LOCUS MT130386 6256 bp RNA linear VRL 23-AUG-2020 DEFINITION Tropical soda apple mosaic virus isolate I4-12-TSAMV 183 kDa replicase, movement protein, and coat protein genes, complete cds. ACCESSION MT130386 VERSION MT130386.1 DBLINK BioProject: PRJNA592261 BioSample: SAMN13418694 KEYWORDS . SOURCE Tropical soda apple mosaic virus ORGANISM Tropical soda apple mosaic virus Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Tobamovirus. REFERENCE 1 (bases 1 to 6256) AUTHORS Aguado-Garcia,Y., Taboada,B., Moran,P., Rivera-Gutierrez,X., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C. and Arias,C.F. TITLE Tobamoviruses can be frequently present in the oropharynx and gut of infants during their first year of life JOURNAL Sci Rep 10 (1), 13595 (2020) PUBMED 32788688 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 6256) AUTHORS Aguado-Garcia,Y. and Taboada,B. TITLE Direct Submission JOURNAL Submitted (29-FEB-2020) Genetics of Development and Molecular Physiology, Biotecnology Institute, UNAM, Av. Universidad 2001, Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico FEATURES Location/Qualifiers source 1..6256 /organism="Tropical soda apple mosaic virus" /mol_type="genomic RNA" /isolate="I4-12-TSAMV" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:327387" /geo_loc_name="Mexico: Morelos" /collection_date="Apr-2016" CDS 28..4866 /codon_start=1 /transl_except=(pos:3379..3381,aa:OTHER) /product="183 kDa replicase" /protein_id="QNG71039.1" /translation="MAYTQQATTAALASTLRGNNPLVNDLANRRLYDSAVEQCNAHDR RPKVNFPKTISEEQTLIATKAYPEFQITFFNTQNAVHSLAGGLRTLELEYLMMQIPYG STTYDIGGNFAAHMFKGRDYVHCCMPNMDLRDVMRHNSQKESIELYLSRLAQRNKVIP SFQKPCFDKYTDDPQSVVCSKPFQHCDGVSNCTDKVYAIALHSLYDIPADEFGAALLR RGVNVCYAAFHFSENLLLEDSYVSLDDIGATFSREGDVLNFSFVAESTLNYSHSYSNV LKYVCKTYFPASTREVYMKEFLVTRVNTWFCKFSRIDTFVLYRGVYHRGVDKEQFYTA MEDAWHYKKTLAMMNSERILLEDSSSVNYWFPKMKDMVIIPLFDISLQNENKRMSRRE VMVSKDFVYTVLNHIRTYQSKALTYANVLSFVESIRSRVIINGVTARSEWDVDKALLQ SLSMTFFLQTKLAVLKDELLINKFQVHSKSLTEYVWDEVTSAFHGCFPSIKERLIKQN LISVSEKALEIKVPDLYVTFHDRLVREYRCSVDMPTVDVRKSLEKAELMYNALSEISV LKDSDKFDVNVFSQMCDNLGVDPLVAAKVMVAVVSNESGLTLTFERPTEANVALALQP TIASKESGVLKIVSSDVGESSIKEVVQKSEISMLGLTGDTISDEFQRSTEIESLQQFH MASTDAIIRKQMHAMVYTGPLKVQQCKNYLDNLVASLSAAVSNLKKIIRDTAAIDLET REKFGVFDVCSGKWLVKPSTKGHAWGVVMDSNYKCFVALLTYDGDNIVCGETWRRVAV SSESMVYSDMGKIRAIRSVLRDGEPLISSARVTLVDGVPGCGKTKEILARVNLDEDLI LVPGKQAAEMIRRRANSSGLIVATKDNVKTVDSFLMNYGRGRCQYKRLFVDEGLMLHP GCVNFLVAMSLCDEAFIYGDTQQIPYINRVANFPYPKHLSQLEVDDVETRRTTLRCPA DITHFLNQRYEGQVMCTSTVVRSVAQEVVQGAAVMNPVSKPLKGKVITFTQADKSMLL SRGYTDVNTVHEVQGETYEDVSLVRLTPTPVGIISKESPHLLVALSRHTRSVKYYTVV VDAVVSVLRDLECVSSYLLDMYKVDVSVQXQLQVEAVYKGENLFVAAPKTGDISDMQF YYDKCLPGNSTVLNEYDAVTMQIRDNKLNVKDCVLDMSKSVPLPRETGKSLKPVIRTA AEMPRKPGLLENLVAMVKRNFNSPELSGIVDIEDTASYVVDKFFDAYLLKEKKKPKDL PLLSRASLERWIGKQEKSTIGQLADFDFIDLPAVDQYRHMIKQQPKQRLDLTIQTEYP ALQTIVYHSKKINALFGPVFSELTRQLLDMIDSSRFMFYTRKTPSQIEEFFSDLDSEV PMDILELDISKYDKSQGEFHCAVEYEIWRRLGLDDFLAEVWKHGHRKTTLKDYTAGIK ACLWYQRKSGDVTTFIGNTVIIAACLSSMLPMDSLIKGAFCGDDSILYFPKGSQFPDV QQCANLMWNFEAKLFRKKYGYFCGRYIIHHDRGCIVYYDPLKLISKLGAKHIKDREHL EEFRTSLCDVAGSLNNCAYYTQLDEAVSEVIKTAPPGSFVYKSLVKFLCDKRLFQSLF LD" CDS 4868..5638 /codon_start=1 /product="movement protein" /protein_id="QNG71040.1" /translation="MALVVKDDVKISEFINLSTSEKFLPAAMTSVKSVRVSKIDKVIA TENDSLSDVDLLKGVKLIEEGYVCLAGLVVSGEWNLPDNCRGGVSVCLVDKRMLRHDE ATLGSYKTGAAKKRFAFKLIPNYSVTTADAKRNIWQVLVNIKGVAMEKGFCPLSLEFV SVCIVHKTNIKLGLREKITNVSDGGPVELTEEVVDEFVESVPMAERLRKFRGRSNKKS NKFVEKNNNKRGDKGGKLLKKIDNETETESSDAESSSY" CDS 5641..6123 /codon_start=1 /product="coat protein" /protein_id="QNG71041.1" /translation="MSYTISNPNQLVYLASVWADPTELLNLCTSALGNQFQTQQARTT VQQQFSDVWKTVPATNIRFPNAGFKVYRYNAVLDSLITALLGSFDTRNRIIEVENPQN PTTAETLDATRRVDDATVAIRSGINNLMNELVRGTGMYNQAQFESVSGLTWATTATSS " BASE COUNT 1870 a 1116 c 1469 g 1801 t ORIGIN 1 aacattacaa acaacaaaac aactacaatg gcatacacac aacaagcaac taccgccgcg 61 ttagcaagca ctctccgagg gaataatccc ttggtgaatg accttgctaa ccggagactg 121 tatgattcag cggtcgaaca atgcaatgca catgaccgca ggcctaaggt taattttccc 181 aagacgatta gcgaggagca gacgttgatc gcgaccaaag cctatcctga gttccaaatt 241 acgttcttca atacgcagaa cgccgtgcac agtctcgcgg gtggtcttcg gaccttggag 301 ctcgaatatt taatgatgca aatcccctat ggttcaacta catatgatat tgggggcaac 361 tttgctgctc atatgttcaa gggccgtgac tacgttcatt gctgcatgcc taatatggac 421 ttacgtgacg taatgcgtca caattctcaa aaggaaagca ttgaactgta cctttcaagg 481 ctagcgcaaa ggaataaggt tatcccttct ttccaaaagc cgtgctttga taaatacacg 541 gatgatccgc agtctgttgt ttgttccaaa ccttttcaac actgcgatgg ggtaagcaac 601 tgcaccgata aagtgtacgc tattgctctg catagtttat acgatatccc tgcagatgaa 661 tttggggcgg cacttctgag acgaggtgta aatgtttgtt atgccgcttt ccatttttct 721 gagaatcttc ttttggagga ctcttatgtt agtttagatg atatcggggc taccttttct 781 agggaaggtg acgtcctgaa tttttccttt gtagccgaaa gcactttaaa ttatagtcac 841 tcttatagta atgtattgaa gtatgtgtgc aaaacttact tcccggcttc tactagagaa 901 gtctatatga aggagttttt agtaactaga gtaaatacat ggttttgcaa atttagtagg 961 atagatacat ttgtgcttta tagaggtgtg tatcacagag gtgtagacaa ggaacagttt 1021 tacacagcaa tggaggacgc ttggcactac aaaaagactt tggctatgat gaacagtgag 1081 aggattcttt tagaagactc ttcttctgtt aattattggt tcccaaagat gaaagacatg 1141 gtcatcatac cgctttttga catttcttta cagaatgaaa ataagcgtat gtccagaagg 1201 gaagtaatgg ttagtaagga ttttgtctat actgttttaa accatatcag aacataccag 1261 tcaaaggcct tgacgtacgc caatgttttg tcattcgtcg aatctataag atcacgagtg 1321 attatcaatg gcgtaacggc gaggtctgaa tgggatgtag ataaggcctt attacagtca 1381 ctgtcgatga ctttcttcct tcagaccaaa ctggctgtgc ttaaagatga actcctaatt 1441 aataagttcc aagttcacag taagtcacta acggaatatg tatgggatga agtaacatcg 1501 gctttccatg gatgttttcc atctattaag gaaagattga tcaaacagaa tctcatttca 1561 gtttctgaga aagcattgga gatcaaagtt cctgatctgt acgttacctt ccatgacagg 1621 ttggtgagag agtacagatg ttcagtcgat atgcccacag tggatgtgag gaaaagcctc 1681 gaaaaggctg aactgatgta caatgcgctt tcggaaatct cagtgctcaa ggatagtgac 1741 aagtttgatg ttaatgtttt ttcccagatg tgtgataact taggtgttga tccacttgta 1801 gcagcaaagg tgatggtggc ggttgtgtca aacgagagtg ggctcacgct tacttttgaa 1861 agaccgactg aagccaatgt agctctggca ttacaaccaa cgattgcatc caaggaaagt 1921 ggggttctga agatcgtttc ctctgatgta ggagagtcgt caatcaaaga ggtggtccaa 1981 aagtcagaga tttcaatgct agggcttact ggagatacta tatcagatga attccaaagg 2041 tcaaccgaaa tcgaatcatt gcagcaattc cacatggcat caacggacgc gattattcgc 2101 aaacagatgc atgcgatggt ctatacaggt ccgctgaaag ttcaacagtg taagaattat 2161 ttagacaacc tggtggcatc gctctctgct gcggtatcaa atctgaagaa gatcataaga 2221 gataccgctg caatagatct cgaaactagg gaaaaatttg gagtttttga tgtatgttct 2281 gggaagtggc tagtgaaacc ctcgacaaag ggtcatgctt ggggagttgt gatggactca 2341 aactacaagt gtttcgttgc acttttaacc tatgatggcg ataacatagt gtgcggcgag 2401 acatggagga gagtggctgt gagctctgaa tcgatggtgt attcggacat ggggaagatc 2461 agggcgatac gctctgtgtt aagagacgga gagccgctta tcagtagtgc aagagtaaca 2521 ttggtggatg gtgtacccgg atgtggaaaa acaaaggaga tccttgctag agtcaatctt 2581 gacgaggact taattttagt accggggaag caagccgctg agatgataag aaggagggcc 2641 aacagttctg gattgatagt cgcaacaaaa gacaatgtta aaactgttga ttccttcttg 2701 atgaattatg gaagaggacg ctgtcaatac aaaaggctat ttgtggatga aggtcttatg 2761 ttgcaccctg gttgtgtcaa ttttctagtg gcgatgtctc tgtgtgacga agcatttatt 2821 tacggagaca cccaacagat accttacatt aacagagttg caaatttccc ataccctaag 2881 catttgagtc aactagaggt ggatgatgtg gagacccgga gaactacact tcggtgccct 2941 gcagatataa cacacttttt gaatcagcgt tatgagggtc aagttatgtg cacttcaact 3001 gttgtcagat ccgtggcaca agaggtggta caaggtgcag ctgtcatgaa cccggtgtcc 3061 aaaccgttga aaggaaaggt gataaccttc acacaagctg ataaatccat gttactttct 3121 aggggttata ccgatgtgaa tactgtgcat gaggttcaag gagagacata tgaggatgtg 3181 tcgttggtaa gattaactcc gacacctgtc gggatcatct caaaggagag ccctcatttg 3241 ttagttgcac tttcaagaca cacgaggtca gttaaatact atactgtggt ggtagatgct 3301 gtagtatctg ttcttagaga tttagaatgt gtaagtagtt accttctaga tatgtataag 3361 gtagatgtat ctgtccaata gcaattacag gttgaagcag tgtataaagg tgaaaactta 3421 ttcgttgcag ctccaaaaac cggagatatt tctgacatgc agttttatta cgacaaatgt 3481 ttgcctggga acagtacagt cctcaatgag tacgatgctg taaccatgca aattcgtgat 3541 aataaactaa atgttaagga ttgtgttcta gatatgtcaa agtcagtacc gttaccgaga 3601 gaaactggaa agtctctaaa accggtaatc cgtacagctg ctgaaatgcc tagaaaaccg 3661 ggattattgg aaaatttggt cgctatggtc aagagaaatt tcaattctcc agagctcagc 3721 ggaatagttg acattgaaga cactgcttct tatgtagtag ataagttttt tgatgcatat 3781 ttacttaaag aaaagaaaaa accaaaagat ttacctttgc tttctagggc tagtttggaa 3841 agatggatag gaaaacagga aaagtcaaca attggtcaac tagccgattt tgactttatt 3901 gatcttcctg ctgtggacca gtacagacac atgattaagc agcaaccaaa acaacgtttg 3961 gatcttacaa ttcaaacgga gtatccggca ctgcaaacaa ttgtgtatca cagtaagaag 4021 atcaatgctc tctttggccc tgtattctct gagctaacaa gacaactgct tgacatgatc 4081 gatagttcga gatttatgtt ctatacaaga aagactccta gccaaatcga agaatttttc 4141 tcagatttgg attcggaggt tcctatggat atactagagc ttgacatctc taagtatgat 4201 aaatctcaag gcgaatttca ctgtgcagtt gaatatgaaa tttggagaag gttaggcctc 4261 gacgattttc tcgctgaggt atggaaacat ggtcaccgga agactacttt aaaggactat 4321 actgccggaa tcaaagcttg cctgtggtat caaaggaaaa gtggtgacgt aacaacattc 4381 attggtaata ctgtgattat agcggcatgc ttatcttcaa tgctaccaat ggattcattg 4441 attaaaggag ctttctgtgg agatgacagt atcttgtact tcccaaaggg gtctcaattt 4501 cctgatgtgc aacaatgtgc aaacttaatg tggaattttg aggctaagct tttcagaaag 4561 aagtacgggt acttttgtgg aaggtacatc atccatcatg atagaggctg tattgtgtac 4621 tatgatcctc ttaaattgat ctctaagctt ggtgcaaaac acatcaagga tagggaacac 4681 ttagaggaat ttagaacgtc tctttgtgat gttgctggtt cgttgaacaa ttgtgcgtat 4741 tacacacaat tggacgaagc tgtgagtgag gttataaaga ccgcaccccc gggttcgttt 4801 gtttataaat cattagttaa gtttttgtgc gataaaaggt tgtttcaatc actcttctta 4861 gattgagatg gctcttgtag tcaaagatga cgttaagatc tctgagttta tcaatttgtc 4921 tacgtccgag aagtttcttc cggccgctat gacgtctgtc aagtcggtaa gagtttcaaa 4981 gatagacaaa gtgatcgcaa ctgagaacga ttcgttatct gatgttgact tgctcaaggg 5041 tgttaaattg atcgaagaag gttatgtgtg tttagctggg ttagtggtgt caggtgagtg 5101 gaatttgccc gataactgtc gtggtggtgt cagtgtatgt ttggttgata agagaatgct 5161 tagacacgac gaagctacgc tcggttcata taaaactggt gctgctaaga agagatttgc 5221 gttcaagctt atcccgaact acagtgttac aacagccgat gctaaaagaa atatctggca 5281 agttcttgtc aatattaaag gtgtggcaat ggagaagggt ttttgcccat tatccttaga 5341 atttgtgtcg gtgtgtattg tgcataaaac aaatataaaa cttggactga gggagaaaat 5401 tacaaatgtc tcagacggag gacccgtcga acttacagaa gaagttgttg atgagttcgt 5461 cgaatcagtt cctatggctg agaggttacg taaatttcga ggacggtcca acaaaaagag 5521 taataaattt gtagagaaaa ataataataa aagaggtgat aagggtggta aattgttaaa 5581 gaagattgat aatgaaactg agacggagtc atctgacgcc gaatcatctt cgtattaatc 5641 atgtcttaca caatttcgaa tccgaatcaa ttagtatatc tagcttctgt atgggctgac 5701 ccaacagaat tgcttaattt atgtactagt gctttgggta atcagtttca aacacaacag 5761 gccagaacta ctgttcaaca acaattctct gatgtgtgga agactgttcc tgctactaat 5821 attaggtttc ctaatgctgg ttttaaagtt taccgataca atgctgttct tgattctctc 5881 ataacagctt tgttaggaag ttttgatact agaaacagga tcatagaagt agaaaatccg 5941 cagaatccaa ctaccgccga aacgcttgac gcaactaggc gtgtggacga tgcaactgtg 6001 gccattaggt ccggtataaa taacttaatg aacgagttag ttcgtggcac gggaatgtac 6061 aatcaagctc aatttgagag cgtgagtgga ctgacctggg ctacaactgc gacttctagt 6121 taagtaataa aaggagtcat gacttaattg tccgtggtgg atacgataat ccatagtgtt 6181 tttccctcca cttaaatcga agggtagtcg tctggatgaa acacaagatt tacacgtgtg 6241 acgtgtatat gtgggc //