LOCUS ML170272 72253 bp DNA linear CON 20-MAR-2019 DEFINITION Rickenella mellea strain SZMC22713 unplaced genomic scaffold BD410scaffold_117, whole genome shotgun sequence. ACCESSION ML170272 QMKR01000000 VERSION ML170272.1 DBLINK BioProject: PRJNA334780 BioSample: SAMN05445462 KEYWORDS WGS. SOURCE Rickenella mellea ORGANISM Rickenella mellea Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Hymenochaetales; Rickenellaceae; Rickenella. REFERENCE 1 (bases 1 to 72253) AUTHORS Krizsan,K., Almasi,E., Merenyi,Z., Sahu,N., Viragh,M., Koszo,T., Mondo,S., Kiss,B., Balint,B., Kues,U., Barry,K., Hegedus,J.C., Henrissat,B., Johnson,J., Lipzen,A., Ohm,R., Nagy,I., Pangilinan,J., Yan,J., Xiong,Y., Grigoriev,I.V., Hibbett,D.S. and Nagy,L.G. CONSRTM DOE Joint Genome Institute TITLE A transcriptomic atlas of mushroom development highlights an independent origin of complex multicellularity JOURNAL Unpublished REFERENCE 2 (bases 1 to 72253) AUTHORS Mondo,S.J., Krizsan,K., Henrissat,B., Lipzen,A., Pangilinan,J., Xiong,Y., Grigoriev,I.V., Hibbett,D.S., Nagy,L.G., Nordberg,H.P., Cantor,M.N. and Hua,S.X. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (15-JUN-2018) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://genome.jgi.doe.gov/Ricmel1 JGI Project ID: 1075324 The DNA was provided by Krisztina Krizsan (krizsank@gmail.com) The strain is available from CBS-KNAW Culture Collection Contacts: Laszlo G. Nagy (lnagy@fungenomelab.com) Kerrie W. Barry (kwbarry@lbl.gov) Assembly and annotation done by JGI. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##Metadata-START## Organism Display Name :: Rickenella mellea CBS 579.87 GOLD Stamp ID :: Gp0034227 ##Metadata-END## ##Genome-Assembly-Data-START## Assembly Method :: AllPathsLG v. R49403 Assembly Name :: Ricmel1 Genome Coverage :: 90.4x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..72253 /organism="Rickenella mellea" /mol_type="genomic DNA" /submitter_seqid="BD410scaffold_117" /strain="SZMC22713" /db_xref="taxon:50990" /chromosome="Unknown" gene complement(1057..2159) /locus_tag="BD410DRAFT_796310" mRNA complement(join(1057..1237,1291..1786,1838..1920, 1981..2159)) /locus_tag="BD410DRAFT_796310" /product="sirtuin" CDS complement(join(1085..1237,1291..1786,1838..1920, 1981..2139)) /locus_tag="BD410DRAFT_796310" /note="GO_component: GO:5677 - chromatin silencing complex; GO_function: GO:3677; zinc ion binding - DNA binding [Evidence 17136; NAD binding] [GO Ref 8270; NAD-dependent histone deacetylase activity]; GO_process: GO:6342; regulation of transcription, DNA-dependent - chromatin silencing [Evidence 6476] [GO Ref 6355; protein amino acid deacetylation]" /codon_start=1 /product="sirtuin" /protein_id="TDL15508.1" /db_xref="InterPro:IPR003000" /db_xref="JGIDB:Ricmel1_796310" /translation="MPSASQTTASSDIQSFRDVLASSKSIIILAGAGLSAGSGIQTYR GGGGLWNTQDADYLATPQGFKENPSRVWQFYHHRREICLQSQPNAAHRALASLSKLST LSRIAPSLKETSSPPLLITQNIDSLSLRALDGLPPAVKTAAEGRLLEMHGCIFSTRCT SCQHTQCTYTSPLCSALLDTKERDIPISELPRCGGENWSGSNRYGKCGGLLRPDVVWF GEIPNHMGEIAQRLNWCDLLLVVGTSSTVYPAAGFAATVKARGGKVAVFDIENPKDRV GADFIFLGPCEETLPEVLGV" gene <3416..>4865 /locus_tag="BD410DRAFT_732609" mRNA join(<3416..3661,3717..3896,3950..4024,4076..4297, 4347..>4865) /locus_tag="BD410DRAFT_732609" /product="kinase-like protein" CDS join(<3416..3661,3717..3896,3950..4024,4076..4297, 4347..4865) /locus_tag="BD410DRAFT_732609" /note="GO_function: GO:4672; ATP binding - protein kinase activity [GO Ref 5524]; GO_process: GO:6468 - protein amino acid phosphorylation" /codon_start=1 /product="kinase-like protein" /protein_id="TDL15509.1" /db_xref="InterPro:IPR017442" /db_xref="JGIDB:Ricmel1_732609" /translation="ILDQGNLSANDQPRVARTLTRLAKSSACLPDCLMLSKVKRTGRD PVAGGGFADVWFGYFDSTPVAIKALRIYEHSDQEKALKEFSHEAIIWRLLRHPNILPF YGVFGGDEHFDRLCLVSPWMYAGNVIKYLGKNPESDRFALLGDVVNGLAYLHGFQPAI IHGDLKGANIFITSGLTACLGDFGLSRFRDSQESTLGATTRNTAGTLRWQAPEIFDSH EDGRTNCPSQESDIYSFGCVCLELMTGKPPFTEIRGDGAVVKAIMNKQTPKRPAEDLL KYGFDDDLWDLMEKCWNYAPTQRPEIGLLLEYFNRRRSFSVHLNSNGKLSRETRATLD QYGFPDDHVQAITTMFRLTLGDNTPQQYIETQKDNFKPYLRQRYGPGEIFLDDPKAIP PNSEDDILFPERHSTSYLVKN" gene <4874..>6606 /locus_tag="BD410DRAFT_732608" mRNA join(<4874..5099,5155..5320,5372..5525,5576..5839, 5895..5984,6034..6250,6299..>6606) /locus_tag="BD410DRAFT_732608" /product="ras GEF" CDS join(4874..5099,5155..5320,5372..5525,5576..5839, 5895..5984,6034..6250,6299..6606) /locus_tag="BD410DRAFT_732608" /note="GO_component: GO:5622 - intracellular; GO_function: GO:5085 - guanyl-nucleotide exchange factor activity; GO_process: GO:7264; regulation of small GTPase mediated signal transduction - small GTPase mediated signal transduction [GO Ref 51056]" /codon_start=1 /product="ras GEF" /protein_id="TDL15510.1" /db_xref="InterPro:IPR000651" /db_xref="InterPro:IPR001895" /db_xref="JGIDB:Ricmel1_732608" /translation="MYRVIGRSSPRAAKIRQLLGDDAPERYIDNANANSKPWYLRSTY GQDEILINPDGGIRGGTLAALVERLTTHEYGDPIFIKTFLMTYKSFTNLNELFDLLVA RFNIQAPDGLKPDELEEWKKSKQTIVRVRVINTFKTMIADSDVLEKDDNYILERMKGF AFNPDVAQLNARKPLLSLIERAQAGGDSVVKMAAVSSQFGPQSIQPKVSSSRKLKFLD VDALEMARQLTILESRVYNKIRAVECLQRARESNKVGEHHDHIADVIQVTNKIAYWVT NTVLSKEDSRKRAAIVKHFISIADRCRTLHNFSSMFAIISGLNSPPIRRLKRTWEQVN SKFMSQLGTCEMTLDSGKKFSNYRSTLAQVNPPCIPFIGIYLVDLNIIQSGSKDYLQL NVINFDKRQKAAEIIHEIKHWQSKQFDLLPLPAVLAFIEVSLESFNGTTNWDDYFWNT SLEREPRDRKDKKMARLLQKNGFL" assembly_gap 7258..8057 /estimated_length=800 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <10955..>11837 /locus_tag="BD410DRAFT_732583" mRNA join(<10955..11145,11204..>11837) /locus_tag="BD410DRAFT_732583" /product="hypothetical protein" CDS join(<10955..11145,11204..11837) /locus_tag="BD410DRAFT_732583" /note="expressed protein" /codon_start=1 /product="hypothetical protein" /protein_id="TDL15511.1" /db_xref="JGIDB:Ricmel1_732583" /translation="FINDATGLKLDIRGDLDSCTIRVHATQILLDGRRVVLLDTPGFG HSSLSDSEVLRLTAEYLANLYRKEVKLSGVLYMQRISEPQSERQIRRNFKIFTELCGH ANFDHIVVVTTRWSNVDLIFGSGRENELKTGVFKSFLHAGGKIVRHDQTVGSAKEILR HVITQDVRVLAIQTQMVDGGKDILATDAGLEVSSDVVVTKPRGFGSWLRKLWQGVGVL RIRSQIVDPGTDSPAAGTGLEVSMPRPRRVEMSLTANGAELLATDGLEVSRNVEVR" gene <12700..>13833 /locus_tag="BD410DRAFT_702693" mRNA join(<12700..12945,13000..13179,13238..13597, 13642..>13833) /locus_tag="BD410DRAFT_702693" /product="kinase-like protein" CDS join(<12700..12945,13000..13179,13238..13597, 13642..>13833) /locus_tag="BD410DRAFT_702693" /note="GO_function: GO:4672; ATP binding - protein kinase activity [GO Ref 5524]; GO_process: GO:6468 - protein amino acid phosphorylation" /codon_start=1 /product="kinase-like protein" /protein_id="TDL15512.1" /db_xref="InterPro:IPR017442" /db_xref="JGIDB:Ricmel1_702693" /translation="ILDRGSLSPNDQTRFARALSRLAKSSACLPDCLMLSGVKRAGMD PVAGGGFADVWIGDFDSTPVALKALRIYKHSDQEKAFREFSHEAIIWRLLRHPNILPF YGVFRGDEHFDRLCLISPWMDAGNVVKYIAKNPDSDRFTLLGDVVNGLAYLHGFQPAI IHGDLKGVSFSCRQSSLYLTSVMYANIFVTSGPTACLGDFGISRFRDSQESTLGTTTG NTTGTLQWQAPELFDSHADGTTNRPSQESDIYSFGCVSLEASHLLMTGRPQFMEIRGD GAVMKAVMNKQTPLRPTEDLLKYGLDDDLWALMEECWNFAPTQRPKLGYI" gene complement(15530..16091) /locus_tag="BD410DRAFT_796318" mRNA complement(join(15530..15867,15919..16091)) /locus_tag="BD410DRAFT_796318" /product="hypothetical protein" CDS complement(join(15616..15867,15919..15942)) /locus_tag="BD410DRAFT_796318" /note="expressed protein" /codon_start=1 /product="hypothetical protein" /protein_id="TDL15513.1" /db_xref="JGIDB:Ricmel1_796318" /translation="MMDDTQAQTSRTPSLTPSHGCEILQSLRPHLHSSDSSNTFLQAI LQHCESFIAFPAAHRGCAAVFTELAFQLEMKAQESGDDGDFACSYGA" gene 16886..18648 /locus_tag="BD410DRAFT_105317" mRNA join(16886..17070,17146..17340,17413..17432,17485..17603, 17660..17693,17747..17928,17986..18358,18413..18450, 18512..18648) /locus_tag="BD410DRAFT_105317" /product="hypothetical protein" CDS join(17271..17340,17413..17432,17485..17603,17660..17693, 17747..17928,17986..18358,18413..18450,18512..18548) /locus_tag="BD410DRAFT_105317" /note="expressed protein" /codon_start=1 /product="hypothetical protein" /protein_id="TDL15514.1" /db_xref="JGIDB:Ricmel1_105317" /translation="MGNRALSRDPGSGLLRVCSLPFIYGKEQTPVTFCTEETNRENWW RFQRIPDGNDDQIASRADADPPRYVAVVGATVSGISSFVNDAAGSKLDAGDDFNSRSD RVHATQILLDGRPVVLLEISGFGHSSMSDIEPLHSMADYLSRKKIELTGILYMQSISI ANVVRSPLRSVAMFRKLCEHIWIVTTDWHDVESRVGRVREQEIMDVFQPLVRARGRMV RHDQAGRSARAILRRVLEKDVIVLRIQAELVDVCKDLPVTSAGAEISSALRRALATGE MVSKLRDLILPLNF" gene <19193..>20304 /locus_tag="BD410DRAFT_683672" mRNA join(<19193..19438,19494..19673,19726..19800,19851..20072, 20122..>20304) /locus_tag="BD410DRAFT_683672" /product="kinase-like protein" CDS join(<19193..19438,19494..19673,19726..19800,19851..20072, 20122..>20304) /locus_tag="BD410DRAFT_683672" /note="GO_function: GO:4672; ATP binding - protein kinase activity [GO Ref 5524]; GO_process: GO:6468 - protein amino acid phosphorylation" /codon_start=1 /product="kinase-like protein" /protein_id="TDL15515.1" /db_xref="InterPro:IPR017442" /db_xref="JGIDB:Ricmel1_683672" /translation="ILDGGNLSAHDRPRFARTLTRLAKSSACLPDCLMLSGVKKTGRD PVAGGGFADVWTGYFHSTPVALKALRIYKRSDQEKALREFSHEATIWRLLRHTNILMF YGVFKGDENFDRLCLVSPWMDAGNVIGYLEKNPDSDRFALLGDVVNGLAYLHHFQPTI IHGDLKGANIFVTSGLIACLGDFGLSRFRDSQESTIGATTGYMAGTLRWQAPELFESR EDGRTNRLSQESDIYSFGCVCLELMTGRPPFMEVRGDGAVMKAITNKQTPQRPAEVFL KYGLDDDLWALMEKCWNYVPGQRPEM" gene <20582..22532 /locus_tag="BD410DRAFT_853758" mRNA join(<20582..20888,20948..21113,21166..21319,21369..21632, 21687..21776,21830..22046,22103..22532) /locus_tag="BD410DRAFT_853758" /product="ras GEF" CDS join(20582..20888,20948..21113,21166..21319,21369..21632, 21687..21776,21830..22046,22103..22383) /locus_tag="BD410DRAFT_853758" /note="GO_component: GO:5622 - intracellular; GO_function: GO:5085 - guanyl-nucleotide exchange factor activity; GO_process: GO:7264; regulation of small GTPase mediated signal transduction - small GTPase mediated signal transduction [GO Ref 51056]" /codon_start=1 /product="ras GEF" /protein_id="TDL15516.1" /db_xref="InterPro:IPR000651" /db_xref="InterPro:IPR001895" /db_xref="JGIDB:Ricmel1_853758" /translation="MALSRQNVAQANFNLTPRGVCSSPSTLSFFIYHVSEQPLSGAAT IFRKLRAPEYIATATDNLKEWYLRPTYCRDEILTDQDGGIRGGTLLALIELLTTHEYR DPIFIKTFFLTYKSFTNLNELFDLLVARFNIQAPESLDPYELEEWICVKQTVVRFHVI NSFKTIVTNSEEFHKDDFYILERMKDFCVSPDAVKLRASKHLLDLIERAQAGGDSLVQ MTAVSSLAPTPPIQPKVSRFLNLQSLEVDALEMARQLTILESRFYNKIRAAECLKRAL EPNRVGEHHDHIADVIQVSNMITCWVANTVLQQKDSRRRARTAKHFILIADHCRTLNN FSTMVAIMSCLNSPPIRRLKRTWDHFDSKCMSQLGTCEMNLDSSNNFCNYRSTLAKIN PPCIPFIGVYLIDLAIIQNGSKDYLQPDVINFGKLQKTAEVVHEIKHWQSTKFNLTPI PVVLDFIEESLASFHDARDWNEYFWNMSLERESDAIGQENET" gene complement(<22550..>23199) /locus_tag="BD410DRAFT_845125" mRNA complement(join(<22550..22834,22886..22975,23029..23100, 23158..>23199)) /locus_tag="BD410DRAFT_845125" /product="hypothetical protein" CDS complement(join(22550..22834,22886..22975,23029..23100, 23158..23199)) /locus_tag="BD410DRAFT_845125" /note="expressed protein" /codon_start=1 /product="hypothetical protein" /protein_id="TDL15517.1" /db_xref="JGIDB:Ricmel1_845125" /translation="MQHVSGSAGSAISNDDDQICQMLGSLNLQAWTETTNCISVKTSL ASMAIEQPGSPLPLVHMMDDTQAQSSRSPSPPPSHGCEILQSLRPHLHSSDSSNTFLQ AILQHRESFIAFPAAHRGCAAVFTELAFQLEMKAQESGEDGDLHAAMALDREAWLVSG WN" gene complement(24441..31663) /locus_tag="BD410DRAFT_902546" mRNA complement(join(24441..24662,24825..24836,24892..24921, 24969..25043,25167..25175,25233..28668,28717..28777, 28836..28883,28930..28951,29006..29085,29142..29319, 29376..29622,29676..29999,30053..30301,30851..30921, 30981..31179,31233..31663)) /locus_tag="BD410DRAFT_902546" /product="beta and beta-prime subunits of DNA dependent RNA-polymerase" CDS complement(join(24562..24662,24825..24836,24892..24921, 24969..25043,25167..25175,25233..28668,28717..28777, 28836..28883,28930..28951,29006..29085,29142..29319, 29376..29622,29676..29999,30053..30301,30851..30921, 30981..31179,31233..31319)) /locus_tag="BD410DRAFT_902546" /note="GO_component: GO:5665 - DNA-directed RNA polymerase II, core complex; GO_function: GO:3677; DNA-directed RNA polymerase activity - DNA binding [GO Ref 3899]; GO_process: GO:6350; transcription from RNA polymerase II promoter - transcription [GO Ref 6366]" /codon_start=1 /product="beta and beta-prime subunits of DNA dependent RNA-polymerase" /protein_id="TDL15518.1" /db_xref="InterPro:IPR000684" /db_xref="InterPro:IPR000722" /db_xref="InterPro:IPR007066" /db_xref="InterPro:IPR007073" /db_xref="InterPro:IPR007075" /db_xref="InterPro:IPR007080" /db_xref="InterPro:IPR007081" /db_xref="InterPro:IPR007083" /db_xref="JGIDB:Ricmel1_902546" /translation="MLGHQFAHSAAPLRKVKEVQFGIMSPEEIKAYSVAKIEHPEVMD EATHKPKMSGLMDPRMGTIDRNFKCQTCGEGMAECPGHFGHIELARPVFHPGFFVKVK KILECICINCGRLKADISDPAFAEKIRLYRTPKPRMAAVWNYCKSKTICVPDDPKEEG DGGEHVEDPKKGHGGCGHVQPQIRKEGLKLFLQYKKSKDEDEEFKSAQPDKRQFSAAD AYNVLRKINDEDLTLLGLSEEYARPDWMILTVLPVPPPPVRPSIAVDGGAMRSEDDLT YKLGDIIKASANVRRCEEEGAPAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSGRP VKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPKSIAMNLTYPER VTPYNIAYLQELVRNGPTNYPGARYVVRDTGERIDLRYNKRADAFLQYGWIVERHLKD GDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEE TRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDSFLDWVQVQNILMWVH GWDGTIPTPAIIKPKALWTGKQIISMTIPRGINIHRGSDPPSSNPVSDDGVHIENGEL LYGVLEKKTVGASKGGLVHIVFREKGPEATRDLFTGLQRVVDFWLFHNGFSIGIGDTI AGKKVMEVITGTIQEHKDKVKQVINDATNDRLKAEPGMTIRESFESLVERELNRARDT SGQYAQKNLKDDNNVKQMVVAGSKGTFINISQMSVCVGQQSVEGKRIPFGFRHRTLPH FAKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAIKTAETGYIQRRLVKA LEDVMVCYDGTVRNSLGDVIQFIYGEDGMDAAYIEEQSIRTYDLNDKEFDHKFRVDVT DPSGGFLPGALQVGIDDSSLELQQKLDIEYEALCADRRFLRDFVFPIHNMTMEHALPV NLLRVIQNASQIFHIDRRKPSDLEPAYIIDSVQQLGERLIVVRGEDALSREAQQNATL NFRMHLRATFATRRVLEEFHLTREAFDWVLGEIETKFNQSVAHPGEMCGTLAAQSIGE PATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTVYLNPDIAGDKVLAK TVQTELAYTSLRTVTAAVEIYYDPDPTTTIIEEDREFVDAFFAIPDEDIEAKIHLQSP WLLRLELDRSKMLDRKMSMNYVANQIAGNFQADLFVIWSEDNAEKLVIRCRVLGGTDK DEDGVGSVEEDTFLRQLELTMLNSVDLRGVKGIDRVFLVNFDKAIITDSGSIAPKQVK EWVLETDGVNLKTVMCINGVDWRRTYSNSCVEIFNVLGIEAARGAIMKELRRVIEFDG SKVNYRHLALLCDLMTHRGTLTAITRHGINRADTGALMRCSFEETVEILMEAAAVGEK DDCHGIAENVMFGQMAPMGTGSFDVALDMDILKDVIVDHRLPVQNMLAAHVDGGMTPG QVAMTPYDSNSPMWSSDVANFKGEQAAFSPLAVNGGEDPSNFSYSMFGQSPRHMGAMS PGGGYSPSSPNAYSPTSPYVQSPFGGATSPFGTSPYATSPFYDRTRSATSPTYSPTSP ALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRY SPTPVQHSPSSPKYSPTSPQSPSSPKYSPTSPAYSPASPTYCAPGGSSECVERQQELQ PVAFMGLRLVSFHSRV" assembly_gap 24663..24812 /estimated_length=150 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<32666..>35813) /locus_tag="BD410DRAFT_845127" mRNA complement(join(<32666..32779,32837..32962,33019..33030, 33088..33132,33181..33855,33903..34124,34174..34248, 34300..34479,34534..34779,34830..35000,35051..35200, 35248..35280,35334..35540,35573..35601,35657..>35813)) /locus_tag="BD410DRAFT_845127" /product="kinase-like protein" CDS complement(join(32666..32779,32837..32962,33019..33030, 33088..33132,33181..33855,33903..34124,34174..34248, 34300..34479,34534..34779,34830..35000,35051..35200, 35248..35280,35334..35540,35573..35601,35657..35813)) /locus_tag="BD410DRAFT_845127" /note="GO_function: GO:4672; ATP binding - protein kinase activity [GO Ref 5524]; GO_process: GO:6468 - protein amino acid phosphorylation" /codon_start=1 /product="kinase-like protein" /protein_id="TDL15519.1" /db_xref="InterPro:IPR017442" /db_xref="JGIDB:Ricmel1_845127" /translation="MSERLTEDRIDHDFFRNAIQTHDFANSSLLTWSLQADRIVNEGR SVAGNDDIVPDALVTGEMDFDVVGHSFFGNDRQMKDHITSIDDLGDKNTSETLWLKDS TDGNAVLRFLDGPQRTECVKMVSSAKIYQRLLAYVYVQLKTSTTPRSARHAYDSLCSA VDTWGVWDHFQWLANHHTVRLTLWDILNQGTASGYGQHAHCFNLQQLLNSDFIAIQSQ MLIVLNSRKRKGDFYGVCSADPVPILNLLQTIIDQGNLSTNHRSRFVRTLTHLTKSFA RLPDCLMLSGVKRSGKDPVAGGGFADIWTGYFDSNSVAIKALRIYERSDQEKALREFS HEAIIWRLLRHPNILPFYGVFRGDEHFDRICLVSPWMEAGNVTKYLAKNPDSDRFALL GDVVNGLSYLHDFQPAIIHGDLKGANIFVTSRLTACLGDFGLSRFRDSQESTLGATTG TTAGTLRWQSHELFDSREDGRTNRPSQESDIYSFGCVCLELMTGKPPFSEIRGDGAVV KAIMNKQTPQRPAEDLLKYGFDDDLWSLMEKCWSYTPSQRPKMGLLLEYFNRRRGSSV RLNSIKKLSHGTRASLDQYGFPDGHVRTVALIAGLTNTRGQKEELQEIHQARRSFRKP PNPAVDATQFATTTADLQTGDGRHNPIHPYLHAPERYIGSAKDNSKEWYLRSRYGRDD IHINPDGDIMGELDLLRKKLVDGEMKTARTIHELNKEVHELESLIEAKIYREDNLEQE IERLKEELTRGKSSQEGLADLRPRRTSSSHRTASGEDDGNHSTGQTNKPSELLCGDYE SHGHIAAECHSLEVF" gene complement(<37391..>39179) /locus_tag="BD410DRAFT_732601" mRNA complement(join(<37391..37647,37702..37918,37972..38061, 38116..38379,38432..38585,38638..38803,38864..>39179)) /locus_tag="BD410DRAFT_732601" /product="ras GEF" CDS complement(join(37391..37647,37702..37918,37972..38061, 38116..38379,38432..38585,38638..38803,38864..39179)) /locus_tag="BD410DRAFT_732601" /note="GO_component: GO:5622 - intracellular; GO_function: GO:5085 - guanyl-nucleotide exchange factor activity; GO_process: GO:7264; regulation of small GTPase mediated signal transduction - small GTPase mediated signal transduction [GO Ref 51056]" /codon_start=1 /product="ras GEF" /protein_id="TDL15520.1" /db_xref="InterPro:IPR000651" /db_xref="InterPro:IPR001895" /db_xref="JGIDB:Ricmel1_732601" /translation="MNGKEEVQERHHTRRSNLKPPNPAVDATQFATTKDDLHTFDDWR NTIHPYLHAPERYIGTGHDSTKEWYLGPTYGRDETLINPDGGIIAGTLQAMVELLTTH DHRDPSFIKTFLSTYKSFTNLDQLFNLLLARFNIQSPEGLYPFELEEWIRLKRTPVRS RVIAAFQTMVTDGEVLEKDDYSILERMKDFLLTTDAAELPASKRLFDLIERAQAGRDP NVKMTPVSSQIPPRTIPPKVSWFRKLQFLDIDGLEMAKQLTILESRLYNKVRTIECLL RARESNKGGEHRDHIHDVIQMTNKISYWVTNTILSRKDPRNRATVFEHFVSVANHCRI LNNFSSMFAIIGGLNSPPIRRLTRTWDNVDSECMPDLEPCEALLRSYQKFSNYRSTLA KVSPPCVPFIGVYLTDLTVIQHDIKDHLQPNMISFKNCQGIAEVLREIKHWQSAQFNL RPLPVVLRFIEESLAVFSDGTNWDDYFWNASLEREPT" gene complement(<39327..>40457) /locus_tag="BD410DRAFT_703365" mRNA complement(join(<39327..39521,39578..39799,39846..39923, 39977..40156,40212..>40457)) /locus_tag="BD410DRAFT_703365" /product="kinase-like protein" CDS complement(join(<39327..39521,39578..39799,39846..39923, 39977..40156,40212..>40457)) /locus_tag="BD410DRAFT_703365" /note="GO_function: GO:4672; ATP binding - protein kinase activity [GO Ref 5524]; GO_process: GO:6468 - protein amino acid phosphorylation" /codon_start=1 /product="kinase-like protein" /protein_id="TDL15521.1" /db_xref="InterPro:IPR017442" /db_xref="JGIDB:Ricmel1_703365" /translation="ILDRGDLSTNDQSRIVRALTHLAKSSACLPDSLMLSGVKRTGRD PVAGGGFADVWTGYLDSTPVAIKALRIYERSDQERALRNFSHEAVIWQLLRHPNILPF YGVFGGDEHFDRLCLVSPWMEAGNVIKYLAKNPDSDRFALLGDVINGLAYLHDFQPAV IHGDLKVYANIFVTSDLTACLGDFGLSRFRDSQESTVGATTGTTAGTLRWQAHELFGS REDGRTNCPSQESDIYSFGCVCLELMTGKPPFTEIRGDGAVVKAIMNKRTPQRPAADL LKYSLDDDLWALMEQCWNYDPSQRPKMELLL" gene complement(40746..41410) /locus_tag="BD410DRAFT_105758" mRNA complement(join(40746..40873,40926..40958,41011..41166, 41248..41276,41330..41410)) /locus_tag="BD410DRAFT_105758" /product="hypothetical protein" CDS complement(join(40841..40873,40926..40958,41011..41166, 41248..41250)) /locus_tag="BD410DRAFT_105758" /note="expressed protein" /codon_start=1 /product="hypothetical protein" /protein_id="TDL15522.1" /db_xref="JGIDB:Ricmel1_105758" /translation="MDLISSIEDLGDRNTPETSWLRDSTDGNTVLRFLDGPHRTECVH MVSSTKIYQRLLAYVYVQLKRNATLCSKCV" gene complement(<41810..>43165) /locus_tag="BD410DRAFT_845129" mRNA complement(join(<41810..42078,42138..42248,42305..42413, 42475..42562,42620..42676,42729..42744,42796..43028, 43086..>43165)) /locus_tag="BD410DRAFT_845129" /product="NAD-binding protein" CDS complement(join(41810..42078,42138..42248,42305..42413, 42475..42562,42620..42676,42729..42744,42796..43028, 43086..43165)) /locus_tag="BD410DRAFT_845129" /note="GO_function: GO:16491 - oxidoreductase activity; GO_process: GO:8152 - metabolic process" /codon_start=1 /product="NAD-binding protein" /protein_id="TDL15523.1" /db_xref="InterPro:IPR002198" /db_xref="JGIDB:Ricmel1_845129" /translation="MSSHKPFNPATDLPDLTGKVAIVTGSNSGMGFRAVQQLARKGAK VYLAARNESRATGAISQLEAEGLGPGNGKVEWLKLNLSDPKQAKAAAEEVLSKEKTLD ILVNNAAIQSSPWQMNYIGIQETMVVNHLSPYIFTKTLIPLLKSSALAGNDVRIVNVT SSTIALLPSNTHFRTKEDYNIKYQGQLMDGLKRYGTSKLANMLWTNELQRTFDAEKVP VICMSVDPGGVITEGSVAGTKKNVWMWLIFHVSKPFLYTAEQGGHSITLPAASPVVRA NRELYRGALLKDMKLSAKPKIGQDETLQKELTDSTERLLGEMGL" gene 43301..43896 /locus_tag="BD410DRAFT_106342" mRNA join(43301..43363,43417..43808,43872..43896) /locus_tag="BD410DRAFT_106342" /product="hypothetical protein" CDS join(43362..43363,43417..43729) /locus_tag="BD410DRAFT_106342" /note="expressed protein" /codon_start=1 /product="hypothetical protein" /protein_id="TDL15524.1" /db_xref="JGIDB:Ricmel1_106342" /translation="MTPGCTDVNCDRSNRKSARMYHGAEFLRTIAPGTRFLPPELGFR GGVIAYLSLVAILWYHFTQSAIDISETTNADSTSHVIFPHVAGHHRILHDIGKRGHAM VS" gene <45021..>46703 /locus_tag="BD410DRAFT_808852" mRNA join(<45021..45131,45187..45409,45462..45605, 45673..>46703) /locus_tag="BD410DRAFT_808852" /product="hypothetical protein" CDS join(45021..45131,45187..45409,45462..45605,45673..46703) /locus_tag="BD410DRAFT_808852" /note="expressed protein" /codon_start=1 /product="hypothetical protein" /protein_id="TDL15525.1" /db_xref="InterPro:IPR003480" /db_xref="JGIDB:Ricmel1_808852" /translation="MTEVSKRYLIYPTVPTDLDGQSSIIFPPTDTLALSFVLEFVWVL PTFIDITRHNEALSKTLQKFPPVAGRLRKLPDTDRAKGSIYIQLTNSAIPVSVVENYD GTRVNLDNAIVPSTAEWTDSFPGNEILEKDEPLLRFRFTKINKTGQMAYGLAWSHALG DGFILNLFLQYISHFYRGLDASSLPRPSFEKVFFPAPPSDTSAAKRFLPLMKHIRDAK PMQELVAATMQSQESTKPLNFVFSVPQMELLYKRAIAAAPEPSRAMFSKIDVLIAYLV FVYNTVLAEVHPDSEGIDTVVTTIEYRGNPSFAPTAMFGNAAITFTCPSFHAPSPLSK DAGARQRLQYFGRSIVAIAHSIRAGIIQTRSPAFLGQYLLYHNELCRRSYQQGLYQYI LPATPREITFNSSYKVPWRTAVDFYEPGSKHAGGRMTTFHTNAILERYIRIFPANPIP IFDKDGKLLNCDMSFDGGVEVAFRLDSSMADLFKGKVELDMTSGFGYSFANL" gene complement(<47246..>50058) /locus_tag="BD410DRAFT_845131" mRNA complement(join(<47246..47288,47358..47455,47508..47725, 47776..47785,47839..47895,47948..48053,48103..48312, 48364..48439,48494..48500,48563..48880,48937..49017, 49090..49261,49320..49389,49443..49516,49573..49628, 49684..49841,49902..>50058)) /locus_tag="BD410DRAFT_845131" /product="alcohol oxidase" CDS complement(join(47246..47288,47358..47455,47508..47725, 47776..47785,47839..47895,47948..48053,48103..48312, 48364..48439,48494..48500,48563..48880,48937..49017, 49090..49261,49320..49389,49443..49516,49573..49628, 49684..49841,49902..50058)) /locus_tag="BD410DRAFT_845131" /note="GO_function: GO:16614; FAD binding - oxidoreductase activity, acting on CH-OH group of donors [GO Ref 50660]" /codon_start=1 /product="alcohol oxidase" /protein_id="TDL15526.1" /db_xref="InterPro:IPR000172" /db_xref="InterPro:IPR007867" /db_xref="JGIDB:Ricmel1_845131" /translation="MVVFTHFVPLAITSSLLTLLPVAQASSASFERRSLTATPSDVNG KTFSYIVVGGGTAGLTVAVRLSEDATNTVVVLEAGDAHLNEPQILVPFEVGSVYGNPD YDWLYQSVPQTHAGGAVVNLTRGKVLGGSSALNAMLWDRSAEFEYNNIAQLGNSGWDW SGLLPYFKKPENFTHPDPAFAQKWNLTFDDATRGHGGPIQTTFPNAIPDAELPTEPAA LSLGLNIISDPMSGTTKGAWRSSCSIDPVHRTRSYSVNAYFTPNQGRSNLVVLTGAHV TKINWASNSTSAGLTASGVSFITNGTTYTVGASREVILSASSIGSPQVLELSGVGSKS LLSKIGINSTIDLPGVGENMQEHIYSTVSYAVKSGVETLDPLLSNQTLLAQQEALFGA TPATGDLGYTASGITFLGLSTLFNNTVSDALLASLNSQIASTNRTKGQVQQQSIQVQT VRSADSSVVEVLVEGIHIGPDTADPNTGYVTFLTLLQQPFSRGSTHVPSANALDHPNI DPNYFSIDFDLTVLSTVAKYVRTTLSKTVPYANIIAEEQFPGSSVKTDDDWKAYVKSN FNSQGHTTGTCSMMPQAKGGVVDANLKVYGTTNVRVVDLSIMPQQFSGHPQALVYTIA EKGADIIKNANK" gene complement(50515..51123) /locus_tag="BD410DRAFT_796332" mRNA complement(join(50515..50570,50645..50701,50755..51123)) /locus_tag="BD410DRAFT_796332" /product="hypothetical protein" CDS complement(50829..51098) /locus_tag="BD410DRAFT_796332" /codon_start=1 /product="hypothetical protein" /protein_id="TDL15527.1" /db_xref="JGIDB:Ricmel1_796332" /translation="MNSLSLPCNPRERSSMVPAPPPQAPKCMETVFYHPYPISTVGTP RPTLRGFVSPQRRFSHPGVSLAPNGSFDLVRNGRPIASRSTWNNI" gene 52513..55818 /locus_tag="BD410DRAFT_106452" mRNA join(52513..52842,52896..52929,52984..53000,53107..53210, 53260..53303,53367..53389,53450..53697,53747..54017, 54070..54105,54162..54241,54301..54318,54385..54490, 54544..54733,54788..54804,54865..55026,55080..55247, 55302..55357,55413..55463,55517..55564,55613..55818) /locus_tag="BD410DRAFT_106452" /product="alcohol oxidase" CDS join(52746..52842,52896..52929,52984..53000,53107..53210, 53260..53303,53367..53389,53450..53697,53747..54017, 54070..54105,54162..54241,54301..54318,54385..54490, 54544..54733,54788..54804,54865..55026,55080..55247, 55302..55357,55413..55463,55517..55564,55613..55630) /locus_tag="BD410DRAFT_106452" /note="GO_function: GO:16614; FAD binding - oxidoreductase activity, acting on CH-OH group of donors [GO Ref 50660]" /codon_start=1 /product="alcohol oxidase" /protein_id="TDL15528.1" /db_xref="InterPro:IPR000172" /db_xref="InterPro:IPR007867" /db_xref="JGIDB:Ricmel1_106452" /translation="MMRSNFALCLILSLCRLASLVGASTTFDHIIVGGGASGLVLAEK LSRNSILYAQFIGDPAVDWEFVTVPQTHVSNKVISLPRGKALGGTAAVNGMYFVRAAS KEYDAWETLGNPGWNWNTVDANIKAIENFTPASSSDAATFHATDSLQNHGTTGPIHVT YSNYWEPISVVPAYFSAVNALGIPTNTQAAGGSTFGAWQAPCSIDAKNRSRSYAVNTF LPAAEKRQNLVVMTGSQVTKINLLSGASSSGNIRASGVQYIVNNATQNVNVTTTGNVI LTAGTYQTPKLLELSGIGNSTVLKKFSITPRVDLPGVGENLQDHYAAFTTFQLKDGLG PEVGQVFLNSTFFVEQFQLYLTKREGPFASVPSTTVSMIPFQTFINATKLAGLKASLD NSLKAFENTPLEKVITLQRSFIEDPTIPQIEFVLAPMIQDPTVTPDPSKTYMSIAVVY MRPFARGNVHISSTNPLQNPLIDHNYLGITEFETGVMAEALRFITEKIATTKPLSDLI EKTLQPAPGFSDTVLQNYVQHNVVSSWHPCGSASMLPKDQGGVVDANLKVYGTENIRV ADASMIPLEIGTHTMATVYANALHAADVI" gene complement(56244..59031) /locus_tag="BD410DRAFT_756373" mRNA complement(join(56244..56393,56452..56601,56660..56800, 56861..56919,56975..56997,57049..57238,57292..57310, 57365..57468,57526..57787,57847..57990,58046..58145, 58194..58271,58327..58589,58655..59031)) /locus_tag="BD410DRAFT_756373" /product="cytochrome P450" CDS complement(join(56303..56393,56452..56601,56660..56800, 56861..56919,56975..56997,57049..57238,57292..57310, 57365..57468,57526..57787,57847..57990,58046..58145, 58194..58271,58327..58573)) /locus_tag="BD410DRAFT_756373" /note="GO_function: GO:4497; iron ion binding - monooxygenase activity [Evidence 20037] [GO Ref 5506; heme binding]" /codon_start=1 /product="cytochrome P450" /protein_id="TDL15529.1" /db_xref="InterPro:IPR001128" /db_xref="JGIDB:Ricmel1_756373" /translation="MRSIGADISKYYSMAQAIYQKSPFYCWGIGLLAGLWIARFSWLS LHRRRKLPPGPPGLPILGNVFQLPQFQWLRFTQWKEQYGPIFSLNLAGQPVVVLNSHK VTADLLDRRSNIYSDRPRFIMAGEILTGGIFIAFSSYGELWRRMRRAAHEGLNIRAAE TYQPLQEEESAVLVSNLLQEPDEWDDHLKRSAASTVLCAVYGSSPIASKDDPLVTRIN DLMHRLVRAALPGAYLVEIFPVMNYLPSWMAKWKREGLEWHRKDSIMFEGFMEGVRKK MENGTSPACFASSLIENNKQNNLTKKEYSWLAGTMFGAGAETTAAALSVFMLAMSLYP EVMRKAQAEIDAVVGRDRLPTFQDRDRLPYIRAIVKEVLRWRPVGPLGLPRRSVKDDW YNGYFIPKGTIVIANAWAMNRDPEIFPDYDEFRPERFLDATGTIDQTPPDTHGQGHVT YGFGRRICVGMNVANQALFIDIASILWAVNIEKAVDSNGKLIIPSRTECVDEGLVVRP VPFKCRITARSADVPSMLEMTKSKTAL" gene <59620..>60994 /locus_tag="BD410DRAFT_732597" mRNA join(<59620..59710,59767..59874,59937..60076,60144..60317, 60370..60382,60430..60516,60567..>60994) /locus_tag="BD410DRAFT_732597" /product="terpenoid synthase" CDS join(59620..59710,59767..59874,59937..60076,60144..60317, 60370..60382,60430..60516,60567..60994) /locus_tag="BD410DRAFT_732597" /codon_start=1 /product="terpenoid synthase" /protein_id="TDL15530.1" /db_xref="JGIDB:Ricmel1_732597" /translation="MSSVKLGKVAPFPPLPGQPFPPARNHPRWKELYRLHDEWMMTYW PFSSEKKRARIPFMNLAGFSTWCAPAADFDRMVWGGRIAGIFFLADDYIDSGKMLDRI PGFKKAATGTGDRAERCHDIVFRAIKETSHPRTFDQLTKCTHEWWDSNIHEPFRNLDQ YLATRRVNIAMYFANSYFRYTLDINLTDEQVNHPLMREAEGIVSDHVGLTNDYFSYAK EKLTNSDDTNIIRMLQDHEGLTYEQAKVVVEKKIRQKEQDFIPAGMAVLNDPELGKDP AVRHWIACLPYCMGGNNAWSQEVCSIFSYSTDFLMHSFKERTLQHWRRHWRRPVPKVE LRSRGDSQRRSS" gene 63895..64572 /locus_tag="BD410DRAFT_756379" mRNA join(63895..64028,64080..64149,64213..64350,64404..64572) /locus_tag="BD410DRAFT_756379" /product="hypothetical protein" CDS join(63958..64028,64080..64149,64213..64350,64404..64493) /locus_tag="BD410DRAFT_756379" /codon_start=1 /product="hypothetical protein" /protein_id="TDL15531.1" /db_xref="JGIDB:Ricmel1_756379" /translation="MTIRVVALIKKKEGMTHEEFSDYWGKNHSKIFTSLKAVKQNLIK YNQFHVLPKLQDEFASLGMSLAPYDGAAEFWCEKKEDIFALFSDEEYRQNAVPDEQKF LDRAAVDILVGEDQLKFQKA" gene complement(<64780..>67384) /locus_tag="BD410DRAFT_732588" mRNA complement(join(<64780..64882,64947..65069,65130..65156, 65220..65363,65429..65456,65518..65571,65626..65648, 65704..65870,66000..66107,66171..66310,66380..66498, 66552..66695,66749..66816,66873..66905,66955..67031, 67089..67106,67156..>67384)) /locus_tag="BD410DRAFT_732588" /product="cytochrome P450" CDS complement(join(64780..64882,64947..65069,65130..65156, 65220..65363,65429..65456,65518..65571,65626..65648, 65704..65870,66000..66107,66171..66310,66380..66498, 66552..66695,66749..66816,66873..66905,66955..67031, 67089..67106,67156..67384)) /locus_tag="BD410DRAFT_732588" /note="GO_function: GO:4497; iron ion binding - monooxygenase activity [Evidence 20037] [GO Ref 5506; heme binding]" /codon_start=1 /product="cytochrome P450" /protein_id="TDL15532.1" /db_xref="InterPro:IPR001128" /db_xref="JGIDB:Ricmel1_732588" /translation="MSVVPSITFKHPITGEIGQLSYLYLLLLLPLLYTGWKKISDARD SKRSYPKFNGPKGLPFLGNILQLGDKQWLKYTEWHKTFGPVYRLNFAGQDVIVVGTAK CAADLMDRRPAIYSDRPRFIMATEILTGGMNLAFARYGDRWRRMRRAANNGLSLKAAQ EYTPLQEKEAIYLLHGLLHEKGNIDPQLRRTAAATVLSAVYAYPPISIGDHLVEKVEN YVDRMLKAALPGNYLVDIFPFMMYIPTWMAKWKSEGYAWFKKDTDMFLGLVDDVKTGL KDGTRSECFVAKLLDTTQQSDLDPVETAWLAGMMLSMASTLSFFILAMVLFPHVQTKL RAEVDAAVGRDRFPNYSDVRKLPYLNAVIKETLRWRPMGPLAVPHRSSQDDVYEGHFI PAGTLIFPNVWAMHHDESIYPDPEDFKPERFLAEDGVTPIHYADDAKDLGVHTFGFGR RSCIGYTVANNALALNAASIVFAFHIDKAKDASGNDITPDPNDLLDEGLAVRPTPFEC KITPRSPAIVEMINAAKVRYDGKSGI" gene 67845..70321 /locus_tag="BD410DRAFT_823050" mRNA join(67845..68007,68069..68120,68177..68254,68308..68341, 68403..68468,68529..68672,68730..68988,69043..69159, 69222..69388,69446..69468,69523..69545,69605..69663, 69719..69856,69924..70079,70157..70321) /locus_tag="BD410DRAFT_823050" /product="cytochrome P450" CDS join(67861..68007,68069..68120,68177..68254,68308..68341, 68403..68468,68529..68672,68730..68988,69043..69159, 69222..69388,69446..69468,69523..69545,69605..69663, 69719..69856,69924..70079,70157..70244) /locus_tag="BD410DRAFT_823050" /note="GO_function: GO:4497; iron ion binding - monooxygenase activity [Evidence 20037] [GO Ref 5506; heme binding]" /codon_start=1 /product="cytochrome P450" /protein_id="TDL15533.1" /db_xref="InterPro:IPR001128" /db_xref="JGIDB:Ricmel1_823050" /translation="MSIQLAALSALLVAVILVSFVTSSSSRNPKRLLLPPGPKGLPIL GNLLDIPSDHYWLKFDEWIRQYGPVCTISLMGKKVILLGSPNVAADLFDRRSAIYSDR PRWVFASEILARNMHVGTVRVGDTHRRFRKAIHTGLQPKALSSYHPVEEKESRVFLKQ VSQSPEKFRDHVKRYTAAVILGTMYGHQVTTFDSDRFAKRVFNSAAIFASSLAPGAFL VDVLPWLQYIPSWIPGAGWKKKAAKWADDDRVLYTEMTEAARENAAKQPSFISEGLVE NQYGVTEEELAYIGGTISQTPDTLMSVSSGFMLAMVRWPEVQRKAQEEIDRVVGRSRF PVFADRANLPYTTAIVKETCRWRPVAPLSVPHASTKDDEYMGYFIPKGTTVISSIWSI HRDPEVYPDPESFKPERFLDEDGKEKGTEESKVLGHHLYGFGRRLCPGATMADHAVWL FAAHNLWALNMKRALDDNGKEIIPNVDPLSFTSGGEASHPLPFKCRLELRPGVEEFLE SIEMPESE" gene 70569..71133 /locus_tag="BD410DRAFT_796340" mRNA 70569..71133 /locus_tag="BD410DRAFT_796340" /product="hypothetical protein" CDS 70723..70962 /locus_tag="BD410DRAFT_796340" /note="expressed protein" /codon_start=1 /product="hypothetical protein" /protein_id="TDL15534.1" /db_xref="JGIDB:Ricmel1_796340" /translation="MAGFRGHGENFNDFRAGDNPLFTIAHSHIPTKHKLAADFTLLPR DSINSLGVSLSSSTHTSYLSRKRSYGQNLLMDSYL" CONTIG join(QMKR01000740.1:1..7257,gap(800),QMKR01000741.1:1..16605, gap(150),QMKR01000742.1:1..47441) //