LOCUS MK024943 5270 bp RNA linear VRL 01-JAN-2020 DEFINITION Potato yellow vein virus isolate C segment RNA2, complete sequence. ACCESSION MK024943 VERSION MK024943.1 KEYWORDS . SOURCE Potato yellow vein virus ORGANISM Potato yellow vein virus Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Crinivirus; Crinivirus flavisolani. REFERENCE 1 (bases 1 to 5270) AUTHORS Sierra,A., Gallo,Y., Estrada,M., Gutierrez,P. and Marin,M. TITLE Molecular detection of four RNA viruses in potato seed-tubers in Antioquia (Colombia) JOURNAL Unpublished REFERENCE 2 (bases 1 to 5270) AUTHORS Sierra,A., Gallo,Y., Estrada,M., Gutierrez,P. and Marin,M. TITLE Direct Submission JOURNAL Submitted (02-OCT-2018) Biociencias, Universidad Nacional de Colombia sede Medellin, Calle 59 A N 63-20, Medellin, Antioquia, Colombia COMMENT ##Assembly-Data-START## Assembly Method :: MagicBlast v. 2018 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..5270 /organism="Potato yellow vein virus" /mol_type="genomic RNA" /isolate="C" /host="Solanum tuberosum" /db_xref="taxon:103881" /segment="RNA2" /geo_loc_name="Colombia" /collection_date="01-Apr-2018" CDS 607..2271 /note="HSP70h" /codon_start=1 /product="heat shock protein 70" /protein_id="QCI62252.1" /translation="MAHKAGLDFGTTFSTISSYSDGVMKVLKLNNSEYIPTCLSISDK GDVIIGGAAQVLDSGEIKTCYFYDLKRWVGVDRINYNVIKQKIKPAYVTSLVGNDVHI TGINKGFSCTYTVKQLILLFIDTVVRLFSKIENLNIVSINVSVPADYKCKQRMFMRSV CDSLGFSLRRIINEPSAAAIYNVSKYPNYKYFIMYDFGGGTFDCSLITRDGRFVTVAD TEGDSYLGGRDIDNAIQKYLMAKNKLSHPITSDFLASIKEECNSTSKTSFTVFDVNNR LKTVSFNKEDLAICTKPFCTRSLDILNNMIERNSITTGVIFLVGGSSLLKTVQDEVRS FSMKKNLECVIDKDLRNAVSFGCSMQHAQEDSGTMTYIDCNSHPLMDISMFGNPKIII RKPMSVPYTHIEKRKVDRHYNTALNIYEGSDLFTLNNDWLISADVRTKDYCLEGQELS IKYVYNIDGMLDLYIKSNFQNKDILLKNKFSLTEKIAKLDLKLTQLSTIDEAATLVAI LSYYNSDLEVLLKLVKTPSLFESELSRVVSTKELLSKLVSLNKNFS" CDS 2275..2442 /codon_start=1 /product="hypothetical protein PYVVs2_gp2" /protein_id="QCI62255.1" /translation="MNSLCRIIFEVNKNFCVYFLSNNRDFLGDELTYLDPSIEDLRDL LRDHFYIRKVW" CDS 2436..4001 /codon_start=1 /product="heat shock protein" /protein_id="QCI62256.1" /translation="MVSIFRSPVVRDFLSMVFKTNDPSEKIGEINKYLVKNFYIENQN KYRTNIKXXXTELTSNYFVRNNEIFVNDSNFLEILKLPVIYMYRIRPELTKNSAYLPE NIFASYNYEFYKNSFSPHYDKDLNSFLSSNKEIGCLYTERDIQEHYPSVHGVRLLTLY RVCNSLGRYVDLNELDNGNIKGFSIDPDSKAKIIGEGLSSNPLFNSCVEIFRSYLELS ATKAGNAKVEANKKIFTTYLNCMSLGESYERIRKNPLVIAKFIKLYEEFTKESRGFKD DFEAIKLLTPRFKVFLKKVFDVNSSLNDDILFIEMPKSSVVDLLSEPVSVGEYLRSKD AISVVSTSNTLSEKADLLATHIILRFLQDKLPAPEDILIDAFLMILGRTTTNSKRFGK PVLVTLKYENMSKEIDISVVVNALNNKVSGAHNEYLGMNVLRLWANSRSSRAMRLFRS LNFNPGLFSYCPGILDYMRFDFYKAIPLKDMTDEEVQSFRTLRLHTEKRTDPQGSYSA ECDNWILNLKNRS" CDS 4011..4265 /codon_start=1 /product="hypothetical protein PYVVs2_gp4" /protein_id="QCI62254.1" /translation="MNSISELITEFGEDRVDEIFALHRSFGQSNPPLCDVLLNLISSK LFSHDDVFEESIIEFGDLKSFLLVTKFIRGVYNSRYNLRY" CDS 4270..5037 /note="CP" /codon_start=1 /product="coat protein" /protein_id="QCI62253.1" /translation="MDPHGNPIVEPESSNSPESAGVSFTDSQKPPVDRKVKDDSYNLD LLISNVGRRDDIISPDDMSLDKLSKIQVRADRGDVLNDEDKLIFEGCLKNFCKRLTGV DPDPETFLGFFMSVAQMSLNQSTSVKNRKNLQLKNYLKIGDKEYIWKTADLLNYLSGQ FPNKSNPLRQYMRLCENQIEMLKSSGKIVSDGHLAAKHGTTSQYFSSVGDYVNGSKTN ISDDDLTANYLFKNAATKSTKKTKSIYNVAQLAGSIE" BASE COUNT 1741 a 837 c 1035 g 1636 t ORIGIN 1 ggacaacgta gtgatccctt gggttaagac tgagttctgt caccctatgt gaattacttc 61 cgtagctgaa agtatccact tggaccatgt ctgagttttc agttgcacca cacacacaag 121 accacaattt atttttccca gccagtaaat taaattaaaa aaataaaaaa tattttattt 181 ttgaaatctc gggataaaaa caaccatctt ggcacgatgg gcaacacacc ccccaacctt 241 agccgtatgg ctaatggctc tggagaattt ggttgtcctt tatccccgga ttagtatttt 301 tcattcaatt tctcatggca tagtagaatg aatctctgat gytgaactag tragtatgtc 361 caaacttcay tyagttcgac gtcaacagat tgcgagattt cagatttgat tctgagatag 421 tcgtctgccg ggtctaagat tcttcagacc ttctaytgtg ttctagagaa atataaacaa 481 aaaattcaaa aagaaataaa gtgccctcta tcttcaatac cagtgttaaa gaaaaattca 541 taaaagaaaa aagaaaaart ttttgttcat tttaaatttg aaaaacaaat aaaaatacaa 601 tctgatatgg ctcacaaagc tggattggat tttggtacca ccttctcaac catcagtagt 661 tatagcgatg gtgttatgaa agttctgaaa ttgaataact ccgagtatat tccgacttgy 721 ttgtctatat cagacaaagg ggacgtgata ataggcgggg ctgctcaagt tttagacagt 781 ggtgaaataa agacatgtta tttttatgac ctgaagcgtt gggtcggtgt agatagaatc 841 aattataatg tcataaaaca aaaaataaaa ccagcatayg tcaccagtct cgtaggcaat 901 gatgttcata ttactggaat aaataagggt ttttcttgca catatactgt gaagcagctt 961 atattattat ttattgatac tgtagttcgt ttattttcaa aaattgaaaa tttaaatata 1021 gttagtataa atgtctcagt ccctgccgat tacaaatgca agcagaggat gttcatgaga 1081 tcagtttgtg actcactggg tttttcatta agaaggatca tcaatgaacc ttcagccgca 1141 gcaatatata atgtgagcaa atatccaaac tataaatatt ttattatgta tgattttggt 1201 ggtggtactt ttgattgctc actaataacg agagatggga gattcgtaac cgtggcagat 1261 actgaaggag actcgtacct gggaggtcga gatattgata atgctatcca gaagtatttg 1321 atggcgaaga acaaactgtc tcatcccatc acctctgatt tcttagcctc aataaaagaa 1381 gaatgtaatt caacttcgaa gacttctttt acagtctttg atgtgaataa cagactcaag 1441 acagtttctt tcaataagga agatctggct atctgcacca aaccattttg tactagaagt 1501 cttgacattc ttaacaatat gattgagagg aattccataa ctactggtgt catatttcta 1561 gtcggaggat cttctctatt gaagactgtc caagatgaag tgagatcttt tagcatgaaa 1621 aagaatttgg aatgtgttat cgataaagat ttgagaaatg cagtgtcatt cggatgttca 1681 atgcaacatg ctcaagaaga ctcaggcacc atgacttaca tagactgtaa ctctcatccg 1741 ttaatggata tctcaatgtt tggtaatcca aagattatca tccgaaaacc aatgtcagtc 1801 ccatacactc acattgagaa gaggaaagtc gatcgccact acaatactgc tctgaacatt 1861 tatgaaggat cagacttgtt cactttgaat aatgattggt tgattagtgc tgatgtgcgc 1921 acgaaagatt actgtcttga gggtcaagaa ttaagtataa aatatgtata taatatagat 1981 ggtatgttag acttgtacat aaaaagtaat ttccaaaata aagacatcct actgaagaac 2041 aagttctctt taactgagaa gattgcaaaa ttagatttga agctgacaca attgtcaaca 2101 attgacgagg ctgctactct agttgcaatt ttgagttatt acaattcaga cctggaggtt 2161 ttactaaagc tggtaaaaac tccatctctc tttgaaagtg aactctcaag ggtagtttcc 2221 accaaggaac ttttaagtaa gttggtgtct ttaaataaaa atttttcatg attcatgaat 2281 tcactttgta ggataatttt tgaagtgaat aaaaattttt gtgtttattt cctgtctaat 2341 aacagagatt ttctggggga cgagttgact tacttggatc cgagcattga agatctcaga 2401 gatcttttaa gagatcattt ttatattagg aaagtatggt gagtattttt aggagtccag 2461 tagtcagaga ttttctcagt atggttttca aaaccaatga tccttctgag aaaatcggtg 2521 agataaataa atatttagta aaaaattttt atattgaaaa tcaaaataaa tatagaacta 2581 acataaagnn nnnnnnaaca gaattaacca gtaattattt tgttaggaat aatgagatat 2641 ttgtaaatga cagtaatttt ctggagattt tgaaattrcc agtgatttat atgtaccgga 2701 ttcgtccaga gttgacgaag aatagtgcat atcttcctga gaatatcttt gcctcctaca 2761 attatgaatt ttacaagaat agcttttctc ctcattatga taaagatttg aattcttttc 2821 tttctagtaa taaggagata ggctgtttat atacagagcg ggatattcag gaacactacc 2881 cgtcygttca tggagtcaga ttgcttacac tttatagggt ttgtaattct ttagggaggt 2941 atgtagattt gaatgaatta gataatggta atattaaagg attctcrata gatccagaca 3001 gtaaagcaaa gattatcgga gagggtcttt cctcgaatcc tcttttcaac tcgtgtgtgg 3061 agatatttag gagttatcta gagttgagtg ccactaaagc tgggaatgct aaggttgagg 3121 cgaataagaa gattttcact acatatctca actgtatgag tcttggggaa agttatgaga 3181 ggataaggaa gaatccactt gtgatagcaa agttcatcaa actctacgaa gaattcacca 3241 aagaatctag agggtttaaa gatgattttg aggccataaa acttctcact ccgaggttca 3301 aagtgttctt gaagaaggtt tttgatgtca attcatctct taatgatgac atcctgttca 3361 tagaaatgcc aaagtcttca gtggtggatt tgttgagcga accagtttca gttggagaat 3421 acttgaggtc aaaagatgca atatcagttg ttagtacttc caatactttg agtgagaaag 3481 cagacttgtt agcaactcat atcatactga gattcttaca agacaagctg cctgcacccg 3541 aagatatcct catagacgca ttcttgatga tcttggggag aacaaccact aattctaaaa 3601 ggtttggtaa accagtgcty gtaactttaa agtatgagaa catgtccaaa gaaattgata 3661 tctcagtggt tgtaaatgca ctgaataata aggtcagtgg tgctcacaat gaatacctgg 3721 gtatgaatgt actgagactg tgggcgaatt ctagaagctc gagagccatg agattgttta 3781 ggtctctcaa tttcaaccca ggattattct cttattgtcc tggaatactt gattacatga 3841 ggtttgactt ttataaggca attcctttga aagacatgac agatgaggaa gtgcaatctt 3901 ttcgcacttt aaggttacac actgagaaga gaacagaccc gcaaggttcg tatagtgctg 3961 aatgtgacaa ttggattctg aatttgaaga atagatcgtg acatctagga atgaattcaa 4021 tttctgagtt aattactgaa ttcggtgaag atagagttga cgaaattttc gcacttcata 4081 ggagttttgg tcaatccaat cctccattgt gtgacgtctt gctcaacctc atttcatcaa 4141 aactcttctc tcatgacgat gtgtttgaag aaagcataat agaatttgga gacttgaaga 4201 gttttctgtt agtgactaaa ttcatcagag gtgtgtataa tagtaggtat aatttgaggt 4261 actagaacaa tggatcctca tggaaatccg atcgtggaac ctgagtcaag taactcccct 4321 gaatctgcag gtgtgtcatt taccgattca caaaaacctc ctgtagatcg gaaagtaaaa 4381 gatgactcgt acaatttaga tctyttgatc tccaatgttg ggagacggga tgatattata 4441 tctcctgatg atatgagtct tgacaaactt tcaaagattc aggttagagc agacagagga 4501 gatgtcttga atgatgaaga taaattaatc tttgaaggtt gtttgaagaa cttttgcaaa 4561 agattgactg gagttgatcc agatcctgag acctttcttg ggttcttcat gagtgtagct 4621 caaatgtcat taaatcaatc tacttctgtt aaaaacagaa agaatctcca gttgaagaat 4681 tatttaaaaa taggagataa agaatatatt tggaagaccg ccgacttgtt gaattacttg 4741 tctggacagt ttccgaataa gagtaatcca ctgagacaat atatgagatt gtgcgagaat 4801 caaattgaaa tgctgaaatc ttctggtaag atagtcagtg atggtcatct cgctgccaaa 4861 catggtacga cctctcagta tttctcgtca gtcggagatt atgtcaatgg ttcgaaaacc 4921 aacatttctg atgatgattt gactgcaaat tacctgttca agaatgcagc aactaagagt 4981 actaagaaga caaaatcaat ttataatgtc gctcaattag caggatctat tgagtagatc 5041 acatatacag ctacggaagt tacaacacat agcatgtaga acaaatctta acaaaaactt 5101 tatatatagt ataaatataa caaataaaaa taaacaaaag gggtagtttt gcttaatatt 5161 ttcaatgccc cgggtcagat gcgaataatg tattcagtgc atctaataaa tcccaaaatt 5221 attataaaaa tcgatgagaa tcgcgctgtc gcgatctcat ctgagacgag //