LOCUS EHU25347 5805 bp DNA linear BCT 15-NOV-2023 DEFINITION Pantoea agglomerans PdxA (pdxA) gene, partial cds; tyrosine phenol-lyase (tutA) and tyrosine permease (tutB) genes, complete cds; and unknown gene. ACCESSION U25347 VERSION U25347.1 KEYWORDS . SOURCE Pantoea agglomerans ORGANISM Pantoea agglomerans Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea; Pantoea agglomerans group. REFERENCE 1 (bases 1 to 5805) AUTHORS Foor,F. TITLE Nucleotide sequence and analysis of the tyrosine utilization genes of Erwinia herbicola JOURNAL Unpublished REFERENCE 2 (bases 1 to 5805) AUTHORS Yu,J.J., Hederstedt,L. and Piggot,P.J. TITLE Direct Submission JOURNAL Submitted (21-APR-1995) Jun Yu, Department of Microbiology & Immunology, Temple University, 3400 N. Broad Street, Philadelphia, PA 19140, USA FEATURES Location/Qualifiers source 1..5805 /organism="Pantoea agglomerans" /mol_type="genomic DNA" /isolate="ATCC 21434" /db_xref="taxon:549" gene <1..319 /gene="pdxA" CDS <1..319 /gene="pdxA" /function="involved in the formation of pyridoxal phosphate; is the coenzyme of tyrosine phenol-lyase" /inference="non-experimental evidence, no additional details recorded" /note="similar to E. coli PdxA: Swiss-Prot Accession Number P19624" /codon_start=2 /transl_table=11 /product="PdxA" /protein_id="AAA66389.1" /translation="IRILTPAVEAMKAQGMDVYGPCPPDTVFMQCNEDMYDIVVAMYH DQGHIPLKLLGFYDGVNITAGLPFLRTSADHGTAFNIAWTGKANPESMAISIDMAMKI TRE" protein_bind join(619..624,631..636) /bound_moiety="TyrR" protein_bind join(672..676,683..697) /bound_moiety="Crp" protein_bind join(696..700,707..711) /bound_moiety="Crp" protein_bind join(732..737,744..749) /bound_moiety="TyrR" protein_bind join(746..750,755..759) /bound_moiety="Fnr" protein_bind join(847..852,859..864) /bound_moiety="TyrR" regulatory 904..912 /regulatory_class="minus_35_signal" regulatory 929..934 /regulatory_class="minus_10_signal" gene 941..2450 /gene="tutA" regulatory 1050..1053 /regulatory_class="ribosome_binding_site" /gene="tutA" CDS 1062..2432 /gene="tutA" /EC_number="4.1.99.2" /function="converts L-tyrosine to phenol, pyruvate, and ammonia in a reaction catalyzed by pyridoxal phosphate as a coenzyme" /experiment="experimental evidence, no additional details recorded" /note="similar to E. coli tryptophan indole lyase: Swiss-Prot Accession Number P00913; tyrosine phenol-lyase is not expressed anaerobically" /codon_start=1 /transl_table=11 /product="tyrosine phenol-lyase" /protein_id="AAA66390.1" /translation="MNYPAEPFRIKSVETVSMISRDERVKKMQEAGYNTFLLNSKDIY IDLLTDSGTNAMSDKQWAGMMIGDEAYAGSENFYHLEKTVKELFGFKHIVPTHQGRGA ENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDL NKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRC VENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDEEMFS AAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREAGV PIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKET GENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRGLTFVYEPKQLRFFT ARFDFI" gene 2576..3838 /gene="tutB" regulatory 2576..2579 /regulatory_class="ribosome_binding_site" /gene="tutB" CDS 2588..3838 /gene="tutB" /inference="non-experimental evidence, no additional details recorded" /note="similar to E. coli permeases: TyrP, Swiss-Prot Accession Number P18199; TnaB, Swiss-Prot Accession Number P23173; and Mtr, Swiss-Prot Accession Number P22306" /codon_start=1 /transl_table=11 /product="tyrosine permease" /protein_id="AAA66391.1" /translation="MVIKKTTPGLMSGTMLIIATVIGGGMFSLPIAMAGIWFPGASII LTLIAIMMLLTGLMLVEVNLHYGGGASFNTFTQDLLGHKWNVVVGIAFGFVLYILTYA YISGSSAVISQTVEKYSGFYLPARLSVIIVSVLVGGIAWYSSLLVGRITTVLIIGKFV AFFATFSGLIWHVEGAKLIDSAAWALPDTQYLPYILMTLPFCIISYGFHGNVPSLVKL YGTQGVKNITRSIFIGTAFALLLYIFWLVVTMGNISRADFSPIIAKGGNIDVFVEAIG GLFTSTSMDLILTFFGNFAVASSLLAATLGLFDYIADLFHFSDDRSGRFKTALVTYLP PAVVCFILPGGFVYAIGYAGLAFTIWSVILPPFLVKAARKRFPTAVYTAPCNNMILNL VIVVGGFVYLTVVLDVFRLLPSFS" protein_bind join(4505..4510,4607..4612) /bound_moiety="TyrR" protein_bind join(4581..4585,4590..4594) /bound_moiety="Fnr" protein_bind join(4983..4988,4995..5000) /bound_moiety="TyrR" CDS 5121..>5805 /experiment="experimental evidence, no additional details recorded" /note="ORF1; lacZ fusion indicates it is transcribed in E. coli." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="AAA66392.1" /translation="MSRKDTANHAGNNQIITLINSEITMPNKLLSANATVPQWDRHNL VPRIVHLGFGAFHRAHQAVYADVLAAEHSSDWGYIEVNLIGGEQQIADLKCQDFLYTV AEMSASAWSGRVVGVVRQALHAQVDGTEAVLEALCQPQVAIVSLTITEKGYCHAPATG ELMRDHPLIVADLAQPHQPHSAPGIIVEALARRRAAGLAAFSVMSCDNIPENGRVIAG VVCAYARQCD" BASE COUNT 1430 a 1330 c 1381 g 1664 t ORIGIN 1 gatccgtatt ctgacgcccg ctgtcgaagc gatgaaagcg cagggcatgg atgtgtacgg 61 cccctgtcca ccggacaccg ttttcatgca gtgtaacgaa gacatgtacg acattgttgt 121 cgccatgtat cacgatcagg ggcatattcc gcttaagctg cttggctttt acgacggggt 181 gaacatcacg gcaggattgc ctttcctgcg tacttcagcc gatcacggta cggcatttaa 241 catcgcctgg acaggtaagg ctaatccgga gagtatggcg atatcaattg atatggccat 301 gaagattacc cgggagtaat aatttatcga aagctaatgc tttctggtca ctcaggcgat 361 ggcaagacat cgccttttct ccaccgggct gaagcgtcat cgctgtccac aacccatcca 421 cctcaacacg ttacctccac ttcgcttgca aatgactacg agcagatagt catgctctat 481 tacataagtt ctctttattt aagttttgat cggcagcgac ctgcctcagt gggataatat 541 gaatggattg tctcagtgct gtagcgactt tcttatttca cgtcattaac attcgccgct 601 cagttaataa ctcggtgatg tacattgaag tttacggatt ttaagcaacc gctgtgatta 661 ttcatttttt atgtgatcgc tgcctcatat tatctggtta aaaatgtcac atttattacc 721 aataaagaaa atggaaagat aagttttcat tgttatcaac cttaaccgac ttttctgttt 781 ctgtatgacc gacggccgtt acgctaacgc tatgaatatt cagcatacat ggccgatctt 841 ttttgatgtt taatcatttt tacgttttat acattgtcag aaaggcgcgc atagtgacgc 901 ggctattttc atcgcatgat aaatcccgca tgatggtgtc gtattatttc cacctcaatt 961 ctgaggttat tgttatatct tcctgtgcat ttcatctatg caccagactt attcgacgcg 1021 catttttctg cgtatgaaaa tggataactg gagaaataaa catgaactat cctgccgagc 1081 ctttccgcat taaaagtgtt gaaaccgtat caatgatctc acgcgatgag cgtgttaaaa 1141 aaatgcaaga agcgggctat aacacgtttt tactgaattc aaaggatatc tacatcgatc 1201 tgctgacaga cagcggtaca aatgccatga gtgacaagca gtgggcaggg atgatgattg 1261 gtgatgaagc ctacgcaggc agtgaaaact tctaccatct cgaaaaaacg gtgaaagagt 1321 tgtttggttt caaacacatc gttccaaccc accagggacg cggggcggaa aacctgctct 1381 cgcagctggc cattaagccc ggtcaatatg tcgcaggaaa tatgtacttt acaacaaccc 1441 gcttccatca ggaaaaaaat ggcgcaacct ttgtggatat tgtccgcgat gaagcacatg 1501 acgccagcct gaatctcccc tttaaaggtg atattgacct gaataaatta gcgacgctca 1561 ttaaagaaaa aggcgccgag aacatcgcct atatctgcct tgcggtcacc gtgaatctgg 1621 cgggtgggca gcctgtttca atggcgaata tgcgtgccgt acatgaaatg gccagcacgt 1681 atggcattaa gatcttttac gatgccaccc gttgcgttga aaatgcctat tttatcaaag 1741 agcaggaagc gggctacgag aacgtcagta tcaaagatat cgtgcatgaa atgttcagct 1801 atgccgatgg gtgcaccatg agcggtaaaa aagattgtct ggtgaatatc ggcggcttct 1861 tgtgtatgaa cgatgaggag atgttctcag cggcaaaaga gttggttgtc gtttatgaag 1921 gtatgccgtc atacggcggg ctggccggtc gggatatgga agcgatggct attgggctac 1981 gtgaagccat gcagtatgaa tatattgaac atcgggtcaa acaggtgcgc tatctgggcg 2041 ataaactccg tgaagccggc gtacccattg ttgaaccgac gggcggacat gcggtatttc 2101 ttgatgctcg tcgtttctgt ccacacctga cgcaggatca gttccctgcg cagagcctgg 2161 cagccagcat ctatatggaa accggcgtgc gaagtatgga acgtggaatt gtttctgccg 2221 gtcgtagcaa ggaaacgggg gagaaccatc gccccaaact ggagacggta cgtctcacta 2281 ttccacgccg tgtttacact tacgcgcaca tggatgttgt tgccgatggc atcattaaac 2341 tgtaccagca taaagaagat attcgtggtc tgacgtttgt ttatgaacct aaacaacttc 2401 gcttctttac tgcgcgtttt gactttattt aatacaaccc tggccccgca ggggccctgt 2461 ttctctccta tcacccttcc tttatttcag acctgccgcc atggcaggtc tgcagtagaa 2521 ccgttattat ccagcgaatt cagaatgacg ccaaaatgat aataaagagt caacaggaga 2581 atttctcatg gttattaaga aaacaacacc cggtttaatg agtggaacga tgcttatcat 2641 tgccaccgtc ataggtggcg gaatgttctc actgccgatt gctatggctg gcatatggtt 2701 cccaggcgca tcaattattt taacgctcat tgccataatg atgctgttaa ccggactgat 2761 gctggttgaa gtcaatctcc attatggcgg tggtgcgagt tttaacacct tcacacagga 2821 tttattaggt cataaatgga atgttgtggt gggtatcgca tttggctttg tcttgtatat 2881 tttaacttat gcttatattt ctggctcttc tgctgtcatc tctcagacgg tagaaaaata 2941 cagcggattt tatcttccag cccgcttatc tgtgatcatc gtaagcgtgt tggtcggtgg 3001 catcgcatgg tacagctcgc ttttggttgg ccgtattaca acggtgttaa ttatcgggaa 3061 gtttgttgcc ttttttgcta ccttctctgg cctgatatgg catgtcgaag gcgctaaact 3121 tattgacagt gccgcctggg cgctgcctga tacgcaatat ctgccatata ttttaatgac 3181 gctacctttc tgcatcatct cttacggttt ccacggcaac gtgcccagtc tggtgaagct 3241 gtatggcact cagggggtta agaatatcac ccggtcgatt tttattggca cggctttcgc 3301 tctgctgctt tacatattct ggttggtcgt caccatgggc aatatcagcc gcgccgattt 3361 ttcgcccatt atcgccaaag gggggaatat tgatgtattt gtcgaggcaa tagggggctt 3421 atttaccagc acgtctatgg atctgatcct cactttcttt ggtaattttg cggtagccag 3481 ttcattgcta gccgcgacgc tggggctttt cgattatatt gccgatctgt ttcatttttc 3541 agacgaccgt tctggccggt ttaagacggc cctggtaacg tatttgccac ccgctgtcgt 3601 ttgtttcatc ctgcccggtg gctttgtcta tgcaattggc tatgccggtc tggcctttac 3661 gatctggagc gttattctgc cgccttttct tgtgaaagcg gcccgcaagc gttttcccac 3721 tgcagtctat accgcaccct gtaataacat gatccttaat ctggttatcg tggtgggggg 3781 attcgtttac ctgacggtgg tacttgatgt attccggctg ctgccttcgt ttagctaaag 3841 tgaagcgagc gcgatgtgtg caccttatca ccatcaccat cctgtgctct catgctgcct 3901 gattagccca gtgtcccttg ccgggggctg agcgactcac gtcttcaaca cttctcaggc 3961 ttcagccgcg atgctcccac ggacaagctg gctgaagctc agtgtcaggg ctcagtgagc 4021 cccgatcgac aaagcgtata acgacctgtt attcaaggtg tgatgacagg cagcaggcta 4081 aagggtaata ccctgttgct gcagtcgcgt tgcgcggaat cttacctgaa ggcaaacctg 4141 catctcttca tggcaacatc ctgagatgag gtctgagcaa tgtgaattgg ggttttaaca 4201 agagcggccc tcattaaaac cagtcagagg gccaggagag atcgggacag tggtatttat 4261 tttgctgatt tattattgat ttttactcgt tcagttaaca gactggtttc aagatcagaa 4321 aaattcaggg ttctcaagaa ggcaggatta atattcttac agggtaacag tcgggtatca 4381 ccaaggttat tgacaagaat gaggtaagga tttgttcctt gcatatcaat cacagagttc 4441 aatttccaca taatttcctc cttggttcat ggatgtcatg aacacagctg gaattatgcg 4501 tggtaatccg ccggaaaaat gaggaatcag tgctacctga tgctctgttt ccctcatggt 4561 aagcattaaa ttataaatac ttgatgtaca tctatgtcat taaattgtca caatgaaagc 4621 catcgcgaat cgcgtaagaa ataactaact caaacttgat cggaccgacg atgaaacagt 4681 gttgtcataa tggagctagt tatgaagggt tcattttcct gcatcacacg ttttgaataa 4741 atttgaattt attttacatg acgccctgtc aggcattacg cttttttccg gatataagca 4801 tttttcgcca gagacggtgc tgtctctgat tacttatgtc ttaaaatatt aataacatat 4861 aaaccaccaa tttaacctca tggaaacagg cttgtgaggt gtattcctta aatgcgtgtt 4921 atttatttcg ctatctcatc ccagcacatg tcacaattca ggtgttgctt ctggtatggt 4981 agtggacttg catattttca tagcggtaat cttggttttg acaaaaaaat tgttcaacgc 5041 acaatctgca atccactaat tgatcatttt gtcgcggcgg tcatttaatt ttaattaccc 5101 tttttttcat caatgctgtt atgtcacgca aggacacagc gaatcatgcc ggaaataacc 5161 aaataataac tttaattaac agtgagatta caatgccaaa taaattactc agtgctaacg 5221 ccaccgttcc acagtgggat cgccataatc tggttccgag aatcgttcat ctcggatttg 5281 gtgcgtttca ccgtgcccat caggctgtct atgcagacgt tcttgctgct gaacacagca 5341 gcgactgggg ttatattgaa gtcaatctta tcggcggtga gcaacagatt gccgatctca 5401 agtgtcagga ttttctctat accgtggcag aaatgtccgc cagtgcgtgg tcaggcaggg 5461 tggttggcgt cgtcaggcag gcgcttcatg cgcaggttga tggcactgaa gccgtgctgg 5521 aggcgctatg ccagccgcag gttgccattg tgtcgttaac gattaccgaa aagggctact 5581 gccacgcgcc cgcgacaggc gaactgatgc gtgaccatcc cctcatcgta gctgacttag 5641 cacagcccca tcagccccat tccgccccag gcatcatcgt tgaagcgctg gcccgccgca 5701 gagcggcggg gttagccgcc ttcagcgtca tgtcctgcga taacattcct gaaaatggca 5761 gggtgattgc cggggtcgtt tgcgcctatg cgcggcaatg cgatc //