LOCUS MT279194 8601 bp RNA linear VRL 04-JUL-2021 DEFINITION Tomato chlorosis virus isolate BR segment RNA 1, complete sequence. ACCESSION MT279194 VERSION MT279194.1 KEYWORDS . SOURCE Tomato chlorosis virus ORGANISM Tomato chlorosis virus Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Crinivirus. REFERENCE 1 (bases 1 to 8601) AUTHORS Vicentin,E. and Ribeiro-Junior,M.R. TITLE Direct Submission JOURNAL Submitted (02-APR-2020) Plant Protection, Sao Paulo State University, Avenida Universitaria, Botucatu, Sao Paulo 18610034, Brazil COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. Nov 2019; Geneious v. 11.1.5 Assembly Name :: ToCV Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..8601 /organism="Tomato chlorosis virus" /mol_type="genomic RNA" /isolate="BR" /host="bell pepper" /db_xref="taxon:67754" /segment="RNA 1" /geo_loc_name="Brazil" /collection_date="2019" /collected_by="Eduardo Vicentin" CDS 309..6146 /codon_start=1 /product="ORF1a" /protein_id="QXE32447.1" /translation="MDSQQNLVSFNVDFTEKKIKDTSRVVKRHISNKYNKSFKKRLFL CSCDLNVSIAANSVSTAQGCSVRARIKTRMNVLRQLCGIPHCNFNKLPVSVYRKFGHD FHRINSAIDRYLESSVGSTGGKSLEEIERIDGYTDHGDGYRVRLYSDVNICDVFVKFN AGVATGHDLKIRLQRQKNRITGQVRTVVHAAKNGFGLDFSLWCDSFLLTDSKTSGQKM VMDMIAAVAMKVPDVLPGFDRLYSRVFSKNFKQIRSAFIRECKKYMQTSCDKANASHR EKVTLKVKPSVAVKNVPDVTHKVGPDGAESFVVTYSDGKQRIIVNDDGAVRNLFNATL TNGKYFIHPKAMIPDKSFFSSKTTEYCWLNAFAAVNKKIPDFVVPYPCLRMRVLYNCG LGSVVEKHCKFVKAGLYHFDLRYCAPGKPINLNGYVGSKVDTDIPSLGKNINVIFDDL IGHYVQGTNLRSDNLLSSNIVNRLSDRINTMFSKPKDLSIATSLTASEKRKVIDMFPE LCLNFTDTSYSSHPIATAIRCCENFIMAKRCGNEDFIDAGGDVVHYMLESVKNVHVCT PIVDTKDAHRHISRSAMLDTMWGLKDKVSFCEHKTETCTVEKTNIVAVEVYDMTLKQM AQALLSHKAKRFDFSLIIPPEVCDPVCDVYLLNNSLHVTNNGDKIEYAYGDFGESYFH DRENLRDILRTQMFVYNGVVFKKSLECSRDNLHFFSVVPCLGIKPGVYTLSTHYKKSE SDKIEMTIPVREKLGQVVDKRTSVDRALTYSLIEYVMNTAARVDEKSSDYLVSQYRAK KSMTIKGNKVVPNDCDLPVELVPGYLAIILAEGLRLREKIQYFAKISYHRHYSPSILK IFSLLIQEFVTFAKAKCYDGFVWFLRKCLSDKVLDKVIFGERRIHDCQFIMRFKQEVT VVGESGKHSILGDSIHAFTEASERAETGLADFVDGRPDLFKPDDYEKLYDLVHSGGGN AGFFSKTANYYSPFSLYYSIYNFFSNFTSSASRISLYTNFFISVIDWMRYHSISCFEY FKEVVKVIVCATMGKLKSGMQSLWDKLKRCAKEMKGLVNSDRLSLEKKLDDIFSADDE IAEALSSDVQSIVTEAVLSEQLISSGGGGVISRPMKCVREMYDHSRRSLRWFCTWFLQ QFKLYKRNILYIPEFLRESFDEIFEALKLKILSNDFIEMTIQGMSFFVVNLTTSLFFG KIGLGLNAVSTVFYLSIKYTGLERRFLGTSFVNEHLSSAITTGGFSHPYMIPVRSLVM KSCQNWMKQKLLRYETVSPIVTDLIAKDVLNASVYQYVTPYRVRMGLYFSTLLALLKP TFAGVLLVCILLVAEHVKFYRTVVVQANVHLSFASRLRRLNPTSKARAIKQLLVSKFD RKRFSKDNSDDKFCDTFEDFDCGPTEFGINSKDLVGAGEASTSGQPVVELDYSGNEIK GKSWGDVSDDSISEPDIVDRPDGLVFSSLEITNQREKFLCDSSLLLSDALLQYPVVDV TTNVLTGDNIVDTFSEFFFLEKKKLHVELGKINNVVDFYKSSLTGKNAFYNKVWSLRN KFDDSSLYVSENSKVWYKLKQGEKGHVQLEGVCKYTLDNKLVPFTYFYDDFQVTSDEL MGMFSNRRCLALQSITPRESGFDLNSMLENVTFFNKPPGAGKTTTIVRNMVRDIKSNV RCLALTCTNAGKKEIIHKLRKEGVNNAFSLVMTYDSFLINGGKMDTDMVYCDEIFMIH AGLWVALLSMLQFKKMECYGDKNQIPFINRVPNTLCQYSQKIFFLFRMIHDNVSYRCP PDVCYILSNLRDAAGNLLYPNGVKAVGPNSNLLRSMFVVPLRSAEEVPYSPDVKMIAF TKPEKDDIMRHGRTADGKTNSAQTVNEVQGGTFPKVELYRLRQYDNPIYNDVNQFVVS ISRHTEVMKYRVLSTKMHDTVGQHISSLDKVADHIIRECAFKQQV" CDS <6148..7662 /codon_start=1 /product="ORF1b" /protein_id="QXE32448.1" /translation="TYRLTIEGCYIPDTFSRPASSHLMAVNDFMSVVNPGLAWMQFLH RTILFEYGDFDMPPVEKMVLDFSKYKPYVAGEFVVSKILGKGERTRPDSMKQGIISLS HRNFSAPRINERLDVYKTAERLCQNLVRSFDFSRLYENYDVILPDMFKIDDWLQDRDG SKFGRIKRDMDHKLLVEQFESLKFMIKGEMKPKMDMSSYTAYNPPANIIYYNHLVSMY YSPLFLEVFDRISYCLSKKIVMYSGMNLETLGTLIGSKLQKPLTSYHTLEIDFSKFDK SQGILFKVYEGMIYRFFKFSEDYYTNIEATEYFIKYRGRCGISGELGAQRRTGSPNTW LSNTLVTMGIILSVYDLDDIDLFLVSGDDSLIFSSKPLKNKTDEINRDFGFEAKMIEN SVPYFCSKYIISDRGKIRVVPDPVRFFEKLSVPIRVQDFMSDTLMREKFRSYKDLMKD FDYDTTCVLVDALVCYRYNLPPMCSYAALCYIHCLCANFTTFRRVYESDLTVVI" CDS 7669..8250 /codon_start=1 /product="ORF2" /protein_id="QXE32449.1" /translation="MDLTGCLRKLRQCDRLLERLGNDVSEVHLRAILIDLDECSECLM LCEQEYIRDTDCLMSFLLALKHYEIKFHMDMLNMIYDFKLKTSQLIQDVFRIKVIIRV YLELCEIDPLLAMTEACQDILESGILNIGFISSALGHEPNILITILSMVDFTVVIDDR PLVFIPSKIRFVGDKLGSGHFRWFDKFFFGSDI" CDS 8270..8425 /codon_start=1 /product="P5" /protein_id="QXE32450.1" /translation="MGDRFACDSLDSIARDIHSLYILFFYTFLVGVLLTFIMSCVRGV IEIYRVN" BASE COUNT 2346 a 1472 c 2026 g 2757 t ORIGIN 1 gtaattagct atggacgaca ggcggtgaca caaagtacta attaacttag ctttaaggct 61 ttctggtgtg ttgccagttt gcctgcccgg ttgccactgt gttcagtgtc gaccttatta 121 taccagcatt caccgccata gcattactag aaacagcacg acgagtacac taaactaatc 181 tgccttgctt tactttgcgt tctccttttc gtctcggaga gcgcgcccct tgcccgccgt 241 tgtgggttgt tagtgttcac catataaccc cctcttgttg tgatttagta gtttgtattt 301 tagctattat ggattctcag caaaacctag tttcgtttaa cgtagatttt actgaaaaga 361 aaataaaaga tacgtctaga gtagttaaga ggcatattag taataaatat aataaatcct 421 ttaagaagag actgtttttg tgcagttgcg atttaaatgt ctcaattgcc gcaaactcag 481 tgtcgactgc tcagggatgc agtgtgaggg ctcggataaa aactcgcatg aacgtactta 541 gacagttatg tgggatacca cattgcaatt tcaacaaatt accagtttct gtatacagaa 601 aattcggtca cgatttccat agaataaatt ctgcaataga ccggtatttg gaaagttctg 661 tggggtcaac aggtggaaaa tctctcgagg aaatcgagag aatagatggt tacacggacc 721 atggtgatgg ttatcgtgta agactttact ctgacgtcaa catttgtgac gtgtttgtaa 781 agttcaatgc tggtgttgcc actggtcacg atttgaagat caggctccag agacagaaga 841 atagaattac cggccaagtt aggacggtcg ttcatgctgc gaagaatggt tttgggcttg 901 atttttctct gtggtgtgat agtttccttc tcacagacag taaaacttcc ggccagaaga 961 tggttatgga tatgatagcg gctgttgcta tgaaggttcc ggatgttttg cctggatttg 1021 accgtttgta ctccagagtt tttagtaaga actttaagca gatcagatcc gcttttatca 1081 gagagtgcaa gaagtacatg caaacttctt gtgataaggc taatgcaagt caccgcgaga 1141 aagtgacact caaagtgaag ccgtcagtcg cggtgaagaa cgtgccagat gtgacccata 1201 aggtcggacc cgatggtgca gaatcattcg tggtcactta ttctgatggg aaacaacgca 1261 taattgtgaa tgatgacggt gccgttagga atttgtttaa cgctactctc accaacggta 1321 aatatttcat tcacccgaag gctatgatcc cagataaaag ctttttctcg tccaaaacaa 1381 ctgagtattg ttggttgaat gccttcgctg ccgtcaataa gaaaatacca gatttcgttg 1441 taccttaccc atgtcttagg atgcgggtgc tgtacaactg tggtttgggc agtgtagttg 1501 agaagcattg taagtttgta aaagccggtt tataccattt tgatcttagg tactgtgcgc 1561 ctggaaaacc catcaatctc aatggttatg ttggttccaa ggttgatact gatataccgt 1621 ccctaggtaa gaacataaat gtcatctttg atgatttgat cggacattat gttcaaggta 1681 ctaatttgag atctgacaat ctgctatcta gcaatatcgt taatagattg tctgacagaa 1741 taaacacaat gtttagcaaa ccgaaagatc tctcgatagc gacttcgctc accgcatcag 1801 agaaacgtaa agtgatcgat atgtttcctg agttgtgttt gaatttcacc gacacatctt 1861 actcctctca tcctatagcc actgcaatta ggtgttgtga gaacttcatc atggccaaac 1921 gatgtggtaa tgaggatttt attgatgctg gtggtgatgt tgtgcactat atgttagaga 1981 gtgtgaaaaa cgttcacgtt tgcacaccaa tagttgatac caaggatgcc catagacaca 2041 tttcgaggag tgctatgctc gataccatgt ggggacttaa ggacaaggtg tctttctgtg 2101 agcataaaac tgaaacttgc acagtggaga aaactaatat tgtagcggtg gaggtttatg 2161 atatgactct gaaacaaatg gcacaagctc ttctgtcaca taaggccaaa aggtttgact 2221 tcagccttat aataccacct gaggtgtgcg acccggtgtg tgatgtgtac ctgcttaaca 2281 atagcctaca cgttaccaat aacggtgaca agattgagta cgcatacggc gactttggtg 2341 agagttattt tcatgataga gagaacttga gagacattct acgaactcaa atgttcgttt 2401 ataatggagt tgttttcaag aagtcattag agtgttctcg tgacaatctg catttcttct 2461 ctgtggttcc ttgcttgggc attaaaccgg gtgtctacac tttgtcaact cattataaaa 2521 aatctgagtc tgataagatt gagatgacaa tacccgttcg ggagaaactc ggacaagtcg 2581 tcgacaagcg gacgagtgtt gatagggcac ttacttacag cttgatagaa tatgtcatga 2641 acacagcggc tagggtggat gagaaatcct ctgactattt agtttctcag tacagggcca 2701 agaagagtat gaccataaaa ggtaataaag tggtgcctaa tgactgcgat ttacctgtgg 2761 agttggtgcc aggttaccta gctattattt tggccgaggg attgaggctt agggagaaga 2821 ttcaatactt tgcaaaaatt agttatcatc gtcactacag cccgtcgatt ttgaagatat 2881 tttccctctt gatacaagag tttgtaacgt tcgctaaggc taagtgttac gatgggtttg 2941 tttggttcct tcgcaagtgt ctgtctgata aggtacttga taaggtgata tttggtgaga 3001 ggcgtatcca tgactgccag ttcataatgc ggttcaagca agaggtcact gtggtcggcg 3061 agagtggtaa gcattcgatc ctcggtgatt ctatccacgc cttcactgaa gcaagtgaga 3121 gagctgaaac tggactggcc gattttgtgg acggtagacc ggatttgttc aagccagatg 3181 actatgagaa gttgtatgat ctagttcatt ctggtggtgg aaacgcaggg ttttttagta 3241 agacggctaa ttattactct ccgttttctt tgtattattc tatttacaat tttttctcga 3301 attttacttc ttcagcttct cggatttcct tgtataccaa tttctttatt tcagttatag 3361 attggatgcg ttatcactct atctcttgtt ttgaatattt taaggaggtc gtaaaagtca 3421 tagtttgtgc tactatgggg aagttgaaat caggtatgca gtctctttgg gacaaactca 3481 agcggtgtgc taaagagatg aaggggctcg tgaacagcga caggctgtct ttggagaaaa 3541 aacttgatga tatcttctct gcggacgacg agattgctga agcattgtcc tcggatgtac 3601 aatctattgt tactgaagca gtgctttcag agcaattgat ctcgtctgga ggcggtggag 3661 tcatatcacg accgatgaaa tgcgttcgtg aaatgtacga tcattcacgg cgatccttgc 3721 ggtggttttg tacttggttt ctccagcaat ttaagcttta caaaagaaat attttgtaca 3781 ttcctgaatt tttaagggag tcctttgatg agatctttga ggccctaaaa ttgaaaattt 3841 tgtctaacga tttcatcgag atgacgatcc aaggtatgtc tttctttgtt gttaatttaa 3901 ctacatcgtt gttttttggt aagataggtt taggtttgaa tgccgtgtct actgttttct 3961 acctttccat taaatacact ggtttggaga gaagatttct tggtacttca tttgtcaatg 4021 aacatctctc ttccgctata acgactggtg gtttttccca tccgtacatg attccagtga 4081 ggtctttggt tatgaaaagt tgccagaatt ggatgaaaca gaaactgttg aggtatgaga 4141 cggtctctcc aatagttact gaccttattg ctaaggacgt gttaaacgcg tcagtttatc 4201 agtatgtaac tccctacaga gttagaatgg ggttgtattt tagtactttg ttggccctac 4261 tgaaaccaac atttgctggc gtgctcctgg tgtgtattct gttggtggcg gaacatgtaa 4321 aattttacag aactgttgtt gttcaagcca atgttcattt atcctttgct tctcgactga 4381 ggagattgaa tcctacttcg aaggctagag cgattaagca gttactcgtt tccaagtttg 4441 ataggaagag atttagcaag gataacagtg acgataagtt ctgcgataca tttgaggact 4501 ttgattgcgg tccgaccgag tttggaataa actctaaaga tttggttggt gctggggagg 4561 cctcgacgtc tggacagcct gtggtagagt tggattactc cggcaatgag atcaaaggga 4621 agagttgggg agatgtgtct gacgattcta tttctgagcc ggatattgtg gacagaccgg 4681 acggtctggt gttttcaagt ttggagataa ctaatcaaag ggagaaattc ttgtgtgata 4741 gcagtcttct tttgagtgat gcccttttgc aatatccagt tgtggatgtg acgaccaacg 4801 tcctgactgg tgataatatt gttgacactt tttcagagtt tttcttttta gagaaaaaga 4861 aattacatgt ggagttaggt aagattaata atgttgttga tttttacaaa tcctcattga 4921 ccgggaagaa tgctttttat aataaggttt ggagcttgcg aaacaaattc gacgattcgt 4981 cgttatatgt ttcggaaaac tcaaaggtct ggtacaagtt gaaacagggt gagaagggtc 5041 atgttcaact tgaaggtgtg tgcaaataca cgcttgacaa caagctggtt cctttcactt 5101 acttttatga tgattttcag gtcaccagtg atgaattgat gggcatgttt tccaacagga 5161 gatgtttggc attgcagtca atcacaccgc gtgagtccgg gtttgacctt aatagcatgt 5221 tggagaatgt cacgtttttc aataaacctc ctggtgctgg taagacgacc accattgtga 5281 ggaatatggt gagagacatc aaaagtaatg tgaggtgttt ggccctgacc tgcacaaatg 5341 ctgggaagaa agagatcata cataagctca ggaaggaagg agtcaacaat gcattcagct 5401 tagtgatgac atatgactct tttctcatca atggtggtaa gatggatact gatatggtct 5461 attgtgatga gatctttatg attcatgctg gactgtgggt ggccctatta tcaatgttgc 5521 aattcaagaa aatggagtgt tacggtgaca aaaaccagat tccatttatc aatagagtgc 5581 cgaatactct ttgtcagtac tcccagaaga tatttttctt gtttaggatg atccacgaca 5641 atgtttcata cagatgcccg ccagatgttt gctacatttt gtctaatttg agagatgctg 5701 ccggtaatct gttgtatcca aatggtgtca aggctgtagg gccgaacagc aatcttctcc 5761 gttctatgtt cgtggtgcca ctgagatctg ccgaggaagt tccatacagt ccggatgtga 5821 agatgattgc tttcaccaaa cctgagaagg acgacataat gcggcatggt agaacagcgg 5881 atggtaagac caattcagct cagactgtta atgaggttca aggtgggact tttcccaaag 5941 tcgagttgta cagattgagg caatatgata atcccatcta caatgatgtc aaccaattcg 6001 tggtcagtat atccagacac acggaggtta tgaaatatag agtcttgtct acgaaaatgc 6061 acgacactgt tggacaacat atatcatctt tggataaggt tgctgatcat atcataaggg 6121 agtgtgcatt taaacagcag gtttaacact tatcggttga ccattgaagg ttgttatatt 6181 cctgacactt tttcgagacc tgcctcatct catttgatgg cagtcaacga ttttatgtca 6241 gtggtcaacc cgggattagc ttggatgcaa tttttgcaca gaactatatt gtttgagtat 6301 ggtgattttg acatgccacc tgttgagaag atggtccttg atttttcaaa atacaagcct 6361 tatgtcgcag gggagtttgt tgtctcgaaa attcttggca aaggtgagag gacgagaccg 6421 gacagtatga aacaggggat aatctcattg tcacatagaa atttttctgc accgagaata 6481 aatgaacgtc tggacgttta taagactgct gaacgtttat gtcagaatct cgttagatct 6541 ttcgacttct caaggttgta tgagaactat gatgtgattc ttcctgacat gttcaaaatt 6601 gacgattggt tgcaggatag agatggttcg aagtttggtc ggataaaaag ggatatggac 6661 cacaaattgt tggtcgaaca gtttgagagc ttaaaattca tgatcaaagg ggagatgaaa 6721 ccgaagatgg atatgtcgtc ctatacagct tataatccac cggcgaatat catctattat 6781 aaccatctgg taagtatgta ttattctccg ttgtttctgg aggtctttga taggatatca 6841 tactgtctta gcaagaagat agttatgtat tccgggatga atctagaaac tctcggcacc 6901 ctgattggtt ctaaactgca gaagccgttg acatcatatc acactttgga gattgatttc 6961 tcaaagtttg ataagtccca aggtatccta tttaaagttt atgaggggat gatttaccgg 7021 tttttcaagt tttccgagga ttactatacc aacatagagg ccactgaata cttcataaag 7081 tatcgtggta ggtgtggaat cagcggggag ttgggtgcac aaaggagaac ggggtcaccg 7141 aacacttggt tgtcaaacac attggttact atgggtatca tactcagtgt ttacgacctg 7201 gatgatattg atttattctt agtaagtggt gacgacagtt tgatcttttc gagtaaaccc 7261 ttgaagaata aaactgatga gataaacaga gatttcggtt ttgaggctaa gatgatagag 7321 aattcagtgc cgtatttttg ctccaaatat atcatcagtg atagaggaaa aatcagagtc 7381 gttcctgatc ctgtgaggtt ttttgagaag ttgtctgtcc caattcgagt tcaagatttt 7441 atgagtgaca ctctcatgcg ggaaaaattt aggtcttata aggacttgat gaaggacttt 7501 gattacgata caacgtgcgt tttggtggat gctttggtgt gttataggta caatttacca 7561 ccgatgtgtt catatgcagc gttgtgttat attcattgtc tgtgtgcaaa ttttactact 7621 ttcagaagag tctatgagag cgatttgact gttgttattt aggtcagtat ggatctcact 7681 ggttgcttgc gtaagcttcg acagtgtgat cgacttcttg agaggctggg taatgacgtt 7741 tcagaagttc atttaagagc gatcttaatt gatcttgatg agtgttctga gtgtttgatg 7801 ctttgtgagc aggagtatat cagagacacg gactgcctta tgtcatttct gttggcgctg 7861 aaacactatg agattaaatt tcacatggat atgttgaata tgatttatga ctttaaactg 7921 aaaacgtccc aattgattca ggatgttttt agaattaaag taatcatcag agtgtatctt 7981 gagttgtgtg aaattgatcc acttttggct atgactgagg cttgtcaaga cattcttgag 8041 agtggtattt tgaacatcgg tttcatctct tcggccctcg ggcatgaacc gaacatactt 8101 atcacaatat tgtcgatggt cgattttaca gtcgtcattg atgatcgacc actggtcttt 8161 atcccttcaa aaataaggtt tgttggcgac aagttggggt caggtcattt taggtggttt 8221 gataagtttt tctttgggag tgatatataa tctggttaat attcaaagga tgggtgatcg 8281 ttttgcttgc gattctttgg atagtatagc cagagatata cactctttgt atattttgtt 8341 tttctatacg tttctagtag gtgttttgtt gacattcata atgtcttgtg ttagaggtgt 8401 tatagaaatt tatcgtgtta attagggagt ttttgataat gtttccttcc tttggttatt 8461 tacttcgtat tttataaaat ccaaaaaata tattatgctt tttacatatt gttctgttta 8521 gttggtgtga aaagtgatct acctaaatta cgtgttatac acgtagacct tggtagatct 8581 agtatataaa taaataggtc g //