTDVGQHQMWTAQHMAFSAPENFITSSGL GTMGFGLPAAIGAQVARPEDTVICVSGDGSIMMNIQELGTIKRGKLPVKIVLLDNQRL GMVRQWQQLFFDGRYSETNLSDNPDFLTLASAFNIPGQRITRKDQVDAALDALLNSEG PYFLHVAIDEHENVWPLVPPGASNANMMEKTV" gene complement(3131..3229) /gene="ilvL" /locus_tag="F3I50_28630" CDS complement(3131..3229) /gene="ilvL" /locus_tag="F3I50_28630" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_312728.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="ilv operon leader peptide" /protein_id="KAA5983834.1" /translation="MKALLQVISLVVISVVVVINLPCGATLGERKA" BASE COUNT 734 a 947 c 896 g 719 t ORIGIN 1 aaccagcccc atttgtcttc ggtctcaccc gtgaacagac caaagaaggc ctgctggatg 61 cgtttggtga ccgggccaca tttgccttcg cccacctgaa tgcggtcaac gctgcgcact 121 ggtgtgattt ctgccgcggt gccagacata aagacttcat cagccagata gagagattca 181 cgagacagag tctgctcacg cacttcaatg cccatatcac gcgccagcgt aatgatcgca 241 tcgcgcgtga tgcccggcag tgccgaagag gtaaatggcg gggtaaagag cacgccatct 301 ttaacttcaa acaggttttc gcctgcacct tctgaaatca ggccattggt atccagcgca 361 atgccttcct gatagccatg acgacgggct tcgctgccca ccagcagtga ggagaggtag 421 ttaccacccg ctttagcagc agttggcaga gtgtttggcg ctacgcggtt ccatgaagag 481 accatcgcat caataccatt ctccagcgct tcagcgccca gatacgcgcc ccacgggaag 541 gcggcaatga tcacgtcagt cgtgaagccg tctggcgggt ttacgcccag gcccacatcg 601 ccgacaaagg ccagtggacg gatataagca cttttcagtt tgttcacgcg gatgacttcg 661 cggcacgctt ccatcagctc atcaacgctg cttttaatcg ggaaacggta gattttggcg 721 gagtcgtgca gacgttgcat gtgttcacgg tggcggaaca caaccggtcc tttgtgagag 781 tcgtagcagc ggacgccttc aaacaccgac gtgccatagt gcaacgcgtg ggacatgacg 841 ctgaccttcg cctcttccca cttaaccatc tcgccattga accaaataaa gtctgctttc 901 ttcgtgctca ttgttattcc ctctcgcggc taggcgcgga tttgttgtgt tgtctgttgt 961 tgaatctgaa cgcatgcaac gtcaatcaat ttacttaact gcgaagacag taaatcgacg 1021 gagcgctggc tggcaacggt catttcaata ttaatgtttt ccgcgttggc gactgaggcc 1081 atgttcatag aacagacctg aaaaccgcgg tggcgcacga cgcgtaaaat gcgctccaat 1141 atttcagggc ggaagcgggc ttcgatagac aattgatgct ggttcatacg gttttctcca 1201 tcatgtttgc attgctggca cccggcggta ccagtggcca gacgttttca tgctcatcaa 1261 ttgcaacatg caggaagtaa ggaccttcgc tgttcagcag agcatcaagt gcggcgtcga 1321 cctgatcttt acgggtaatg cgctggccgg gaatattgaa agcgctggcc agcgtgagga 1381 agtcgggatt gtcagagaga ttggtttcgc tgtagcgacc atcgaagaag agctgctgcc 1441 actgacgcac catgcccaga cgctggttat ccagcagcac gattttgacc ggcagctttc 1501 cgcgcttaat ggtgcccagc tcctgaatat tcatcatgat tgagccgtcg cccgagacgc 1561 agatcaccgt atcttccggg cgggcgacct gtgcaccgat ggcggcaggc aaaccaaagc 1621 ccatcgtgcc taagccactg gaggtgatga agttctccgg cgcgctgaag gccatatgct 1681 gggccgtcca catctggtgc tgtccgacat cggtggtgac caccgcactg tccggtttgc 1741 gctcggagag ctgcttcagc agcagcggtg catagattgc ctcgcctgga tgatcgtagc 1801 gccaggcatg actggccttg agtgccttca cctcgtcgcg ccaggcgtcg atgtgcaaag 1861 gctgactcag cgcgggcagc agcgcgttga gatcgccctg cagtgagacg tgcgcgcgac 1921 gtaacttatt taactctgcg gggtcgatgt cgagatgaat cacgctggcg tgcggcgcga 1981 aggtatccag cttgccggtc acccgatcgt caaaacgggc accgaccgca atcagcaggt 2041 cacacgcctg aacagcatag ttagcggctt tggtgccgtg catccccagc atgcccagat 2101 aaacctcgct ctgcgcatcg acgctgccca gacctttcag ggtcgcaacg gcagggatgc 2161 cggtttctgc tgcgaatgca cgcagtgccg gaaccgcctg cgccatgccc acgcctccgc 2221 caacatagag catcggtttt ctggcctggg tcattattgc ccgcgcctcg cggatagcat 2281 gatgcggcag cgactcttcc tcctcaaccg aaaccagatg cggtgcgggt tcaccctgcg 2341 caatctgaat atctttggga atatcaacca gtaccggacc cggacgccct gactgcgcca 2401 tggcaaaagc ctcagccatg atagcgggca gctcatccag cgactcaacc aggaagctat 2461 gtttggtgca ggccagggac agccccagca cgtcgatctc ctggaaagcg tcagtaccga 2521 taaacgcaga cgagacctga ccggttaccg caacgatcgg cacggagtcc atcatggcna 2581 gctcatccag cgactcaacc aggaagctat gtttggtgca ggccagggac agccccagca 2641 cgtcgatctc ctggaaagcg tcagtaccga taaacgcaga cgagacctga ccggttaccg 2701 caacgatcgg cacggagtcc atcatggcat cagccagacc ggtgatcagg ttggtagcgc 2761 cagggccgga ggtggcaata cagacaccgg ttttgccggt ggagcgcgca tagccaatcg 2821 cggccataac cgcaccctgc tcatgacggc acagtaggtg ttccacgccg ccatcgtata 2881 gcgcgtcgta aaccggcatg atggcgccgc cagggtaacc aaatacggta tcaacaccct 2941 gcgcacgtaa agcctgaact acccactgag cacctgtcat cgctattctc ctgtgtcctg 3001 acgggaacaa cagaatttta tgctactgtt cattgtttgt tccttgcaga tttactgata 3061 tttccccggg tcgaaaaaaa acccccggac ctttcggtgc gggggttttt tcggattcga 3121 ggcttgattt ttaagccttt ctttctccaa gcgttgcccc gcacggtagg ttaataacca 3181 ccaccacgct aatcacgacc aggctaatca cttgtagaag ggctttcatg tgttgttcaa 3241 ttcttttacg tgttcgaagt aatgcctaca gagttatcat agtcaggggc cataaca //