LOCUS PMU55002 4326 bp RNA linear VRL 01-JUN-2017 DEFINITION Panicum mosaic virus (PMV) Kansas strain infectious clone, complete sequence. ACCESSION U55002 VERSION U55002.1 KEYWORDS . SOURCE Panicum mosaic virus ORGANISM Panicum mosaic virus Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae; Panicovirus; Panicovirus panici. REFERENCE 1 (bases 1 to 4326) AUTHORS Turina,M., Maruoka,M., Monis,J., Jackson,A.O. and Scholthof,K.B. TITLE Nucleotide sequence and infectivity of a full-length cDNA clone of panicum mosaic virus JOURNAL Virology 241 (1), 141-155 (1998) PUBMED 9454725 REFERENCE 2 (bases 1 to 4326) AUTHORS Scholthof,K.-B.G. and Turina,M. TITLE Direct Submission JOURNAL Submitted (12-APR-1996) K.-B. G. Scholthof, Plant Pathology, Texas A&M University, 120 Peterson Building, College Station, TX 77843-2132, USA FEATURES Location/Qualifiers source 1..4326 /organism="Panicum mosaic virus" /mol_type="genomic RNA" /strain="Kansas" /db_xref="taxon:40279" /note="PMV is a member of the provisional group 'Panicovirus' within the family Tombusviridae; Virus is maintained by mechanical transmission to Pennisetum glaucum" CDS 29..3007 /note="112 kDa protein; readthrough of amber stop codon" /codon_start=1 /transl_except=(pos:1304..1306,aa:OTHER) /product="RNA-dependent RNA polymerase" /protein_id="AAC97551.1" /translation="MESLIQHILSATSSLSMPSVDSDKLQLLLTRFPQATLSWLSGID GLSVHQFKVVATHVIKESYSHLSPSVAVLLAKPSDYYKLVVHGLTQKQWNEFDDKVTD APRTAISWLYNQILVVGQPWMKSLNEGLKEYLPGWLHTCLRMLANLWFGAERVLHGIS HAVSDITTYQPWMSCRRCVAHSPKESLLGEATTTSNPRESSWFSWLLCGGVVAATVYG FYKWVTITETIDRQDLAKQRPTHMQKCYEEVKARLEEESKGFIHDRMEDELTKIVLEP AEIDNDGKVLKSEVAQYLVKNHGRFVRSLVTMAKNEFAGVPKPTEANQLAVWRYLYRV CDKKGVNPSDTQKSISAALPFVFLPSAYDQDQAITMNCDDTKKVLERYADTFRHTTPL QKLVTNPLVGANWTAWARSIFISDPETGLRFAKXGCIEKWQGVQCKRTRVRHPRLRCH FKDRDPKVRSIYRIAGLGDQYEFGLHNNSAANLERGLAERVYMVKNYKTDFVASLDPA FCPAPEPVRGIFKRLDKYKKEIVRRVGRKSPITDEMFLSYYDGPQLTTYSKAVISLSE RPVAVQDSYLKTFIKAEKLNLTLKTDPCPRVIQPRHPRYNVELGKYLKHIEHPIYKAI DRIWGGKTIFKGMNVEAMGAEIHKKMCKYSNPCAIGFDASRFDQHVSVEALRFEHSIY KSIHGYPELLSLLLKWQIHNQGTAHTNDGFFKYLVDGKRMSGDMNTSLGNCILASLIV KDLVDSLGVDAQLVNNGDDNVLICSVDDEEVVVKALYDHWMKYGFEVVAEQPVYITEQ IEFCQMKPVFDGTQYVLVRNPTVTMSKDACSITPFYTANSARKWCRAVGEAGLSLTGG MPIKQAYYQCMIRNGINKGNIHKSKEFRYGLSYVLHHGKSDRKARPISAATRYSFYLA FGYTPDEQTALEGYYDSLELEWTESRLGIPARTPECLLLRLLPKIPLQPKSPTKPVQR TASKPDLPDSQWQQALAAPL" CDS 29..1306 /note="48 kDa protein" /codon_start=1 /product="replicase-associated protein" /protein_id="AAC97552.1" /translation="MESLIQHILSATSSLSMPSVDSDKLQLLLTRFPQATLSWLSGID GLSVHQFKVVATHVIKESYSHLSPSVAVLLAKPSDYYKLVVHGLTQKQWNEFDDKVTD APRTAISWLYNQILVVGQPWMKSLNEGLKEYLPGWLHTCLRMLANLWFGAERVLHGIS HAVSDITTYQPWMSCRRCVAHSPKESLLGEATTTSNPRESSWFSWLLCGGVVAATVYG FYKWVTITETIDRQDLAKQRPTHMQKCYEEVKARLEEESKGFIHDRMEDELTKIVLEP AEIDNDGKVLKSEVAQYLVKNHGRFVRSLVTMAKNEFAGVPKPTEANQLAVWRYLYRV CDKKGVNPSDTQKSISAALPFVFLPSAYDQDQAITMNCDDTKKVLERYADTFRHTTPL QKLVTNPLVGANWTAWARSIFISDPETGLRFAK" CDS 2875..3096 /note="8 kDa protein; 8 kDa putative ORF" /codon_start=1 /product="movement protein 1" /protein_id="AAC97553.1" /translation="MSTVETPAQDTLATKEPNKTGAKDRQQARSARLSVAAGAGRTAL SQRDAQEDRFSLGIVQTADKIENTFNFNF" CDS <3096..3275 /note="6.6 kDa protein; noncanonical start codon" /codon_start=1 /product="movement protein 2" /protein_id="AAC97554.2" /translation="VATGKCYCPEDPRVGPLLVLCLLLLLILFSRSWNVAPVVVPSYH TVYHHEKYQNIEIQK" CDS 3272..4000 /note="26 kDa protein" /codon_start=1 /product="capsid protein" /protein_id="AAC97555.1" /translation="MNRNGATPTRGRGKRAIPNPPRRRARGKSVERGSTPLQYVTTLG PSRPRMGQGQGWQKLSHEEIILQVNSSTAADTIQTIPIIPRLSVPAGDKPIYSGSAPH LRTIGSAFAIHRWRALSFEWIPSCPTTTPGNLVLRFYPNYSTETPKTLTDLMDSESLV LVPSLSGKTYRPKIETRGNPPELRNIDATAFSALSDEDKGDYSVGRLVVGSSKQAVVI QLGLLRMRYSAEMRGATSISGVSA" CDS 3282..3680 /note="15 kDa protein" /codon_start=1 /product="accessory movement protein" /protein_id="AAC97556.1" /translation="MELPLPEDVASVLYLTPLAAVREVNLWNGAPPPYSMLQLWARVD HAWAKDRVGRSYPTRKSYFKSTRLLPRTLYRQYQSYRDCQCLQETSPFTREVHHTCVQ LDPLSPSTDGEHSPSSGSPAVLRQHREIWF" BASE COUNT 1216 a 1113 c 1051 g 946 t ORIGIN 1 gggtattggc tgcaacccat acctgaagat ggagtcgctc atacagcaca ttctctctgc 61 tacatcttcg ctttccatgc catcagtgga cagtgacaaa ctgcaactac tacttacacg 121 cttcccacag gctacactct catggctgag tggaatagac ggcctaagcg tgcatcaatt 181 caaggtagtg gctacccacg taatcaagga aagctattcc catctctcac cttccgttgc 241 agtgttgctg gcgaagccca gtgactacta caagctggtg gtccacggac tcacccaaaa 301 gcaatggaac gagtttgacg ataaagtcac agacgctccg cggaccgcta tatcatggtt 361 atacaaccaa attttggtag ttggacagcc atggatgaag agtctgaacg agggattaaa 421 ggaatacctg ccaggttggc ttcacacctg tctaagaatg ctagccaatc tgtggttcgg 481 ggctgaaaga gttctacatg gcatttcaca cgccgtcagt gacatcacta catatcaacc 541 atggatgtca tgtcggagat gtgtcgcaca tagccccaaa gagagcttgc taggcgaggc 601 aaccaccacc tccaaccccc gagagtcttc ttggttttca tggttgttgt gcggaggagt 661 ggtagcggca acggtatatg gattctacaa atgggttacc atcacggaga ccattgaccg 721 ccaggaccta gcaaaacaga ggcccactca tatgcagaag tgctatgaag aagtgaaggc 781 ccgactagag gaggaaagca aagggttcat tcacgaccgg atggaagacg aactcaccaa 841 aatcgtgcta gagccagctg aaattgacaa tgacggcaaa gtgcttaaat ctgaggtggc 901 acaatacctg gttaaaaatc atggccgttt cgtccgctcc ctagtaacaa tggcaaagaa 961 cgaattcgct ggggttccaa aacccacaga ggctaaccag ttggctgtct ggagatacct 1021 ctacagggtg tgtgataaga aaggagttaa cccctcggac acacagaaaa gcatatccgc 1081 tgccttgcca tttgtattcc tgcctagcgc atacgaccag gatcaggcca tcactatgaa 1141 ctgtgatgac accaagaaag tgcttgagcg ctatgcagac acatttcgac acaccacccc 1201 actgcaaaaa ctagtgacca atccattagt tggggccaat tggactgctt gggcaagatc 1261 catttttatc tcggacccgg aaacgggtct gaggtttgcc aagtaggggt gtatcgaaaa 1321 gtggcagggg gtccagtgca agcgcactcg ggtccgacac ccccgtctca gatgccactt 1381 taaagatagg gaccccaagg tacgcagtat ttaccgtatc gctggactgg gcgatcagta 1441 tgagtttggg cttcacaaca acagtgctgc gaaccttgaa aggggcttag ccgaaagggt 1501 gtacatggtc aagaattaca agacagactt tgtagcctca cttgaccctg cgttttgccc 1561 tgccccagaa ccagtcagag gcatattcaa acgcctagac aaatacaaga aggagattgt 1621 gagacgagtc ggtaggaaga gtccaatcac tgacgagatg ttcctttctt actatgatgg 1681 tccccagttg accacttata gcaaggctgt gatttccttg tccgaacgcc ctgtggctgt 1741 ccaagactca tatcttaaaa ccttcatcaa ggcggagaaa ttaaacctca cactcaagac 1801 agacccctgt cctagggtca tacaaccacg tcaccccaga tacaatgtcg agttgggtaa 1861 gtatctcaag cacatagaac acccaatcta taaagccata gacagaatat ggggggggaa 1921 gacaatattt aaaggcatga atgtagaggc tatgggcgcc gaaatccaca agaaaatgtg 1981 caaatactcc aacccttgcg caataggatt tgacgcctcc cgtttcgatc agcacgtatc 2041 tgtagaagcg ctaagatttg agcactccat ctacaaatct attcacggat accctgaact 2101 gcttagtcta ctactcaaat ggcaaatcca caaccagggc actgcacaca ccaatgatgg 2161 atttttcaag tacttagtag acggaaagag gatgtctggt gacatgaaca ccagtctggg 2221 aaactgcatt ttggcatcgc taatagtgaa agacttggtt gacagtctag gcgttgatgc 2281 tcaactcgtc aacaatggag acgacaatgt cctaatctgc tcggtggatg atgaggaagt 2341 ggtagtcaag gcattgtacg accattggat gaagtatggg tttgaggtcg tagcagagca 2401 accagtctat atcacagagc aaatagaatt ctgccaaatg aagccagttt ttgacggaac 2461 ccagtatgtc ctcgtcagaa acccaactgt taccatgagt aaagatgcgt gcagcattac 2521 tcctttttac acagcgaaca gcgctcgcaa atggtgtaga gcagttggag aagcaggatt 2581 aagtctgaca ggtggtatgc ccatcaaaca agcgtattac cagtgcatga ttcgaaacgg 2641 cattaacaag ggtaacatcc acaagtcaaa ggagtttagg tacgggttat cttacgtgct 2701 acaccacggc aaatccgacc ggaaggcccg ccccatttca gcggcgacca gatattcatt 2761 ctaccttgca tttggctaca ctcctgacga gcaaacagcc ttggaaggtt attatgactc 2821 ccttgaattg gagtggaccg aatccaggtt gggtattcct gcaagaacgc ccgaatgtct 2881 actgttgaga ctcctgccca agataccctt gcaaccaaag agcccaacaa aaccggtgca 2941 aaggaccgcc agcaagccag atctgccaga ctctcagtgg cagcaggcgc tggccgcacc 3001 gctttaagcc aacgagacgc acaagaagac aggttcagcc taggaattgt tcaaactgct 3061 gacaagattg aaaatacttt caacttcaat ttctagtggc gaccggcaag tgctattgtc 3121 ccgaggaccc aagagttggg cccctcctag tactctgcct acttctatta ctgatcctgt 3181 tttcacggtc gtggaacgta gctccagtgg tggttccctc ataccacaca gtgtaccatc 3241 acgagaaata ccaaaacatt gagatccaga aatgaatcgc aatggagcta cccctaccag 3301 aggacgtggc aagcgtgcta tacctaaccc ccctcgccgc cgtgcgagag gtaaatctgt 3361 ggaacggggc tccacccccc tacagtatgt tacaactctg ggcccgagta gaccacgcat 3421 gggccaagga cagggttggc agaagttatc ccacgaggaa atcatacttc aagtcaactc 3481 gtctactgcc gcggacacta tacagacaat accaatcata ccgcgattgt cagtgcctgc 3541 aggagacaag cccatttact cgggaagtgc accacacctg cgtacaattg gatccgcttt 3601 cgccatccac agatggcgag cactctcctt cgagtggatc cccagctgtc ctacgacaac 3661 accgggaaat ctggttttga ggttctatcc gaactacagc acggaaacac ctaagaccct 3721 cacagacctg atggacagcg aatccctcgt gttagtccct tccctctccg ggaaaactta 3781 ccgccctaag atcgaaacac gaggaaaccc accggaattg cgcaacatag atgccaccgc 3841 tttctccgct ctcagcgacg aagataaggg tgactactcg gtgggaaggc tggttgttgg 3901 ctccagcaaa caagctgtcg tgatacagct cggactcctc cgcatgagat actcagctga 3961 aatgcgggga gcaacctcca tcagtggggt tagcgcataa acctgcccaa ggttatcaca 4021 ggctaggacc ggcctgataa aggtccgact tgatgtgcag cttcttaggt gcatctcgta 4081 tagaagcgct ctggacatga cacctttgag acagaccgta cagcagtcac acgggacgcc 4141 acaccacctt tgcagaggtg cccttgggaa accaatggtg tggggtgaca ctgattagtc 4201 gttaacggtg tactaatcca gagtagttca gtgcagggga aacccgggcc gtaagcacgt 4261 ggaactatat aacttaatct cgctgagaag attggggggg attcatgaaa tcccctcacc 4321 aggccc //