LOCUS       MT276606                 883 bp    cRNA    linear   VRL 15-NOV-2020
DEFINITION  La Crosse virus strain 6674-15 nucleoprotein N and non-structural
            protein S genes, complete cds.
ACCESSION   MT276606
VERSION     MT276606.1
KEYWORDS    .
SOURCE      La Crosse virus
  ORGANISM  La Crosse virus
            Viruses; Riboviria; Orthornavirae; Negarnaviricota;
            Polyploviricotina; Ellioviricetes; Bunyavirales; Peribunyaviridae;
            Orthobunyavirus; Orthobunyavirus lacrosseense.
REFERENCE   1  (bases 1 to 883)
  AUTHORS   Eastwood,G., Shepard,J.J., Misencik,M.J., Andreadis,T.G. and
            Armstrong,P.M.
  TITLE     Local persistence of novel regional variants of La Crosse virus in
            the northeastern USA
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 883)
  AUTHORS   Eastwood,G., Shepard,J.J., Misencik,M.J., Andreadis,T.G. and
            Armstrong,P.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-APR-2020) Environmental Sciences, Connecticut
            Agricultural Experiment Station, 123 Huntington Street, New Haven,
            CT 06511, USA
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..883
                     /organism="La Crosse virus"
                     /mol_type="viral cRNA"
                     /strain="6674-15"
                     /host="Ochlerotatus triseriatus"
                     /db_xref="taxon:11577"
                     /segment="S"
                     /geo_loc_name="USA: Connecticut"
                     /collection_date="2015"
                     /note="passage history: Vero passage 1"
     CDS             45..752
                     /codon_start=1
                     /product="nucleoprotein N"
                     /protein_id="QPB13328.1"
                     /translation="MSDLVFYDVASTGANGFDPDAGYMDFCVKNAESLNLAAVRIFFL
                     NAAKAKAALSRKPERKANPKFGEWQVEVINNHFPGNRNNPIGNNDLTIHRLSGYLARW
                     VLDQYNENDDESQHELIRTTIINPIAESNGVGWDSGPEIYLSFFPGTEMFLETFKFYP
                     LTIGIHRVKQGMMDPQYLKKALRQRYGTLTADKWMSQKVAAIAKSLKDVEQLKWGKGG
                     LSDTAKTFLQKFGIRLP"
     CDS             64..342
                     /codon_start=1
                     /product="non-structural protein S"
                     /protein_id="QPB13329.1"
                     /translation="MMSHQQVQMDLILMQGIWTSVLKTQNHSTLLQLGSFSSMPQRPR
                     LLSRVSQRGRLTLNLESGRWRLSIIIFLETGTTQLVTTILPSTDYLGI"
BASE COUNT          268 a          165 c          214 g          236 t
ORIGIN      
        1 ttattgttga ctgtttttac ctaagggaaa taatcaagag tgtaatgtcg gatttggtgt
       61 tttatgatgt cgcatcaaca ggtgcaaatg gatttgatcc tgatgcaggg tatatggact
      121 tctgtgttaa aaacgcagaa tcactcaacc ttgctgcagt taggatcttt ttcctcaatg
      181 ccgcaaaggc caaggctgct ctctcgcgta agccagagag gaaggctaac cctaaatttg
      241 gagagtggca ggtggaggtt atcaataatc attttcctgg aaacaggaac aacccaattg
      301 gtaacaacga tcttaccatc cacagattat ctgggtatct agccagatgg gtccttgatc
      361 agtacaacga aaatgatgat gagtctcagc acgagttgat cagaacaact attatcaacc
      421 caattgctga gtctaatggt gtgggatggg atagtgggcc agaaatttat ctatcgtttt
      481 tcccaggaac agaaatgttt ttggagactt tcaaattcta cccactgact attggcattc
      541 acagagtcaa gcaaggcatg atggaccctc agtacttgaa gaaggcttta aggcaacgct
      601 atggcaccct cacagcagac aaatggatgt cgcagaaggt tgctgcaatt gccaaaagcc
      661 taaaggatgt tgagcagctt aagtggggaa aaggaggcct gagtgatact gctaagacat
      721 tcctgcagaa attcggcatc aggcttccat agagggacaa tgaggtgcta aaattaggct
      781 ccaaattcta aattcatata tgtcaatttg attaattggt tatccaaaag ggttttctta
      841 agggaaccca caaaaatagc agctaaatgg gtgggtggta ggg
//