LOCUS QGUQ01000367 2711 bp DNA linear ENV 18-JUN-2018 DEFINITION Firmicutes bacterium isolate ZC4RG37 NODE_38126_length_2711_cov_3.868034, whole genome shotgun sequence. ACCESSION QGUQ01000367 QGUQ01000000 VERSION QGUQ01000367.1 DBLINK BioProject: PRJNA317502 BioSample: SAMN09092809 KEYWORDS WGS. SOURCE Firmicutes bacterium (compost metagenome) ORGANISM Firmicutes bacterium Bacteria; Firmicutes. REFERENCE 1 (bases 1 to 2711) AUTHORS Moura,L. and Setubal,J.C. TITLE Direct Submission JOURNAL Submitted (08-MAY-2018) Bioquimica, Instituto de Quimica, Av. Prof. Lineu Prestes, 748, Sao Paulo, SP 05508-000, Brazil COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.11 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 3.1x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/25/2018 14:28:00 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 2,713 CDS (total) :: 2,654 Genes (coding) :: 2,549 CDS (coding) :: 2,549 Genes (RNA) :: 59 rRNAs :: 1 (5S) complete rRNAs :: 1 (5S) tRNAs :: 54 ncRNAs :: 4 Pseudo Genes (total) :: 105 Pseudo Genes (ambiguous residues) :: 0 of 105 Pseudo Genes (frameshifted) :: 12 of 105 Pseudo Genes (incomplete) :: 92 of 105 Pseudo Genes (internal stop) :: 5 of 105 Pseudo Genes (multiple problems) :: 4 of 105 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2711 /organism="Firmicutes bacterium" /mol_type="genomic DNA" /isolate="ZC4RG37" /isolation_source="ZC4 (Zoo Composter number 4) at the Sao Paulo Zoo" /db_xref="taxon:1879010" /environmental_sample /geo_loc_name="Brazil: Sao Paulo" /lat_lon="23.6265 S 46.6198 W" /collection_date="2013" /note="metagenomic; derived from metagenome: compost metagenome" gene complement(<1..362) /locus_tag="DIU69_10920" CDS complement(<1..362) /locus_tag="DIU69_10920" /inference="COORDINATES: ab initio prediction:GeneMarkS+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="PZN07889.1" /translation="MRLMYLKARTRLIGAVNRLARTVPWPLTMTLGYALLVMAVLALV FPHLWLIHGGWGPWWFFILALLPVVLWAMLMLQGLANVRRGRVTAAFVLLGAPLWVWA WVEWTMAGLLARWVLEQPL" gene complement(1913..>2711) /locus_tag="DIU69_10925" CDS complement(1913..>2711) /locus_tag="DIU69_10925" /inference="COORDINATES: protein motif:HMM:PF02867.13" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=2 /transl_table=11 /product="ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent" /protein_id="PZN07890.1" /translation="HPGEELPEYFVTALQLTPEEHVRMQAAVQRWVDASISKTVNCPR DWTVEDVERLYRLAYELGCKGITIYRDGSRSEQVLAATERKDGAEEKAGKAPDPEPFG KRRPHPRPPARKGQTIERPTPLGTAHVTVNSWQDVSGYYGPMETFIAVGKAGSEVQAM SEALGRVISVSLQSGVDPREIARALRGIGGPNPVGFGPSRVRSVPDAVGQVLEAILEA EELAAQHLPAAASEEERDLDLCPKCGAPALVRQDGCEKCLECGYSRC" BASE COUNT 542 a 882 c 799 g 488 t ORIGIN 1 agcggctgct caagcaccca ccgtgccaga agaccagcca tggtccactc cacccatgcc 61 cacacccaga ggggtgcacc gagcagcacg aaagcggcag tcacccgccc ccggcggacg 121 ttggcgaggc cttggagcat cagcattgcc cagagcacaa ccggcagcag ggccaggatg 181 aaaaaccacc acgggcccca gcctccgtgg atcagccaga gatgcggaaa gacgagggca 241 aggacggcca tgaccaaaag tgcgtagccc agcgtcatgg tcagcggcca cggcacggtc 301 cgggccagcc ggttgacagc gccgatcagg cgcgtccggg ccttgaggta catcagccgc 361 acccgcggct cccctcctcc aaccaaaagg gcggcctacc gggttgcccc ggctaagccg 421 ccctcaaggc gctttgcatc ttcgcttcaa gactaccagc ccccgcaaag tggtgcaacc 481 ggccctgcca ccaggcagaa accccatcgt caccccggcg acctccaatc tgccgtcccc 541 gatccccaga cgacccggtc tccagacgat cgggtgcgta cgcccgccca caccgggtaa 601 gaccgtggcc cgggttggca ctccatcgac ctgggtggcg gtgcatcttg agcgagccaa 661 cgcgccaaac ttgacactgc gcaggaaccc cgcagccccg aggcgtgagc aaagctgtcc 721 ccccccccag ctgcagctta atgatgggcc atcgacacgg tggccttgtc gacgaacaat 781 atcgaagtcc gtcgacaagt tcctctcttc acatgactcc ttttggaagg acccgtacct 841 tcaggggcga actccattgc cagaccgcca aaagcgaccg tcacgcaccg tgcagagtat 901 cctgagacac tccattaaac cacatccgaa acacggatcg gaggcatgga gcatggctgc 961 cccatttcgt tgtgactttt gcggctcaga aaccccttat gtggtgggag gtgaaaatgc 1021 tcgcatttgc ccagcctgcg tgaaagccgc cctgtcggtc aaggatcgcg tgaaggaagg 1081 tggctatgag gaggagcgcg gatttcgcat cttatccgac aaggaggctg agactgtaca 1141 gtgcgcactt tgtaggcaag ttctcgattg ttcattgagg actcccgtac gattcttgaa 1201 ggccaaccac cttgttttat gtagtcgctg cgtagataac tgcatggaga tcatccaaaa 1261 agaacgccca gccatgggca atgagagtta ggtcattctg ggaggggaat gcgccatgat 1321 gcggaaacat ccgcgtctca tgcgggtttc ctccatcgta gcgctagttg ccgtgttgag 1381 ccttgtggct tccccggccg gtgctcatac gatgaatccc ggaatggcgg aaaccaaccc 1441 agaccaaggg gaaatatctc ctcaacatac cattataagt agttgtggag aggtagattt 1501 cacggtatat agagtttatc cgtcaggtac aggatacgct cgtgtgacta ttgtgagtta 1561 cagggggccc attgttagcg gatattggaa gattacgtgg ggcgatggca cttccagtag 1621 cggctacatt ccgcctaata gaggtacgta ctcgttccag gttagccaca gttatcctaa 1681 cccctatcag tcctatacag caacgctgac ggggtgggtc atagctgctg gagcggtctg 1741 ttccttcatt ccgcattccc acactctgta gccaggttaa gagtgcttgc agtgctctgg 1801 gtaagcccta ctagctaccc agggtactgt tgcgtcatca tgctgcacaa gaaagggccc 1861 gccggggttt cacccggcgg gccaccatta ggcgcatgcc acccgagatc ggctagcagc 1921 gcgagtaacc gcactccagg cacttttcgc agccatcctg gcgtaccagg gctggtgccc 1981 cacacttcgg acagaggtcc aagtcccgct cctcctccga ggccgcggcg ggcaggtgct 2041 gcgcagccag ctcctcggct tcaaggatgg cctccagcac ctggcccacg gcgtccggca 2101 ccgaccgcac ccgggacggg ccgaacccaa cgggattggg ccccccgatg ccgcgcagcg 2161 cacgggcgat ctctcgcggg tccacgccgg actgcaggga cacggagatg acgcgcccga 2221 gggcctcgga catggcctgg acctcggacc ccgccttgcc cacggcgatg aatgtctcca 2281 tcggcccgta gtagccggag acgtcttgcc aggagttgac cgtcacgtgg gcagtcccaa 2341 gcggcgtagg ccgctcgatg gtctgcccct tccgggccgg cgggcgcggg tgcggacggc 2401 gcttgccgaa cggctcagga tcgggtgcct tgccggcctt ctcctctgcg ccgtccttgc 2461 gctcagtcgc cgccagcacc tgctccgagc ggctgccatc acggtagatc gtgatgccct 2521 tgcagcccag ctcataggcg agccggtaca gccgctcgac gtcttccacc gtccagtccc 2581 gcgggcagtt gacggtcttc gagatcgacg cgtcgaccca gcgctgcacg gccgcctgca 2641 tgcggacgtg ctcctcgggc gtgagctgca gggcagtcac gaaatactcg ggcagttcct 2701 cgccggggtg c //