LOCUS PAU27829 4617 bp DNA linear BCT 02-MAR-1996 DEFINITION Pseudomonas aeruginosa alginate-C5-mannuronan-epimerase (algG), AlgX (algX) and alginate lyase (algL) genes, complete cds. ACCESSION U27829 L09724 U06720 VERSION U27829.1 KEYWORDS algL gene; alginate lyase. SOURCE Pseudomonas aeruginosa ORGANISM Pseudomonas aeruginosa Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 1725) AUTHORS Franklin,M.J., Chitnis,C.E., Gacesa,P., Sonesson,A., White,D.C. and Ohman,D.E. TITLE Pseudomonas aeruginosa AlgG is a polymer level alginate C5-mannuronan epimerase JOURNAL J. Bacteriol. 176 (7), 1821-1830 (1994) PUBMED 8144447 REFERENCE 2 (bases 1679 to 3244) AUTHORS Monday,S.R. and Schiller,N.L. TITLE Sequence and expression of Alg X JOURNAL Unpublished REFERENCE 3 (bases 2686 to 4617) AUTHORS Schiller,N.L., Monday,S.R., Boyd,C.M., Keen,N.T. and Ohman,D.E. TITLE Characterization of the Pseudomonas aeruginosa alginate lyase gene (algL): cloning, sequencing, and expression in Escherichia coli JOURNAL J. Bacteriol. 175 (15), 4780-4789 (1993) PUBMED 8335634 REFERENCE 4 (bases 1 to 4617) AUTHORS Monday,S.R. and Schiller,N.L. TITLE Alginate synthesis in Pseudomonas aeruginosa: the role of AlgL (alginate lyase) and AlgX JOURNAL J. Bacteriol. 178 (3), 625-632 (1996) PUBMED 8550492 REFERENCE 5 (bases 1 to 1725; 2686 to 4617) AUTHORS Ohman,D.E. TITLE Direct Submission JOURNAL Submitted (15-FEB-1994) Dennis E. Ohman, Dept. of Microbiology & Immunology, University of Tennessee, 858 Madison Ave., Memphis, TN 38163, USA REFERENCE 6 (bases 1679 to 3244) AUTHORS Monday,S.R. TITLE Direct Submission JOURNAL Submitted (26-MAY-1995) Steven R. Monday, Biomedical Sciences, University of California, Riverside, CA 92521, USA COMMENT On or before Jun 28, 1995 this sequence version replaced gi:460604, gi:150997. FEATURES Location/Qualifiers source 1..4617 /organism="Pseudomonas aeruginosa" /mol_type="genomic DNA" /strain="FRD1" /db_xref="taxon:287" /map="34 min." /clone="pCC65" gene 76..1707 /gene="algG" CDS 76..1707 /gene="algG" /codon_start=1 /transl_table=11 /product="alginate-C5-mannuronan-epimerase" /protein_id="AAA91125.1" /translation="MPDISLSIPRRRLPRLRPLAAAVLGAVLLHGQAWAAQPVEKPQP VPAQAGNEPGLTQGLKETGNYTVTTAPAEPLHLDPPKLPDLSGYTAAAVEAKIVRKPG GRASVQRMVQQQPLKEFTGGSNRLAEWVKRQRQMPQAIFIEGGYVNLAQLAGKLPASA LEQVEPGVFVARLPIVVSQGATLDIDKQVKELRLSQERGAFLVNDGMLFVRDSKVTGW SESKKEPAWFKTPNEFRPFLISWGGAEVYLSNSTFTSFGYNASKAYGISISQYSPGMD KQMKRPRPKGWVIDSTIVDSWYGFYCYEADDLVVKGNTYRDNIVYGIDPHDRSHRLII ADNTVHGTRKKHGIIVSREVNDSFIFNNRSYENKLSGIVLDRNSEGNLVAYNEVYRNH SDGITLYESGDNLLWGNQVLANRRHGIRVRNSVNIRLYENLAAGNQLIGVYGHIKDLT NTDRNIALDPFDTKVSLIVVGGKLAGNGSGPLSVDSPLSLELYRVAMLAPTKSSGISL PGVLGEKQDQILDLLVRQDKAVLIDPVESQAELQD" gene 1720..3144 /gene="algX" CDS 1720..3144 /gene="algX" /codon_start=1 /transl_table=11 /product="AlgX" /protein_id="AAA91126.1" /translation="MKTRTSRLFRLSALAAGLCLAQAALAADPGAAPSYQALPAGNLC PAAADDSRYNTKYLGFFTHLVQAQDDWLFRTTYDLRTDFGTSAEGWRELRALRDELKR KGIELVVVYQPTRGLVNREKLSPAEKAGFDYELAKKNYLATIARFRQAGIWTPDFSPL FDEKEEHAYYFKGDHHWTPHGARRSAKIVAETLKQVPGFEEIPKKQFESKRVGLLSKL GTFHKAAAQLCGNSYATQYVDRFETEPVGASDSGDLFGDGGNPQIALVGTSNSGPAYN FAGFLEEFSGADILNNAVSGGGFDSSLLAYMTSEEFHKNPPKILIWEFATHYDMAQKS FYRQAMPLVDNGCSGRKTVLSRKVKLRQGRNEVLLNSAALPIRSGSYVADVTYSDPSV HELKNTIWYMNGRREQLKIEQSKAVDTGGRYVFQLRNDSDWADQQFLSLEIEAPEDMP QGLEVQASICQAAPAKASQSVAGR" gene 3148..4251 /gene="algL" CDS 3148..4251 /gene="algL" /codon_start=1 /transl_table=11 /product="alginate lyase" /protein_id="AAA91127.1" /translation="MKTSHLIRIALPGALAAALLASQVSQAADLVPPPGYYAAVGERK GSAGSCPAVPPPYTGSLVFTSKYEGSDSARATLNVKAEKTFRSQIKDITDMERGATKL VTQYMRSGRDGDLACALNWMSAWARAGALQSDDFNHTGKSMRKWALGSLSGAYMRLKF SSSRPLAAHAEQSREIEDWFARLGTQVVRDWSGLPLKKINNHSYWAAWSVMSTAVVTN RRDLFDWAVSEFKVAANQVDEQGFLPNELKRRQRALAYHNYALPPLAMIAAFAQVNGV DLRQENHGALQRLAERVMKGVDDEETFEEKTGEDQDMTDLKVDNKYAWLEPYCALYRC EPKMLEAKKDREPFNSFRLGGEVTRVFSREGGS" BASE COUNT 896 a 1649 c 1430 g 642 t ORIGIN 1 gggcaccgac tcgaccatgc accgcgcctt cgtcgacttc atctggcgct tctgagcccc 61 gcgaggaaac cggacatgcc cgacatttcc ctttcgatcc cccgccgccg gctcccgcgc 121 ctgcgcccgc tggccgcggc agtgctcggc gcggtgctgc tgcacggcca ggcgtgggcg 181 gcgcagccgg tggagaaacc gcagccggtc ccggcgcagg ccggcaacga gccgggcctg 241 acccagggcc tgaaggaaac cggcaactac acggtgacca ccgcgccggc cgaaccgttg 301 cacctggacc cgccgaaact gcccgacctc tccggctaca ccgccgccgc ggtggaagcc 361 aagatcgtgc gcaagccggg tggccgcgcc agcgtgcagc gcatggtcca gcagcagccg 421 ctgaaggagt tcaccggtgg cagcaaccgc ctcgccgaat gggtcaagcg ccagcgccag 481 atgccccagg cgatcttcat cgaaggcggc tacgtgaacc tcgcccagct cgccggcaag 541 cttcccgcca gcgcgctgga acaggtcgag ccgggggtgt tcgtcgcccg cctgccgatc 601 gtggtcagcc agggcgcgac cctcgacatc gacaagcagg tcaaggaact gcgcctgtcc 661 caggagcgcg gcgcgttcct ggtcaacgac ggcatgctgt tcgtccgcga cagcaaggtc 721 accggctgga gcgaatcgaa gaaggagccg gcctggttca agacgcccaa cgagttccgt 781 ccgttcctga tctcctgggg cggcgccgag gtgtacctga gcaacagcac cttcaccagc 841 ttcggctata acgcctccaa ggcctacggc atctccatct cgcagtacag cccgggcatg 901 gacaagcaga tgaagcgccc gcgccccaag ggctgggtga tcgactcgac catcgtcgac 961 agctggtacg gcttctattg ctacgaggcc gacgacctgg tggtgaaggg caacacctac 1021 cgcgacaaca tcgtctacgg catcgacccg cacgaccgtt cgcaccgcct gatcatcgcc 1081 gacaacaccg tccacgggac caggaagaag cacggcatca tcgtctcgcg ggaagtcaac 1141 gacagcttca tcttcaacaa ccgcagctac gagaacaagc tttccgggat cgtcctcgac 1201 cgtaacagcg agggcaacct ggtggcctac aacgaggtct atcgcaacca ttccgacggc 1261 atcaccctct acgagagcgg cgacaacctg ctctggggca accaggtcct ggccaaccgc 1321 cgccacggca tccgcgtgcg caacagcgtg aacatccgcc tctacgagaa cctcgcggcg 1381 ggcaaccagc tgatcggcgt gtacggccac atcaaggacc tcaccaacac cgaccgcaac 1441 atcgccctcg acccattcga caccaaggtc tcgctgatcg tggtcggcgg caagctcgcc 1501 ggcaacggct ccggcccgct ctcggtggat tcgccgctga gcctcgaact gtaccgggtg 1561 gcgatgctcg ccccgaccaa atcctccggc atcagcctgc ccggcgttct cggcgagaag 1621 caggaccaga tcctcgacct gctggtgcgc caggacaagg cggtgctgat cgaccccgtg 1681 gaaagccagg ccgaactcca ggactgagga cccagacgca tgaaaacccg cacttcccga 1741 ctgttccgcc tgagcgccct ggccgccggc ctctgcctgg cccaggcagc cctggccgcc 1801 gaccccggcg cggcgccgag ctaccaggcg ctgccggccg gcaacctgtg cccggccgcc 1861 gccgacgact cgcgctacaa caccaagtac ctgggcttct tcacccacct ggtgcaggcc 1921 caggacgact ggctgttccg caccacctac gacctgcgta ccgacttcgg caccagcgcc 1981 gaaggctggc gcgaactccg cgcactgcgc gacgaactca agcgcaaggg catcgagctg 2041 gtggtggtct accagccgac ccgcggcctg gtgaaccgcg agaagctcag cccagcggaa 2101 aaggccggct tcgactacga gctggcgaag aagaactacc tggcgaccat cgcccgcttc 2161 cgccaggccg gcatctggac cccggacttc tcgccgctgt tcgacgagaa ggaggagcac 2221 gcctactact tcaagggcga ccaccactgg actccccatg gcgcccggcg cagcgcgaag 2281 atcgtggccg agacgctgaa gcaggtgccc ggcttcgagg agatcccgaa gaagcagttc 2341 gaaagcaagc gcgtcggcct gctgtccaag ctcggcacct tccacaaggc cgccgcgcaa 2401 ctctgcggca acagctacgc cacccagtac gtcgaccgct tcgagaccga gccggtgggc 2461 gccagcgaca gcggcgatct gttcggcgac ggcggcaacc cgcagatcgc cctggtcggc 2521 acctccaaca gcggcccggc ctacaacttc gccggcttcc tggaggagtt cagcggcgcc 2581 gacatcctca acaacgcggt gtccggcggc ggcttcgaca gttcgctgct ggcgtacatg 2641 accagcgagg aattccacaa gaacccgccg aagatcctca tctgggaatt cgccacccac 2701 tacgacatgg cgcagaagag cttctaccgc caggccatgc cgctggtgga caacggctgc 2761 tccggccgga agaccgtact cagccgcaag gtcaagctgc gccagggccg caacgaggtg 2821 ctgctgaaca gcgccgcgct accgatccgt agcggcagct acgtcgccga cgtgacctac 2881 agcgaccctt cggtacacga gttgaagaac accatctggt acatgaacgg ccgccgcgag 2941 cagttgaaga tcgagcagtc gaaagccgtc gataccggcg gccgctacgt cttccaactg 3001 cgcaacgaca gcgactgggc cgaccagcag ttcctttccc tggaaatcga agcgccggag 3061 gacatgcccc agggcctgga ggtccaggcc agcatctgcc aggcggcgcc cgccaaggcc 3121 agccagtcgg tggccgggag gtaaacgatg aaaacgtccc acctgatccg tatcgccctg 3181 cccggtgccc tcgccgcggc attgctcgcc agccaggtca gccaggccgc cgacctggta 3241 cccccgcccg gctactacgc ggcggtcggc gagcgcaagg gcagcgccgg cagctgcccc 3301 gcggtgccgc cgccgtatac cggcagcctg gtcttcacca gcaaatacga aggctccgat 3361 tcggcgcggg cgaccctcaa cgtcaaggcg gagaagacct tccgctcgca gatcaaggac 3421 atcaccgaca tggagcgcgg cgctaccaag ctggtcaccc agtacatgcg cagcggccgc 3481 gacggcgacc tggcctgcgc actgaactgg atgagcgcct gggcccgcgc cggcgccctg 3541 cagagcgacg acttcaacca caccggcaag tccatgcgca aatgggcgct gggcagcctc 3601 tccggcgcct acatgcgcct gaagttctcc agctcgcggc cgctcgcggc ccacgccgag 3661 cagagccggg aaatcgagga ctggttcgcc cggctcggca cccaggtagt ccgcgactgg 3721 agcggcctgc cgctgaagaa gatcaacaac cattcctact gggcggcctg gtcggtgatg 3781 tccaccgcgg tggtgaccaa ccgccgcgac ctcttcgact gggcggtgag cgagttcaag 3841 gtcgccgcca accaggtcga cgagcagggc ttcctgccca acgaactcaa gcgccgccag 3901 cgcgccctcg cctaccacaa ctatgcgctg ccaccgctgg cgatgatcgc cgcgttcgcc 3961 caggtcaacg gcgtcgacct gcgccaggag aaccacggcg ccctgcagcg cctggccgag 4021 cgggtgatga agggagtcga cgacgaggaa accttcgagg agaagaccgg cgaggaccag 4081 gacatgaccg acctcaaggt cgacaacaag tacgcctggc tggagcccta ctgcgccctc 4141 taccgctgcg agccgaagat gctcgaggcg aagaaggacc gcgagccgtt caacagtttc 4201 cgcctcggcg gcgaagtgac gcgggtgttc agccgcgaag ggggaagttg agggcgtggc 4261 gggaagcggg cgcacaggcc gggggccacg cgcccctcta ccccgctcgc cgaccaggcg 4321 ccacaccccg acccatgcgc gacagacgcg ggcgggcgca acaccttagg caacaccacg 4381 gggaggaaaa cggcgggtcg tcccgccttt cctcgagcgc tccagggcgc ggaaaggcag 4441 ggccgacctg aatggttgac gctctagaga gagagacggc atggtctttt cttcaaacgt 4501 gttcctgttc ctgttcctgc cggtctttct cggcctgtac tacctgagcg gcgaacgtta 4561 ccggaacctg ctgctgctga tcgccagcta cgtgttctag gggggctcgc agaattc //