LOCUS AH003640 7126 bp DNA linear ROD 10-JUN-2016 DEFINITION Mus musculus chromosome 5 extracellular matrix associated protein (Sc1) gene, complete cds. ACCESSION AH003640 U66157 U66158 U66159 U66160 U66161 U66162 U66163 U66164 U66165 U66166 VERSION AH003640.2 KEYWORDS . SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 7126) AUTHORS McKinnon,P.J., Kapsetaki,M. and Margolskee,R.F. TITLE The exon structure of the mouse Sc1 gene is very similar to the mouse Sparc gene JOURNAL Genome Res. 6 (11), 1077-1083 (1996) PUBMED 8938431 REFERENCE 2 (bases 1 to 7126) AUTHORS McKinnon,P.J. TITLE Direct Submission JOURNAL Submitted (06-AUG-1996) Genetics, St. Jude Children's Research Hospital, 332 North Lauderdale, Memphis, TN 38101, USA COMMENT On or before Jun 10, 2016 this sequence version replaced U66157.1, U66158.1, U66159.1, U66160.1, U66161.1, U66162.1, U66163.1, U66164.1, U66165.1, U66166.1, AH003640.1. FEATURES Location/Qualifiers source 1..7126 /organism="Mus musculus" /mol_type="genomic DNA" /db_xref="taxon:10090" /chromosome="5" /map="5E4" gene 658..6949 /gene="Sc1" mRNA join(658..967,1251..1315,1633..1761,2075..3070,3499..3568, 3773..3891,4309..4429,4728..4864,5214..5362,5910..6058, 6482..6949) /gene="Sc1" exon 658..967 /gene="Sc1" /number=1 gap 1042..1141 /estimated_length=unknown exon 1251..1315 /gene="Sc1" /number=2 CDS join(1262..1315,1633..1761,2075..3070,3499..3568, 3773..3891,4309..4429,4728..4864,5214..5362,5910..6058, 6482..6510) /gene="Sc1" /note="similar to to Mus musculus Sparc and human hevin; secreted glycoprotein" /codon_start=1 /product="extracellular matrix associated protein" /protein_id="AAB06444.1" /translation="MKAVLLLLCALGTAVAIPTSTRFLSDHSNPTTATLVTPEDATVP IAGVEATADIENHPNDKAEKPSALNSEEETHEQSTEQDKTYSFEVDLKDEEDGDGDLS VDPTEGTLTLDLQEGTSEPQQKSLPENGDFPATVSTSYVDPNQRANITKGKESQEQPV SDSHQQPNESSKQTQDLKAEESQTQDPDIPNEEEEEEEEEEEEEEEEPEDIGAPSDNQ EEGKEPLEEQPTSKWEGNREQSDDTLEESSQPTQISKTEKHQSEQGNQGQESDSEAEG EDKASGSKEHIPHTEQQDQEGKAGLEAIGNQKDTDEKAVSTEPTDAAVVPRSHGGAGD NGGGDDSKHGAGDDYFIPSQEFLEAERMHSLSYYLKYGGGEETTTGESENQREAADNQ EAKKAESSPNAEPSDEGNSREHSAGSCTNFQCKRGHICKTDPQGKPHCVCQDPETCPP AKILDQACGTDNQTYASSCHLFATKCRLEGTKKGHQLQLDYFGACKSIPACTDFEVAQ FPLRMRDWLKNILMQLYEPNPKHGGYLNEKQRSKVKKIYLDEKRLLAGDHPIELLLRD FKKNYHMYVYPVHWQFNELDQHPADRILTHSELAPLRASLVPMEHCITRFFEECDPNK DKHITLKEWGHCFGIKEEDIDENLLF" gap 1413..1512 /estimated_length=unknown exon 1633..1761 /gene="Sc1" /number=3 gap 1844..1943 /estimated_length=unknown exon 2075..3070 /gene="Sc1" /number=4 gap 3269..3368 /estimated_length=unknown exon 3499..3568 /gene="Sc1" /number=5 gap 3623..3722 /estimated_length=unknown exon 3773..3891 /gene="Sc1" /number=6 gap 3948..4047 /estimated_length=unknown exon 4309..4429 /gene="Sc1" /number=7 gap 4468..4567 /estimated_length=unknown exon 4728..4864 /gene="Sc1" /number=8 gap 5004..5103 /estimated_length=unknown exon 5214..5362 /gene="Sc1" /number=9 exon 5910..6058 /gene="Sc1" /number=10 gap 6197..6296 /estimated_length=unknown exon 6482..6949 /gene="Sc1" /number=11 BASE COUNT 1820 a 1396 c 1422 g 1588 t ORIGIN 1 tctctgtggg ttccagatta gctcggggcc aggtaaataa ataaataaat aaataaataa 61 ataaataaat aaatatttac atgccttgat agatgaatgc cacagtgcaa agtcagaaat 121 aagcacacag gaagacctct tcttgtacag cccggtgcca tcataggctt acagaggatg 181 actgactggg ctgggcaaga gcaggctatg aatcacagct tctctaaatc agcatgctct 241 aaagagcagc aacttcattt tccagagctg cttacgagta ggacggttaa agcagccgga 301 acggttctct gttaacgttc agactgcggt catgaggaca gcttccaatc gagcaatata 361 aaaacgcatc tgctgcagtg atccttctgt cctttcaccc tggctttgca gtcgccctag 421 gaataaacaa gagtgtgaag cctctctgca gtgtctcaga gtcacaagcc ccaagggatc 481 ccaatcatac gatctctcag agttgtttga aaaaaaaaaa tgcatgaaga gccaaatgct 541 tacactctgg ccaagttagg agcctatgag gaggagaggc taggggaggg ccgttcactc 601 catgcatgct gcagaattag ctctctccct ctgggtctgc tctgctgcaa agctcagcag 661 cacggaggga gcgagatcca ggaatctgca acagaaacca tgacagcctg aaacaccctg 721 tggtgccaac ctccaaattc tcatctgtca cttcagaccc tgactggctg acagagcagc 781 agaatttcaa ctccaataaa cgtgaatgtg cttctaggca aagcagccaa gctgacgagg 841 gaggggggtg gaagagctag ctcctcttgg gcatttgtca aacttttacc tcctggctgt 901 gtgcaaggag gggactcaac ttcggcttca agctaccaag gctctggatc cagccacctc 961 tccgcaggta aatgtaaatt tttgcttata ttgcccaact gcatgcgtta aactgacttc 1021 cctgatctaa aaagactgct tnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1141 ntagtcacct ggagagtgga cagtgtccaa cgctagtcct tgtgaaatta tctaggaacc 1201 ttcctgaagg aagcctccga ggtcactgat gctgtcttct tgatttgcag atctagccag 1261 catgaaggct gtgcttctcc tcctgtgcgc cttgggaacc gctgtggcaa tcccggtaaa 1321 tgtcctttct tctgtggtac agacctccct cttctgtctg cgtttgggag cattgtcctt 1381 cagatgctga cacaggagtc catctcaagt tcnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1501 nnnnnnnnnn nnataccata cattagtgtt atcagtgaag atagatccca gtgctggtga 1561 taatagcaag aactcagatt ttttttcagt tggcttctat atattagcaa cataaagtct 1621 tcactttttc agacaagtac aaggtttctc tctgaccact ccaacccaac tactgcaaca 1681 ctggtgacac cggaagacgc tacagtcccc attgccgggg ttgaagctac agcagacata 1741 gaaaaccatc ccaatgacaa ggtaaaaata atcgttacat taatgccatc atttatcatt 1801 ttccctgaga attcagtatc aaagcatcct tacaagggta atannnnnnn nnnnnnnnnn 1861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1921 nnnnnnnnnn nnnnnnnnnn nnnattaaac tcaggacctt tggaagagca gtcagtgctc 1981 ttaatttctg agccatctct ccagcccagg aagaatgttt aatggtagct ttgtagagat 2041 aaataagaat accatgtcat ttgttttgtt taaggctgaa aaaccttcag cacttaattc 2101 agaagaggaa actcatgaac agtcaacaga gcaggacaaa acctacagct tcgaggtgga 2161 cctgaaggat gaggaggatg gagatgggga tttaagtgta gatccaacgg aaggaacact 2221 aacactggat ctacaagaag gtacaagtga gcctcaacag aaaagtctcc cggagaacgg 2281 cgatttcccc gcgaccgtgt ccacttccta tgtggatcct aaccaacgcg caaacatcac 2341 aaagggaaag gagagtcagg agcaacctgt aagtgactca caccagcaac cgaatgaaag 2401 cagcaagcaa acccaagact taaaggctga agaaagccag acacaagatc cagacattcc 2461 caatgaagaa gaggaagaag aagaggaaga agaagaggaa gaagaggaag agccggaaga 2521 cattggtgcc cccagtgata accaagagga gggaaaagaa cctctggagg agcagcctac 2581 cagcaagtgg gaaggaaaca gagagcaatc tgatgacacc ttagaagagt ccagtcagcc 2641 cactcagata agcaagacag agaagcatca atctgagcaa ggaaaccaag ggcaggagag 2701 tgactctgag gcagaaggag aggacaaggc ttcaggcagc aaggaacaca ttccacatac 2761 agagcagcag gaccaagaag ggaaagctgg ccttgaagct attggcaacc agaaggacac 2821 tgatgagaag gccgtttcca cagaacctac cgatgctgcc gtggtgccta ggagtcacgg 2881 aggagctggt gataacgggg gcggggatga ctctaagcat ggtgcaggcg atgactactt 2941 catccccagc caggaattcc tagaggccga aaggatgcat tccctctcct attacctcaa 3001 atatggcggc ggcgaggaga caacgactgg cgagagtgag aaccagaggg aggctgcaga 3061 caaccaagag gtgagcgaga atagtcttag ctgtgctacc cacatccccg caccctggtg 3121 tgcgtgttta tagcaggact tactaaaata cagggcaggg tgagcatcct catctgacgt 3181 gactgagaac aaaagcattg tgattggttt tttttttaaa tttggagatt gcatgtacat 3241 aacgagatat ctggaaaata gagtccaann nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3361 nnnnnnnntg tagtgttagg cacaacttct gcagaggtat gcacggctcc atggaggtat 3421 gcacagaaca cagtaagaga gaaaacaaat tactgctctc ttgagaacac tgaaattctg 3481 ctcttgctct tttcaaaggc caagaaagct gagagctcac caaatgctga accttcagat 3541 gagggcaact caagggagca cagtgctggt gagtggacac tgtgtgagct gcagctggtc 3601 caggagggat ggagtctgcc atnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3721 nntatacaca attactctgt gtctctgtcc tcttaccaat ctttcctgtt aggttcttgc 3781 acgaacttcc aatgtaaaag gggacacatt tgcaaaaccg atccacaagg gaaacctcac 3841 tgtgtttgcc aagatccaga gacttgtccc cctgcaaaaa tcctagatca ggtaagtatt 3901 ctgaaatatg gtccccgaga tacaccaaat ctctagtttc tcgagtannn nnnnnnnnnn 3961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4021 nnnnnnnnnn nnnnnnnnnn nnnnnnngag aaattttgaa ttccttctat cattgggaca 4081 ttcacaatta cagttctatg gagatctatc aggagctaag ttatcaccat tagtttaact 4141 tagtagattt tttttttatg tgtgccaaat tggagactcg ctatttttac agactctgcc 4201 agagcacatc tttggcacag cacatttacc aggtgttctg tgagttccag gtaagcattc 4261 tccagtgagt atctggttcc atcaccgctc cttgctttcc ttatctaggc ttgtggcact 4321 gacaaccaaa cctacgccag ctcctgtcac ctgtttgcta ccaagtgcag gctggagggg 4381 accaaaaagg gacaccaact gcagctggat tacttcggag cttgcaaatg tgagacactg 4441 accactgttg ccatccatca ctcgtggnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4501 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4561 nnnnnnncag tggtcctcag tcctttgcag catgttaaaa ttatgtagag atctcttaaa 4621 acatcctgat acccaggcac aaaaaatacc caacaacttg gagcatgcaa ggagcttcct 4681 gtgacttgtt atttgaagta tggtcacatg ttttctgctt accacagcta ttcctgcttg 4741 tacggacttt gaagtggctc agtttcccct gcggatgaga gactggctca aaaacatcct 4801 catgcagctt tatgaaccaa atcccaaaca tggcggctat ctcaatgaaa agcaaagaag 4861 caaagtaagc tagctgggtc tgctgcccaa gtgcgtctcc tcaggacctg ggtggggaag 4921 ggcgtggtag gagcactgct tgggagagaa agccttctct gcttttctgc gtatggttag 4981 cctacccacg ttaacattgt gcannnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5101 nnnaaccagg cttcatgccc tgggcaggtt tccctctgtc tgttcccttt caagtaagag 5161 tgacacgtga cagtcacctg gtagctgacc aacttttccc ttcttaatct caggtcaaaa 5221 aaatttacct ggatgagaag agactcttgg ctggagacca tcccattgaa cttctcttga 5281 gggactttaa gaaaaactac cacatgtatg tgtatcctgt gcactggcag tttaatgaac 5341 tggaccagca tcctgcagac aggtagaaac cctttacatt ttctggtgta atgatatctc 5401 tgtgaaacgg aattgagacc cagttgggaa catgtccagc ttcattttcg aatactaaat 5461 ataaaccatc gtgttaggaa tctaattaaa aaatcactta gaaaataatt ggacgtggta 5521 acagcccagc tcccgaatcg cgatagtgag tttccttata aaatctgtgc ttccccacaa 5581 aaatggcttc agttctcaac tcttgaacta aatccccaag ggaatcaatc tatcgggcca 5641 acttgggcca agtgccactt cttgtacaat ccaggtaggc aggaagtgag aggcaggtct 5701 cacaagcaca actcttggtt gcacattcag agactgggat tgggcttccc agtgaagggg 5761 tgagcctcgg gcaccataac ctgctcttgc ctgcagcttt tcggttggcc cacacagtga 5821 ctttgtagaa gggaatctcc ttggtgatcg agacttaagc cttcaagtac aaaccaggca 5881 attcgctgac tgtcgccgtc ctcttgcagg atcttgacac actctgaact tgctcctctg 5941 cgagcttccc tggtgcccat ggaacactgc ataactcgct tctttgagga gtgtgacccc 6001 aacaaggata agcacatcac cttgaaggaa tggggccact gctttggaat taaagagggt 6061 aagttcatta acaaagaaca atgtcttcag atgaacactg tgtcctgtgg cctaacagca 6121 agatcctctg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtacatgag 6181 tgagtgtgtg catgtgnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 6241 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnagaa 6301 acagtttctc aagtccaaat tatgatgaga atcactatca caccaccttc ttagatggtt 6361 tcgcttatta atgactctaa ccttccttgg atttgtggct tcttgtatga ctttctaaaa 6421 ctttgtctgc ctatcatcaa tttatctatc taactattta tttatttatt tatttttgca 6481 gaggatatag atgaaaacct cctcttttga attaagattt gagagaatcg gaactttcca 6541 tccacctcac ctgctttaac cgcttcagaa atacgagcag ccatgacact atacattcat 6601 atgtagcaaa acatttgttt ggcatgtgag agaagacaat ggtagtaatt acttcttggt 6661 gatatatata tgagccaggc acttaatatt aacttaggaa atgaaacttt aaaattaagt 6721 agagtcaatg tctataaaag actgtcctgt ctggggacag ttagccacca tggcaatgtc 6781 actctgtgca tctgcgttta taattgataa ttataaacta ttaaaaaaac aatgttcata 6841 ttgtccataa taccttatgc atgctgagga agtgagatac tgctcttttg agataaatat 6901 gcctcctttt cagtgtcttg atgtcctaat aaaaaatcta taaaacccca aatgtctccc 6961 caagattatt tccggttttt aaacagtcaa atgtaaaaga ccagcccagg gcttacatta 7021 gagcataaaa cagaactgtg cttgcttact agtgaaaata aaaagtgctt ttaaaggaaa 7081 gatagaggtg ttttctgtgg caaatgcatt gttacaaatt gtgaat //