LOCUS NVRY01000135 5220 bp DNA linear ENV 28-SEP-2017 DEFINITION Dehalococcoidia bacterium isolate NORP155 Contig_sourceCTD_6030, whole genome shotgun sequence. ACCESSION NVRY01000135 NVRY01000000 VERSION NVRY01000135.1 DBLINK BioProject: PRJNA391950 BioSample: SAMN07568969 KEYWORDS WGS. SOURCE Dehalococcoidia bacterium (marine metagenome) ORGANISM Dehalococcoidia bacterium Bacteria; Chloroflexi; Dehalococcoidia. REFERENCE 1 (bases 1 to 5220) AUTHORS Tully,B.J., Wheat,C.G., Glazer,B.T. and Huber,J.A. TITLE A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer JOURNAL ISME J 12 (1), 1-16 (2018) PUBMED 29099490 REFERENCE 2 (bases 1 to 5220) AUTHORS Tully,B.J., Wheat,C.G., Glazer,B.T. and Huber,J.A. TITLE Direct Submission JOURNAL Submitted (30-AUG-2017) Center for Dark Energy Biosphere Investigations (C-DEBI), University of Southern California, 3616 Trousdale Parkway, Los Angeles, CA 90089, USA COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 06-MAR-2016 Assembly Method :: Megahit v. 1.0.3; Geneious v. 6.1.8 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1x Sequencing Technology :: Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/15/2017 14:03:47 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.2 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 1,916 CDS (total) :: 1,893 Genes (coding) :: 1,820 CDS (coding) :: 1,820 Genes (RNA) :: 23 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1 (5S, 23S) partial rRNAs :: 1 (16S) tRNAs :: 20 ncRNAs :: 0 Pseudo Genes (total) :: 73 Pseudo Genes (ambiguous residues) :: 35 of 73 Pseudo Genes (frameshifted) :: 11 of 73 Pseudo Genes (incomplete) :: 20 of 73 Pseudo Genes (internal stop) :: 13 of 73 Pseudo Genes (multiple problems) :: 6 of 73 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5220 /organism="Dehalococcoidia bacterium" /mol_type="genomic DNA" /isolate="NORP155" /isolation_source="marine subsurface aquifer" /db_xref="taxon:2026734" /environmental_sample /geo_loc_name="Atlantic Ocean: North Pond" /collection_date="2014" /collected_by="Ship board science party on R/V Merian" /note="metagenomic; derived from metagenome: marine metagenome" gene 237..503 /locus_tag="COB86_07785" CDS 237..503 /locus_tag="COB86_07785" /inference="COORDINATES: ab initio prediction:GeneMarkS+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="PCH88227.1" /translation="MGRDQPGVAARAEALGFTSVAHRDHLPEDAKRSAISEVPQNPKY MDNSRSHDERLQARNSVADACALIEEIQXAMPTCGKKLETVDRL" gene 635..874 /locus_tag="COB86_07790" CDS 635..874 /locus_tag="COB86_07790" /inference="COORDINATES: ab initio prediction:GeneMarkS+" /note="Derived by automated computational analysis using gene prediction method: GeneMarkS+." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="PCH88228.1" /translation="MNNAISVPEELYREAKSQTEAVGITVDEFAIZAIQARVXXRQID TDEVTEILNNIYTELPPTLDPILSEMQFRSLEKED" gene complement(1001..1555) /locus_tag="COB86_07795" CDS complement(1001..1555) /locus_tag="COB86_07795" /inference="COORDINATES: protein motif:HMM:PF00107.24" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="PCH88229.1" /translation="MSYDAAAILDCYACGAHALNRTPVDPTDTVVVLGTGAIGFTLGQ LAKTYGAGRVVMVGTRHEQLKIAMEAGATDLVVANPKHDPVXAVMEITVGNGADSVFE TVGGSAPTMSQATDMSRNGGAISVLGLFSEPVEINAAIAMRXELRIEWSNNYSSWHGF SEYRTARNVLANGKVNADPIITTH" gene complement(1688..1960) /locus_tag="COB86_07800" CDS complement(1688..1960) /locus_tag="COB86_07800" /inference="COORDINATES: protein motif:HMM:PF08240.10" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="PCH88230.1" /translation="MKASILYGGTDIRLEEVPTPEPGPGEVLFHVRSGGVCGSDLHPY RSSLMEPHERGHELAGEIVXLDDGVTNLTIGQLVGIEAEHLLGCGD" gene complement(1991..4036) /locus_tag="COB86_07805" CDS complement(1991..4036) /locus_tag="COB86_07805" /inference="COORDINATES: protein motif:HMM:PF02754.14,HMM:PF13183.4" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="PCH88231.1" /translation="MVPPENLFGVIPIWLAVYFFAVGTFSAAGSILYYRVFRLIMIGK KPARFDQPLRRLFGALPMILGQKKVLQSVSVRDRAGLAHFFIFWGFLSFTASYGLFIF ADSAWRPFSAKILTDTGVEIFGFYLDILAVVFFVVLVWGAVRRWGIKPRRLSFDLTQK KESLIIMVLIASLMLFTLLTEAFFVASGGEGPHSTPPIGKAIGEAFIAAGIDEGVANG LQGVFWWLHLGIILGFSLYIPLSKHMHLVGAPISFVTRSLEPKGTLTTPDDLETAEVF GASRVQDFNWKQLLDGFSCAVCGRCSDVCPANISGKILSPMHIVENMKEHILEAGPGI LKGEDPQPDKPLIGNWIQEEGLWDCVTCGACVQECPVGVEHIDSIVDMRRFMVMEQAS MPETAQNALLSMEQRGHPWRGTTYTRTDWAEGLDIKILADHPETEILFWVGCTGALEQ RSQAVARSMASVLKRAKVDFAILGNEETCTGDPARRMGNEYLYQILAEQNIQTFNSYB VKKIITICPHCFNTIKNEYPHLGGDYEVLHYTEFVAELIXQGAIRPLXPIETTLAYHD SCYLGRHNEVYEPPRDIANAIPGLTLVEMGRNRERSFCCGAGGGHMWMEESGGQRINH VRTXQFLDTEADIIGVSCPYCLQMFEEGISAEQLEXQKKARDLLEILDESLGPVSGD" gene complement(4134..5075) /locus_tag="COB86_07810" CDS complement(4134..5075) /locus_tag="COB86_07810" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_012870997.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /codon_start=1 /transl_table=11 /product="decaprenyl-phosphate phosphoribosyltransferase" /protein_id="PCH88232.1" /translation="MDDSIQNTGSASQSNVGLALLQTMRPKQWIKNLMVFLPLFFTIN EAWNLDDVSQGVEFISKSGAAFLAFSVLSGATYIFNDLADADRDRAHPRKRHRPIASG RLGTKLAFTSAAVLSALALGGAFVLEPLFGAVTLGYAATMIAYSLVLKSVVLLDVFAI GTGFVLRVVAGAAALQVPISPWLYLCTGLGALFIALSKRRSELASAGDSASQQRDILG KYTLAFLDQLTAIVATSALISYSLYTFTAPNLPDNRSMMLTIPFVTYGLFRYMYLVHT RNLGENPEDIVITDVPLIISIVLWLAIGAAILVVYRA" BASE COUNT 1156 a 1439 c 1480 g 1116 t ORIGIN 1 gagcaacgcc tcgcacagat tgcaatgaac gtattgtcgg attacccggt tcggacgctc 61 ttgacccgag gagatgcccg agtcaagatg agtttgaatc gattccggcc aacgcgcgca 121 tctagcagta cgttccacat tccgaagttc ttaaacaggc agcattatct atcaatcacg 181 ccggtcacgg tattgttccc aagtccttgt actgtgtgcc aatggcgctg gttccgatgg 241 gtcgagatca accaggagtg gctgccagag cagaggcact gggattcact agtgttgccc 301 accgagatca tctgcctgag gacgcgaagc ggtcagcaat aagcgaagtt ccgcaaaacc 361 caaaatacat ggacaactct cggtcgcacg atgagcggct gcaggcccga aactctgtcg 421 ctgacgcgtg cgctctcatc gaggagatac agcrggcaat gccaacttgc ggcaagaaat 481 tggaaacggt cgatagactc tgaaacttga atcgccgggc ttcgagatca gaccgtcgtg 541 taaatttcga taattcgtta caccaatgcg aactatgaaa gcggatgggg attaaactgc 601 gtcgtcggtc agccgacgga ttctcagttg acaaatgaat aatgctatat ctgttccaga 661 ggagttgtat cgagaagcaa aatcgcarac tgaagccgtc gggataaccg ttgatgaatt 721 tgctatcsaa gcgatccaag ctcgtgtcga knggcggcag attgacactg atgaagtgac 781 tgaaatatta aataatattt acacggagtt gccacctaca ctcgatccca tattaagtga 841 gatgcaattt aggtctctcg aaaaagaaga ctagtagatc gaacgtcatc taataccgcg 901 tcaatcaggc gccatttcac gaatggamca tcaccttgat ggcccctgaa tttcgtttgt 961 cgttagcggc ctcaaacgcg gcgttgattt ctgatagggg ctagtgggtc gttatgatgg 1021 gatcggcatt caccttgccg ttggccagta cgttccgagc cgttcgatac tccgagaatc 1081 catgccaaga cgagtagttg ttcgaccact cgattcgcag ttcttyccgc atggcgatgg 1141 cggcgttgat ttccacaggc tctgagaaca gacccarcac gctgatcgcg cccccgttgc 1201 gcgacatgtc ggtggcctga ctcatcgttg gggccgaacc tccgaccgtc tcgaacaccg 1261 agtctgcgcc gttgccgacg gtgatctcca tgactgccty cacagggtcg tgtttggggt 1321 tcgcgacaac gaggtcggtg gctccggcct ccatcgcgat tttcaactgc tcatggcgcg 1381 tcccgaccat cacgactcgg cccgcgccat aggtcttcgc caactggccg agagtgaatc 1441 cgattgcgcc agttcccaga accacaaccg tgtccgtggg gtcaacgggt gtccggttca 1501 acgcgtgggc tccgcaggcg tagcaatcga ggatggcggc ggcatcgtag gacatgtggt 1561 cgggcagggg atagcagttt tcggcgacgc agacgtcgta ttcagagaat ccgtggctgg 1621 gttgccgttc ccagtgccgg aatcctctta tcggacagat gtggtactga ccctgtttgc 1681 agaaccatca atcgccgcac cccagaagat gctcggcctc aattccaaca agttgtccga 1741 tcgtgagatt ggttacacca tcatccaggg yaacgatttc gcccgcaagc tcgtggcctc 1801 gctcgtgagg ttccatcagg gaggaccggt acgggtgcag gtcgctaccg caaactccgc 1861 cggatcgcac atgaaacaga acctccccag gcccaggttc tggcgtcgga acctcctcca 1921 gcctaatgtc cgtgccgccg tagagaatcg acgccttcat atctttccmc gatacctgaa 1981 atctgaaaac ttaatccccs gacaccggcc ccaggctctc gtccagaatc tccarcaggt 2041 ctctcgcctt cttctgaktc tccaactgct cggcgcttat gccctcctcg aacatctgga 2101 ggcagtawgg gcaagagaca ccgatgatgt cggcttctgt gtccargaac tgcycggtgc 2161 ggacgtgatt ratgcgttgc ccyccgcttt cctccatcca catgtggccg cctccggccc 2221 cacagcagaa gctgcgctct cggttgcgcc ccatttcgac cagcgtaagt ccggggatgg 2281 cgttggcgat gtcgcgaggc ggctcataga cytcgttgtg acgtccgagg taacaggagt 2341 cgtggtaggc cagagtggtc tcgatagggr ccagaggcct tatggcgccc tgctygatra 2401 gctctgccac gaactcggtg tartgtagca cttcgtagtc gccgcccagg tgygggtact 2461 cgttttttat tgtgttgaag caatgagggc agatcgtgat tatcttcttg acgtygtaac 2521 tgttgaatgt ctgaatgttc tgttcagcga gtatctgata gaggtactcg tttcccatcc 2581 gacgggccgg gtctccggtg caggtctcct cattccccag tatggcgaag tcgaccttcg 2641 cccgcttgag gaccgacgcc atcgagcggg cgaccgcctg acttcgttgt tccagcgccc 2701 cggtgcatcc gacccagaaa agtatctcag tttcgggatg atcggccaga atcttgatgt 2761 ccaatccctc ggcccagtca gtgcgggtgt aggtcgtccc tcgccacggg tggcctcttt 2821 gctccatgct caggagggca ttctgggcgg tctccggcat gctggcctgc tccataacca 2881 taaagcgccg catgtccaca attgagtcga tatgctccac gccgacggga cattcttgga 2941 cacacgcccc gcaggtcacg cagtcccaca acccttcctc ctgaatccag ttgccgatca 3001 ggggcttgtc aggttggggg tcttcgcctt tcaggatgcc gggtcctgcc tctaagatat 3061 gctctttcat gttttcgacg atgtgcatgg gcgagagaat cttgccgctg atgttggcag 3121 ggcagacgtc agaacatcgg ccgcacacgg cgcatgagaa tccgtccaga agttgtttcc 3181 agttgaaatc ctgaacgcgg ctggctccaa acacctctgc cgtctccaga tcgtcgggcg 3241 ttgtcagggt cccctttggc tccagagaac gggtaacgaa gctgatgggc gcgccaacca 3301 ggtgcatatg cttggataag ggtatgtaga gggagaatcc cagaatgatt cccagatgca 3361 gccaccagaa aacgccttga agcccgttgg ccacgccttc gtcgattcca gcggcgatga 3421 acgcttcgcc aatggccttg cctattgggg gcgtcgagtg ggggccttcg ccgccggacg 3481 ccacaaagaa tgcctcggtc agcagggtga acagcatcag agacgctatc aaaaccatga 3541 tgatgagcga ctctttcttt tgtgtcagat cgaacgacag cctgcgaggt ttgattcccc 3601 agcgtcggac ggctccccag acgagcacaa cgaagaacac gacggctaga atatcgaggt 3661 agaaaccgaa aatctccacg ccagtatcgg tgaggatttt ggccgagaat ggcctccagg 3721 cggagtcggc aaatatgaac agaccgtagc tggcggtgaa ggacagaaac ccccagaaga 3781 tgaagaagtg ggcgaggccc gcgcggtctc tcaccgacac gctctgaagc acttttttct 3841 gtccaagtat catcggcagc gccccaaaca aacgacgcaa aggttggtcg aacctggcag 3901 gctttttgcc gatcatgatc agtcgaaaaa cccggtagta caatatggag ccggccgcgc 3961 taaacgttcc gacggcgaag aaatacactg ctagccagat gggtatgaca ccgaacagat 4021 tctcaggggg raccatcgcg tcctcctacg tatttttggc tacgaaatct ggtggagtgt 4081 agcacagcgc atgggtcacg actacaatct gatatgttcg gcgtccgagg ggatcaggct 4141 cggtacacga craggatcgc cgcgccgatt gccagccaga gaacgatgga aataatcaga 4201 ggcacgtctg tgataacgat gtcttccggg ttctcgccca ggttgcgggt gtggaccagg 4261 tacatatarc gaaacaggcc gtatgtcacg aaggggatgg tcagcatcat cgaccgattg 4321 tcaggaaggt tgggggcggt aaacgtgtag agcgagtagc tgatgagggc agaggttgcg 4381 acgatggccg tcaactggtc gaggaacgca agcgtgtatt tccccaggat gtcccgctgt 4441 tgggacgccg agtcccctgc ggacgcaagc tcgctcctgc gcttggagag cgctatgaac 4501 agcgctccca acccagtgca gaggtaaagc cacggggaga tgggaacttg gagggccgca 4561 gcgcctgcga cgacccgaag gacgaatccc gttccgatgg cgaacacgtc caacaaaacc 4621 acggatttca atacgaggga ataggcgatc atcgtggccg catatcccag cgtcaccgca 4681 ccgaacagcg gctccaggac gaacgcgccg cctagcgcca atgcgctcag gactgccgcc 4741 gaagtgaacg cgagctttgt tcccagtctg cctgatgcaa tcggcctgtg ccttttgcga 4801 gggtgcgccc gatctcgatc cgcgtcggcg aggtcattga agatatatgt ggccccgctg 4861 aggaccgaga acgccaggaa agccgcaccg cttttgctga taaactctac gccttgagac 4921 acgtcgtcga ggttccaggc ctcgtttatc gtgaagaaca acggcaagaa gaccatcaga 4981 ttcttgatcc attgcttggg acgcatggtc tggagcagcg ccaggccaac atttgactgc 5041 gaagcggagc cagtgttctg aatcgaatca tccatgattc gatgatatgg gggagcgaga 5101 gccagcgtca atcaaaattg cgctgtcagt ttgaggctat ctaaccgaag catgtccgag 5161 atttgacggg ttgcttcgat cagctacgtg gcttttgggg tttgaccagc ggtctgtggt //