LOCUS HPU89349 5210 bp DNA linear VRL 02-DEC-1999
DEFINITION Human papillomavirus type 18 variant, partial sequence.
ACCESSION U89349
VERSION U89349.1
KEYWORDS .
SOURCE human papillomavirus 18
ORGANISM human papillomavirus 18
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Papovaviricetes; Zurhausenvirales; Papillomaviridae;
Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 7.
REFERENCE 1 (bases 2216 to 2355; 2538 to 3127)
AUTHORS Schneider-Gadicke,A. and Schwarz,E.
TITLE Different human cervical carcinoma cell lines show similar
transcription patterns of human papillomavirus type 18 early genes
JOURNAL EMBO J. 5 (9), 2285-2292 (1986)
PUBMED 3023067
REFERENCE 2 (bases 1 to 5210)
AUTHORS Cole,S.T. and Danos,O.
TITLE Nucleotide sequence and comparative analysis of the human
papillomavirus type 18 genome. Phylogeny of papillomaviruses and
repeated structure of the E6 and E7 gene products
JOURNAL J. Mol. Biol. 193 (4), 599-608 (1987)
PUBMED 3039146
REFERENCE 3 (bases 2146 to 4619)
AUTHORS Inagaki,Y., Tsunokawa,Y., Takebe,N., Nawa,H., Nakanishi,S.,
Terada,M. and Sugimura,T.
TITLE Nucleotide sequences of cDNAs for human papillomavirus type 18
transcripts in HeLa cells
JOURNAL J. Virol. 62 (5), 1640-1646 (1988)
PUBMED 2833614
REFERENCE 4 (bases 1750 to 2070)
AUTHORS Ong,C.K., Chan,S.Y., Campo,M.S., Fujinaga,K., Mavromara-Nazos,P.,
Labropoulou,V., Pfister,H., Tay,S.K., ter Meulen,J., Villa,L.L. and
Bernard,H.-U.
TITLE Evolution of human papillomavirus type 18: an ancient phylogenetic
root in Africa and intratype diversity reflect coevolution with
human ethnic groups
JOURNAL J. Virol. 67 (11), 6424-6431 (1993)
PUBMED 8411344
REFERENCE 5 (bases 1 to 5210)
AUTHORS Meissner,J.D.
TITLE Nucleotide sequences and further characterization of human
papillomavirus DNA present in the CaSki, SiHa and HeLa cervical
carcinoma cell lines
JOURNAL J. Gen. Virol. 80 (Pt 7), 1725-1733 (1999)
PUBMED 10423141
REFERENCE 6 (bases 1 to 5210)
AUTHORS Meissner,J.D.
TITLE Direct Submission
JOURNAL Submitted (10-FEB-1997) VEHB, Centers for Disease Control and
Prevention, 1600 Clifton Road NE, Atlanta, GA 30333, USA
FEATURES Location/Qualifiers
source 1..5210
/organism="human papillomavirus 18"
/mol_type="genomic DNA"
/strain="type 18 variant"
/db_xref="taxon:333761"
/lab_host="HeLa cervical carcinoma cell line (ATCC CCL2)"
variation 140
/replace="c"
variation 666
/replace="a"
misc_difference 725
/note="conflict; see reference HPV-18 sequence in GenBank
Accession Number X05015"
/citation=[2]
/replace="c"
misc_difference 890
/note="conflict; see reference HPV-18 sequence in GenBank
Accession Number X05015"
/citation=[2]
/replace="c"
misc_difference 1107
/note="conflict; see reference HPV-18 sequence in GenBank
Accession Number X05015"
/citation=[2]
/replace="c"
variation 1523
/replace="t"
variation 1751
/replace="c"
variation 1794
/replace="c"
variation 1832
/replace="a"
variation 1857
/replace="t"
variation 1935
/replace="a"
variation 2226
/replace="t"
misc_difference 2291
/note="conflict; see HPV-18 sequence in GenBank Accession
Number M26798"
/citation=[1]
/replace="g"
misc_difference 2409
/note="conflict; see reference HPV-18 sequence in GenBank
Accession Number X05015"
/citation=[2]
/replace="c"
variation 2607
/replace="t"
variation 2671
/replace="c"
variation 2873
/replace="c"
variation 2928
/replace="g"
variation 3134
/replace="a"
variation 3316
/replace="c"
variation 3475
/replace="t"
variation 3929
/replace="t"
variation 3965
/replace="t"
variation 4391
/replace="c"
BASE COUNT 1655 a 921 c 1125 g 1509 t
ORIGIN
1 ttattaactg ttggtaatcc atattttagg gttcctgcag gtggtggcaa taagcaggat
61 attcctaagg tttctgcata ccaatataga gtatttaggg tgcagttacc tgacccaaat
121 aaatttggtt tacctgataa tagtatttat aatcctgaaa cacaacgttt agtgtgggcc
181 tgtgctggag tggaaattgg ccgtggtcag cctttaggtg ttggccttag tgggcatcca
241 ttttataata aattagatga cactgaaagt tcccatgccg ccacgtctaa tgtttctgag
301 gacgttaggg acaatgtgtc tgtagattat aagcagacac agttatgtat tttgggctgt
361 gcccctgcta ttggggaaca ctgggctaaa ggcactgctt gtaaatcgcg tcctttatca
421 cagggcgatt gccccccttt agaacttaaa aacacagttt tggaagatgg tgatatggta
481 gatactggat atggtgccat ggactttagt acattgcaag atactaaatg tgaggtacca
541 ttggatattt gtcagtctat ttgtaaatat cctgattatt tacaaatgtc tgcagatcct
601 tatggggatt ccatgttttt ttgcttacgg cgtgagcagc tttttgctag gcatttttgg
661 aatagggcag gtactatggg tgacactgtg cctcaatcct tatatattaa aggcacaggt
721 atgcgtgctt cacctggcag ctgtgtgtat tctccctctc caagtggctc tattgttacc
781 tctgactccc agttgtttaa taaaccatat tggttacata aggcacaggg tcataacaat
841 ggtgtttgct ggcataatca attatttgtt actgtggtag ataccactcg cagtaccaat
901 ttaacaatat gtgcttctac acagtctcct gtacctgggc aatatgatgc taccaaattt
961 aagcagtata gcagacatgt tgaggaatat gatttgcagt ttatttttca gttgtgtact
1021 attactttaa ctgcagatgt tatgtcctat attcatagta tgaatagcag tattttagag
1081 gattggaact ttggtgttcc ccccccgcca actactagtt tggtggatac atatcgtttt
1141 gtacaatctg ttgctattac ctgtcaaaag gatgctgcac cggctgaaaa taaggatccc
1201 tatgataagt taaagttttg gaatgtggat ttaaaggaaa agttttcttt agacttagat
1261 caatatcccc ttggacgtaa atttttggtt caggctggat tgcgtcgcaa gcccaccata
1321 ggccctcgca aacgttctgc tccatctgcc actacgtctt ctaaacctgc caagcgtgtg
1381 cgtgtacgtg ccaggaagta atatgtgtgt gtgtatatat atatacatct attgttgtgt
1441 ttgtatgtcc tgtgtttgtg tttgttgtat gattgcattg tatggtatgt atggttgttg
1501 ttgtatgttg tatgttacta taattgttgg tatgtggcat taaataaaat atgttttgtg
1561 gttctgtgtg ttatgtggtt gcgccctagt gagtaacaac tgtatttgtg tttgtggtat
1621 gggtgttgct tgttgggcta tatattgtcc tgtatttcaa gttataaaac tgcacacctt
1681 acagcatcca ttttatccta caatcctcca ttttgctgtg caaccgattt cggttgcctt
1741 tggcttatgt ttgtggtttt ctgcacaata cagtacgctg gcactattgc aaaatttaat
1801 cttttgggca ctgctcctac atattttgaa ccattggcgc gcctctttgg cgcatacaag
1861 gcgcacctgg tattagtcat tttcctgtcc aggtgcgcta caacaattgc ttgcataact
1921 atatccactc cctatgtaat aaaactgctt ttaggcacat attttagttt gtttttactt
1981 aagctaattg catacttggc ttgtacaact actttcatgt ccaacattct gtctaccctt
2041 aacatgaact ataatatgac taagctgtgc atacatagtt tatgcaaccg aaataggttg
2101 ggcagcacat actatacttt tcattaatac ttttaacaat tgtagtatat aaaaaaggga
2161 gtaaccgaaa acggtcggga ccgaaaacgg tgtatataaa agatgtgaga aacacaccac
2221 aataccatgg cgcgctttga ggatccaaca cggcgaccct acaagctacc tgatctgtgc
2281 acggaactga acacttcact gcaagacata gaaataacct gtgtatattg caagacagta
2341 ttggaactta cagaggtatt tgaatttgca tttaaagatt tatttgtggt gtatagagac
2401 agtataccgc atgctgcatg ccataaatgt atagattttt attctagaat tagagaatta
2461 agacattatt cagactctgt gtatggagac acattggaaa aactaactaa cactgggtta
2521 tacaatttat taataaggtg cctgcggtgc cagaaaccgt tgaatccagc agaaaaactt
2581 agacacctta atgaaaaacg acgattccac aacatagctg ggcactatag aggccagtgc
2641 cattcgtgct gcaaccgagc acgacaggaa agactccaac gacgcagaga aacacaagta
2701 taatattaag tatgcatgga cctaaggcaa cattgcaaga cattgtattg catttagagc
2761 cccaaaatga aattccggtt gaccttctat gtcacgagca attaagcgac tcagaggaag
2821 aaaacgatga aatagatgga gttaatcatc aacatttacc agcccgacga gctgaaccac
2881 aacgtcacac aatgttgtgt atgtgttgta agtgtgaagc cagaattaag ctagtagtag
2941 aaagctcagc agacgacctt cgagcattcc agcagctgtt tctgaacacc ctgtcctttg
3001 tgtgtccgtg gtgtgcatcc cagcagtaag caacaatggc tgatccagaa ggtacagacg
3061 gggagggcac gggttgtaac ggctggtttt atgtacaagc tattgtagac aaaaaaacag
3121 gagatgtaat atctgatgac gaggacgaaa atgcaacaga cacagggtcg gatatggtag
3181 attttattga tacacaagga acattttgtg aacaggcaga gctagagaca gcacaggcat
3241 tgttccatgc gcaggaggtc cacaatgatg cacaagtgtt gcatgtttta aaacgaaagt
3301 ttgcaggagg cagcaaagaa aacagtccat taggggagcg gctggaggtg gatacagagt
3361 taagtccacg gttacaagaa atatctttaa atagtgggca gaaaaaggca aaaaggcggc
3421 tgtttacaat atcagatagt ggctatggct gttctgaagt ggaagcaaca cagaatcagg
3481 taactacaaa tggcgaacat ggcggcaatg tatgtagtgg cggcagtacg gaggctatag
3541 acaacggggg cacagagggc aacaacagca gtgtagacgg tacaagtgac aatagcaata
3601 tagaaaatgt aaatccacaa tgtaccatag cacaattaaa agacttgtta aaagtaaaca
3661 ataaacaagg agctatgtta gcagtattta aagacacata tgggctatca tttacagatt
3721 tagttagaaa ttttaaaagt gataaaacca cgtgtacaga ttgggttaca gctatatttg
3781 gagtaaaccc aacaatagca gaaggattta aaacactaat acagccattt atattatatg
3841 cccatattca atgtctagac tgtaaatggg gagtattaat attagccctg ttgcgttaca
3901 aatgtggtaa gagtagacta acagttgcca aaggtttaag tacgttgtta cacgtacctg
3961 aaacgtgtat gttaattcaa ccaccaaaat tgcgaagtag tgttgcagca ctatattggt
4021 atagaacagg aatatcaaat attagtgaag taatgggaga cacacctgag tggatacaaa
4081 gacttactat tatacaacat ggaatagatg atagcaattt tgatttgtca gaaatggtac
4141 aatgggcatt tgataatgag ctgacagatg aaagcgatat ggcatttgaa tatgccttat
4201 tagcagacag caacagcaat gcagctgcct ttttaaaaag caattgccaa gctaaatatt
4261 taaaagattg tgccacaatg tgcaaacatt ataggcgagc ccaaaaacga caaatgaata
4321 tgtcacagtg gatacgattt agatgttcaa aaatagatga agggggagat tggagaccaa
4381 tagtgcaatt tctgcgatac caacaaatag agtttataac atttttagga gccttaaaat
4441 catttttaaa aggaaccccc aaaaaaaatt gtttagtatt ttgtggacca gcaaatacag
4501 gaaaatcata ttttggaatg agttttatac actttataca aggagcagta atatcatttg
4561 tgaattccac tagtcatttt tggttggaac cgttaacaga tactaaggtg gccatgttag
4621 atgatgcaac gaccacgtgt tggacatact ttgataccta tatgagaaat gcgttagatg
4681 gcaatccaat aagtattgat agaaagcaca aaccattaat acaactaaaa tgtcctccaa
4741 tactactaac cacaaatata catccagcaa aggataatag atggccatat ttagaaagta
4801 gaataacagt atttgaattt ccaaatgcat ttccatttga taaaaatggc aatccagtat
4861 atgaaataaa tgacaaaaat tggaaatgtt tttttgaaag gacatggtcc agattagatt
4921 tgcacgagga agaggaagat gcagacaccg aaggaaaccc tttcggaacg tttaagtgcg
4981 ttgcaggaca aaatcataga ccactatgaa aatgacagta aagacataga cagccaaata
5041 cagtattggc aactaatacg ttgggaaaat gcaatattct ttgcagcaag ggaacatggc
5101 atacagacat taaaccacca ggtggtgcca gcctataaca tttcaaaaag taaagcacat
5161 aaagctattg aactgcaaat ggccctacaa ggccttgcac aaagtgcata
//