LOCUS MH111149 2449 bp DNA circular VRL 21-JUL-2019 DEFINITION Porcine associated porprismacovirus isolate 17668x82_593, complete genome. ACCESSION MH111149 VERSION MH111149.1 KEYWORDS . SOURCE Porcine associated porprismacovirus ORGANISM Porcine associated porprismacovirus Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus. REFERENCE 1 (bases 1 to 2449) AUTHORS Ashworth,J.L., Robertson,G.S., Lu,L., Perry,M., Bogaardt,C., Ivens,A., My Phuc,T., Rabaa,M.A., Tri Tue,N., Pham Thi Thanh,T., Hong Anh,P., Baker,S. and Woolhouse,M.E.J. TITLE Novel CRESS-DNA viruses, one of possible zoonotic origin, found in patient with diarrhoea of unknown etiology JOURNAL Unpublished REFERENCE 2 (bases 1 to 2449) AUTHORS Ashworth,J.L., Robertson,G.S., Lu,L., Perry,M., Bogaardt,C., Ivens,A., My Phuc,T., Rabaa,M.A., Tri Tue,N., Pham Thi Thanh,T., Hong Anh,P., Baker,S. and Woolhouse,M.E.J. TITLE Direct Submission JOURNAL Submitted (20-MAR-2018) Ashworth Laboratories, Usher Institute of Population Health Sciences & Informatics, Charlotte Auerbach Road, Edinburgh EH9 3FL, United Kingdom COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 3.9.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2449 /organism="Porcine associated porprismacovirus" /mol_type="genomic DNA" /isolate="17668x82_593" /isolation_source="rectal swab" /host="Sus scrofa domesticus" /db_xref="taxon:2496634" /geo_loc_name="Viet Nam" /collection_date="17-Oct-2013" gene complement(33..764) /gene="Rep" CDS complement(33..764) /gene="Rep" /codon_start=1 /product="replication-associated protein" /protein_id="QDM14459.1" /translation="MQTYMMTIPRTVSKRALRIMIEKNDCKKWIIGKETGKNGYEHWQ IRIETSNDSFFEWMQEHIPTAHVEKSDNGVDACRYETKEGQYVMYSDRVQNLMQRYGA FRPNQKRAMQALQATNDRQVVVWYDETGNVGKSWFTGALWERGQAYVTPPTIDTVKGL IQWVASCYIDGGWRPYVIIDVPRSWKWSEQLYSAIESIKDGLIYDTRYHSRMINIRGV KVLVMTNTMPKLDKLSQDRWCICTF" gene 941..1927 /gene="CP" CDS 941..1927 /gene="CP" /codon_start=1 /product="capsid protein" /protein_id="QDM14460.1" /translation="MVTVRVSETYDLSTKVGKMGIVGIHTPKSDLITRHYGGLCQNFK YAKFVSCDVALACASMLPADPLQIGQDAGSIAPQDMFNPILYRAVSNESMNNILAYLE GKATLDASLEKGSIRDINNTDFKFGEASVDQFQMYYGMLSNSDGWRKAMPQAGLEMNG LYPMVFQVTVNTGMPGNLGVGDDGNPYGLSATEGATPFPGVPVRMMRGPGMRMPRFPT VRFGTNEQYYLIGDVPGKTNFSDFGMDAYVAMIVLPPAKLNQLYYRLKVTWTVEFIDV RSQADILNWHSLAAIGDVSYGTDYATQSKAMASKTAMVDATGADVEKVMDGI" BASE COUNT 569 a 624 c 601 g 655 t ORIGIN 1 tagtgttacg aaaaggagcc ccctcggcct cctcagaagg tgcatatgca ccacctgtcc 61 tgcgatagct tgtcgagctt cggcatggtg tttgtcatga cgagaacttt caccccacgt 121 atgttaatca tcctcgaatg gtagcgggtg tcgtagataa ggccgtcctt gatggactct 181 atcgcactgt agagttgttc cgaccatttc caacttctcg gtacgtcgat tatgacgtat 241 ggtctccacc caccgtctat gtagcatgag gcgacccatt ggatgagccc tttcaccgtg 301 tcgattgtcg gcggtgtgac gtatgcttgc ccacgttccc acaatgcccc cgtaaaccag 361 ctcttaccga cgtttcccgt ctcgtcgtac cagaccacta cctgacggtc gttcgtcgct 421 tgtagggcct gcatggccct tttctggttc ggtctgaatg cgccatacct ctgcatcaga 481 ttttgaacac ggtctgaata catgacgtat tgtccctcct tggtttcgta tctgcatgca 541 tccactccgt tgtctgattt ttcaacgtgt gcggttggga tgtgttcttg catccactcg 601 aagaaactgt cgttgcttgt ttcgattctg atttgccaat gctcgtatcc attctttcct 661 gtctcctttc caatgatcca tttcttgcag tcgttttttt caatcatgat tctcagggcg 721 cgcttgctta cggtccttgg aattgtcatc atgtacgttt gcataaccgc cgtattgcga 781 aagcaattta taacggcgta tttgattacc ttacgtcgtt tacgactata acgactataa 841 caaaaaggag taatgtttgt aatggcatac tacagaaggc gcagaacata cggaagaagg 901 acttacggac gcaggtacta caggcgcagg agatactgac atggtaaccg ttcgtgtttc 961 ggaaacctac gacctctcga ctaaggtcgg aaaaatgggt attgttggta tccacacccc 1021 taaaagtgac ctgataaccc gtcactacgg cggactctgt cagaacttca agtacgctaa 1081 gttcgtttca tgcgacgttg cgcttgcatg cgcatccatg ctccctgccg accctctcca 1141 gattggacag gatgctggaa gtatcgcacc tcaggacatg ttcaacccta ttctctacag 1201 ggcggtctcg aatgagtcga tgaacaacat tcttgcttac cttgagggaa aagcaaccct 1261 tgatgcttct cttgagaaag gttctattcg tgatatcaac aacactgatt tcaagttcgg 1321 agaggcaagc gtcgaccagt tccagatgta ctacggaatg ctctcgaaca gtgatggatg 1381 gcgtaaagcc atgcctcagg caggtctgga gatgaacggt ctctatccta tggtgtttca 1441 ggtcaccgtc aatactggta tgcctggcaa cctcggagtc ggagacgatg gaaatcccta 1501 cggtctctct gctaccgaag gagcaacccc gttccctggt gttcctgttc gcatgatgcg 1561 tggtcctggt atgagaatgc ccagattccc tactgtcagg ttcggaacca atgaacagta 1621 ctacctcatc ggagacgtac ccggcaagac caacttctcg gatttcggaa tggatgccta 1681 tgtcgcaatg atcgttcttc ctccggcaaa gctgaaccag ctctactaca ggctcaaggt 1741 gacttggacc gtcgaattca ttgatgttcg ctctcaggct gatatcctga attggcacag 1801 tctcgcggct atcggtgatg tttcctatgg aaccgattat gcgactcagt cgaaagctat 1861 ggcttcaaaa actgctatgg tcgacgctac aggagctgat gtggagaagg tgatggatgg 1921 aatatgacgg acagattcgg taatcccgac cctatcggag atatcttcag gagtctttac 1981 ggcgatgaca cggtcaagtc ggctttcaat caggcaaatt attttgcatc tggtcttcct 2041 gtggttggcg gtctatttag taccgttgac aattatcgct attacagcga ctacatgagg 2101 aatactggcc taacttgggc tgatgtgaaa tatcctgcca gaatgagcgt aggcggatat 2161 ggctcggctc tcaattacgt atcctcgaac ataaagaggt tgtacgaatg aaggtctggt 2221 taaagatgat gataaaactc cgcgattggc ttgaagcccg catcgaatac cataaagaag 2281 agtaaaccac ccgacagtct actgtggggt aagggccccc gaacgggcgg tagccccccc 2341 cagtggaacg ttctcagacc gtccgaggct tgcgtcagca gatccgagga cggagggtac 2401 ctttcctcca cccccctata cccctaaagg ggtatagaag gggctccgc //