LOCUS VPU20541 5094 bp DNA circular BCT 23-FEB-1995 DEFINITION Vibrio parahaemolyticus LafL (lafL) gene, partial cds, and LafS (lafS), LafT (lafT), LafU (lafU) genes, complete cds. ACCESSION U20541 L06177 VERSION U20541.1 KEYWORDS . SOURCE Vibrio parahaemolyticus ORGANISM Vibrio parahaemolyticus Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio. REFERENCE 1 (bases 7 to 2457) AUTHORS McCarter,L.L. and Wright,M.E. TITLE Identification of genes encoding components of the swarmer cell flagellar motor and propeller and a sigma factor controlling differentiation of Vibrio parahaemolyticus JOURNAL J. Bacteriol. 175 (11), 3361-3371 (1993) PUBMED 8501040 REFERENCE 2 (bases 1 to 5094) AUTHORS McCarter,L.L. TITLE Direct Submission JOURNAL Submitted (31-JAN-1995) Linda L. McCarter, Immunology, The Scripps Research Institute, 10666 N. Torrey Pines Rd., La Jolla, CA 92037, USA COMMENT On Feb 23, 1995 this sequence version replaced gi:155204. FEATURES Location/Qualifiers source 1..5094 /organism="Vibrio parahaemolyticus" /mol_type="genomic DNA" /strain="BB22" /db_xref="taxon:670" /clone="pLM1457 and pLM1796" /clone_lib="pLAFRII" gene 3..221 /gene="lafL" CDS <3..221 /gene="lafL" /note="carboxyl terminus of a protein similar to the FliL flagellar protein of Salmonella typhimurium, Swiss-Prot Accession Number P26417" /codon_start=1 /transl_table=11 /product="LafL" /protein_id="AAA62352.1" /translation="RPERIKDIDNYMPMVQNSLLKLFSDKTFDELQQTGAIDILQNEV KQTLLVAFAKTDIVRDIDDVLLTKYVVQ" gene 234..962 /gene="lafS" CDS 234..962 /gene="lafS" /note="lateral flagellar sigma 28 subunit of RNA polymerase" /codon_start=1 /transl_table=11 /product="LafS" /protein_id="AAA62353.1" /translation="MLDMNPQETYTAPEEVNTPSRPIDENALLQRHQVMVKRVVNQLR VHATSHCSIEDMQQIGLIALVEAGRRYGDIDDTHFPAFAVCRVRGAILDELRRLDWRS RKTRQQAHELNDVTRDLTRSLGRMPTDSEIIKALGTDEQDYYNRQNAALAGEMQSLDQ LMENSTDSHFGGQYDGMEHEHIRRSLDSALGRLSKRDQLLLTLFYQHELNLHEIALVL DLTPPRICQLHKQALKQLNQLMSS" gene 973..1830 /gene="lafT" CDS 973..1830 /gene="lafT" /note="the component of the lateral flagellar proton-driven motor similar to flagellar MotA protein of Escherichia coli, Swiss-Prot Accession Number P09348" /codon_start=1 /transl_table=11 /product="LafT" /protein_id="AAA62354.1" /translation="MQKFLGVLTILVCVFGGYMWAGGKLGAIWQPAEFLIIIGAAAGS LIIGNPPHVLKEMRQQVPATIKGPTEEYEYYMELMALLNNLLETARSRGFKFLDSHIE APEQSSIFLMYPLVSEDHRLISFITDNLRLMAMGQMSPHELEGLLEQEIEAIQNELLL PSRSLQRTAEALPGFGILAAVGGIIITMQAIDGSIALIGYHVAAALVGTFIGIFGCYC GLDPLSNAMAQRVKRNMTAFECVRATLVAYVAKKPTLLAIDAGRKHIQLDIKPTFNQM EKWLAEQEG" gene 1830..2822 /gene="lafU" CDS 1830..2822 /gene="lafU" /note="the component of the lateral flagellar proton-type motor similar to the flagellar MotB protein of Escherichia coli, Swiss-Prot Accession Number P09349" /codon_start=1 /transl_table=11 /product="LafU" /protein_id="AAA62355.1" /translation="MQKQEHVVFKRAKAHGHDEPHGGAWKVAFADFMIALMALFLVLW VMQVVDKEERKAIVAHLHSSSVFDKSYGNPFDTSQSISPIDLAQDSSVPSKHNSNHVV SSYFQGDGDGPEINSLVPGTFDTQEQLAALAKVIEEMTAQINAQGNVNVTVTPQGLRI VLQDDYKQHMFSRGGAELTPFFEDLLLALAPLFEQVTNPLIISGHTDAIPFKKRFGRQ SNWALSASRADVARKTLVEGGMPDDRVMQVTGMSDRALLNPDEPDSSENRRIELFILT TPAAKVLETLFGNQDDSELQKAKQKAEFNQPVIRQEVIRYSADAEKQEAKIQAL" BASE COUNT 1409 a 1288 c 1124 g 1273 t ORIGIN 1 gtcgaccaga acgtattaaa gacatcgata actacatgcc aatggttcaa aactcgcttt 61 tgaagctgtt tagcgacaaa actttcgatg aactacaaca gacaggcgcg atcgatattc 121 tgcaaaacga agtgaagcaa acgctgttgg tagcctttgc gaagactgac atcgtgcgtg 181 atatcgatga tgtactgctg acgaaatacg ttgtgcaata acggagcaca accatgttag 241 acatgaaccc tcaagaaacg tacaccgcac cagaggaagt gaacacacca tcacgcccga 301 ttgatgaaaa cgcacttttg caacgtcatc aagtgatggt gaaacgcgta gttaaccagc 361 ttcgcgttca tgccacttcc cattgcagta tcgaagatat gcagcaaatt ggtcttatcg 421 cgctggttga agcaggacgt cgttatggag acattgacga tactcacttc ccggcgtttg 481 cggtttgccg tgtacgcggc gcgatcttag atgaactgcg ccgtttagac tggcgctcac 541 gtaagacacg tcagcaagcc catgagctta acgacgtcac acgtgacctc acccgctcgt 601 taggtcgcat gccaacggac tcagaaatca tcaaagctct cggcaccgac gagcaagatt 661 attacaaccg tcaaaacgcg gcgcttgcag gtgaaatgca aagtctcgat caactgatgg 721 aaaacagcac cgacagccac tttggtggtc aatacgacgg catggagcac gagcacattc 781 gtcgtagctt agacagcgca ctaggccgat tgtcaaagcg agatcaattg ctactgacgc 841 tgttttatca acacgaactc aatttacacg aaatagccct cgtcttggat ctgacgccac 901 ctcgaatttg tcagcttcat aaacaagcgc tgaaacaact caaccaatta atgtcctctt 961 aggagtcaca agatgcaaaa gtttttagga gtcctcacta tccttgtgtg tgtcttcggc 1021 ggatacatgt gggctggcgg taagctaggt gcaatttggc aaccagcaga atttctgatc 1081 atcatcggcg cggcagcggg ttctctcatt attggtaacc caccacacgt gctaaaagag 1141 atgcgccaac aagtgccagc aaccatcaaa ggtccaactg aagagtacga gtactacatg 1201 gagctgatgg cgctattaaa caacctgcta gaaacagcgc gtagccgtgg tttcaagttt 1261 ttggattctc acatcgaagc accagaacaa agctctatct tcctgatgta cccgctagtt 1321 tctgaggatc atcgtctgat ttcgttcatt actgataatt tacgtttaat ggcgatggga 1381 caaatgtcgc ctcatgaatt agagggactg ttagaacaag aaatcgaagc tatccagaac 1441 gaactgctgc tgccttcacg ctcattacag cgtaccgcag aagcactacc tggtttcggt 1501 attcttgccg cagttggtgg catcatcatc actatgcaag ccatagatgg ttctattgcg 1561 ctcattggct atcacgtagc cgctgccctt gtaggtacat tcattggtat ttttggttgt 1621 tactgtggtc tagatccact aagtaacgcc atggctcagc gagtgaaacg taatatgacc 1681 gcttttgaat gcgtacgcgc aacgctcgtt gcttacgtcg ctaaaaagcc aacattgctc 1741 gccatcgacg ctggccgtaa acacattcag ctagacatca aaccaacatt caaccaaatg 1801 gagaagtggt tagctgaaca ggagggataa tgcaaaaaca agagcatgta gtgttcaaac 1861 gtgccaaagc tcacggccat gacgaacctc atggcggcgc gtggaaagtc gcgtttgctg 1921 acttcatgat cgccctaatg gcgctgtttc ttgtgctttg ggtcatgcaa gtggtggata 1981 aagaagagcg taaagcgatt gttgcccact tgcatagctc aagcgtgttc gacaagagtt 2041 acggcaaccc atttgatacc tcacaaagta tctctcctat cgacttggca caggactctt 2101 ctgtgccaag taaacacaat tccaatcacg ttgtgagctc ttattttcaa ggtgacggtg 2161 atggtccaga aattaactct ctagttcctg gcaccttcga cacccaagag caacttgctg 2221 ctctggcaaa agttatcgaa gagatgaccg cgcagatcaa cgcgcaagga aacgtcaacg 2281 tgactgtgac accacaaggc ttgcgtatcg tgttgcaaga cgattacaaa cagcacatgt 2341 tcagtcgtgg tggagccgag cttacgccat tttttgaaga tttactgttg gcacttgccc 2401 ctcttttcga gcaagtaacc aacccattga tcatcagtgg tcataccgat gcgattccgt 2461 ttaagaaacg ttttggccgt cagtcgaact gggcgctgtc ggcatcgcgt gctgatgtgg 2521 cgagaaaaac gctggttgaa ggcggaatgc ctgatgatcg cgtcatgcaa gttactggca 2581 tgtcagatcg agcgttgctg aacccagatg agccagattc aagcgaaaac cgtcgaatcg 2641 aactgtttat tctgacaaca ccagcagcaa aagtgcttga gaccttattt ggcaatcaag 2701 atgacagcga gctgcaaaaa gcgaaacaaa aagcggaatt taaccaaccc gttattcgac 2761 aagaagtgat ccgttactcg gcggacgcag aaaaacaaga agcgaaaatc caagcactat 2821 aacgcttgtc aacgccataa accacaaagg tcacctcgcc ctgctggtga cctttttaat 2881 ccctaatcca attgccgtga cttttagtag agttcaatat gcacgagcca atgcccgaca 2941 caaaaagacg tgatgtgttg aagaaagcct ttttgtggct aatcatcttc gactatttat 3001 tattggcgtt ttttcttacc caactctcta gcctcaacct aaacagtggc accatgatca 3061 gcctgctgct cgtggtttac aatgttctgc ttgtgtcgtt gtgttttcaa cgaactaaca 3121 agcaagactc atacatcatc tacccagtgt tatcagcaac gttgctcgct tttgtctgct 3181 tcctttactt tttttttctg gtttaagagc gccataacct aatcaagcac gcgttcactg 3241 atcatacgat tgaacgcaac gaggtcaaat gagcctttaa tttcaaaccg aactcgtccc 3301 acttcactta agaaaaactc aatttcgcaa tcgagatcaa acgtgccgga agtctcaata 3361 gagaatgcat tgatcttact gtaaggcagc gacgtataat ccacttttga gcccgtaatc 3421 ccttgcacat tcgccgcaat cactcgtttg ttggtaaaca ccacttggtc acgaacggtt 3481 ttaaaagcgg cgaaaatggt ctcactatca atcaaaaatt tgtggaaatc atctctgact 3541 ttggaaacgt caataggctt aagcttgaac acagaggagt tatcgaagtc gatcatgagt 3601 cgtcctttaa ataggctgaa aaacgaattt ctcaacgtat cagaccacac cggttttgcc 3661 tatctacctc aaccgttttt gcttgattca tctactgcaa aacccaaatt acttccaacc 3721 ctgccgccat aactctgggt ctttcagatc caataaaaac cggcagttct gcagggctga 3781 aacgcacact aacgcgcctc aaatcactct gcagcaacgc caacgcacga tttatcgaat 3841 cattaatgtt gatggcctca tcaagatcga tatccgttct gcccaattgc ttaacggaac 3901 gaactatgcc aaccgtatgc ttagacgcga tacgcaagtc gtgcaggtct cgcccaactt 3961 gccagtaacg aatcgcctct tctggccttt ttaaccaatg ctccgaaagg tagttatttg 4021 gcacggctcg cgctaaatca cgtgccaact ctttaggcaa cccataatat ttttcgaaat 4081 gacgaccgcg ctttctcgct tcactagacg atactttttg cccttgcatc aaaccaaaat 4141 caaagaactg actcgcctct gggtgcactt cttcaagcag cgtcatgatg acggactcta 4201 aacgctccga tttactgctg accacaccaa tcgcattgtt aagttcgtgt gcgatacctg 4261 cggctaactg accgagtgtt gtcatttgct ctgcggtgtg gagcttttgc agcgccttct 4321 cttttgctat cgcttcttgc atcgcgcgcc gctgacggcg agacaactca ttcaccataa 4381 cgggcataaa ctgtgtggtt aatggcccgt aagtttcttc ttcaacggct ggcgtatcgc 4441 gttctatcca cgcaagttct acatcggttt gtgcaacaac cgtagatgag gcagtccatg 4501 ttcctgaaaa aaaactgtgc actccaataa atgccccttg agaagcagaa aatacctgaa 4561 tgggctttct gtcttcgtcc gcatagaagc cagcaagctc gccagagagc acatagtata 4621 gacggtcgtt gtagccttgc tgttcgatca atacggagcc ggccaacaca gtcagccgac 4681 gttcgatatg attaaagtag cgttctacta acgcatctaa cttggtttcg tacatgtatt 4741 acccaatatg cccaaccgta tgaagaatcc acaccatcac aaagcttagc agcacaccaa 4801 caataccaag taccgcaccc actttcgcca tttggctact ttctacatgc ccagtggcat 4861 gcgcgagtgc gttaggcggc gtactgatag gcagtgacat accaagcgaa gccgcgaagg 4921 tcacaacaag aataagcgtg acttcccccc ctaatggcgt caaagaagcc atggacgtac 4981 caagtgcagc cattattggc atcagcaagt tggctgtggc cgtgtgcgac atgaagtttg 5041 ccattagtaa gcaaaggaat gccgcgccga atagcaccac ataaggcgag aatt //