LOCUS       MN488622                 212 bp    RNA     linear   ENV 12-OCT-2020
DEFINITION  MAG: Human coronavirus HKU1 clone 4310700657_seq1 nucleocapsid
            protein (N) gene, partial cds.
ACCESSION   MN488622
VERSION     MN488622.1
DBLINK      BioProject: PRJNA562998
            BioSample: SAMN12661036
            Sequence Read Archive: SRR10070283
KEYWORDS    ENV; Metagenome Assembled Genome; MAG.
SOURCE      Human coronavirus HKU1 (upper respiratory tract metagenome)
  ORGANISM  Human coronavirus HKU1
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae;
            Betacoronavirus; Embecovirus; Betacoronavirus hongkongense.
REFERENCE   1  (bases 1 to 212)
  AUTHORS   Janssens,T.K.S., Zhan,S.H., Overduin,P., Alamouti,S.M., Kwok,B.S.,
            Schmitz,D., Qadir,M.A. and Meijer,A.
  TITLE     A target hybridization-based next-generation sequencing assay
            enhances surveillance of seasonal respiratory pathogens: a
            retrospective assessment
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 212)
  AUTHORS   Janssens,T.K.S., Zhan,S.H., Overduin,P., Alamouti,S.M., Kwok,B.S.,
            Schmitz,D., Qadir,M.A. and Meijer,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-SEP-2019) Centre for Infectious Disease Research,
            Diagnostics and Screening (IDS) Department of Endemic and Emerging
            Viruses (EEV), RIVM, Antonie van Leeuwenhoeklaan 9, Bilthoven
            3721MA, Netherlands
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: in house assembler v. December 2018
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..212
                     /organism="Human coronavirus HKU1"
                     /mol_type="genomic RNA"
                     /isolation_source="nasopharyngeal swab"
                     /host="Homo sapiens sample 4310700657"
                     /db_xref="taxon:290028"
                     /clone="4310700657_seq1"
                     /environmental_sample
                     /geo_loc_name="Netherlands"
                     /lat_lon="52.36 N 4.83 E"
                     /collection_date="05-Nov-2007"
                     /metagenome_source="upper respiratory tract metagenome"
                     /note="Probe capture/Targeted metagenomics"
     gene            1..>212
                     /gene="N"
     CDS             1..>212
                     /gene="N"
                     /codon_start=1
                     /product="nucleocapsid protein"
                     /protein_id="QHB49086.1"
                     /translation="MSYTPGHYAGSRSSSGNRSGILKKTSWADQSERNYQTFNRGRKT
                     QPKFTVSTQPQGNTIPHYSWFSGITQ"
BASE COUNT           67 a           54 c           35 g           56 t
ORIGIN      
        1 atgtcttata ctcccggtca ttatgctgga agtagaagct cctctggaaa tcgttcagga
       61 atcctcaaga aaacttcttg ggctgaccaa tctgagcgaa attaccaaac ctttaataga
      121 ggcagaaaaa cccaacctaa attcactgtg tctactcaac cacaaggaaa tactatccca
      181 cattattcct ggttctccgg gatcactcaa tt
//