LOCUS AH001877 5867 bp DNA linear ROD 01-AUG-2016 DEFINITION Mus musculus domesticus strain BALB/c T-cell differentiation antigen (CD40) gene, complete cds. ACCESSION AH001877 M94126 M94127 M94128 M94129 VERSION AH001877.2 KEYWORDS T-cell differentiation antigen; cell surface glycoprotein. SOURCE Mus musculus domesticus (western European house mouse) ORGANISM Mus musculus domesticus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 5867) AUTHORS Grimaldi,J.C., Torres,R., Kozak,C.A., Chang,R., Clark,E.A., Howard,M. and Cockayne,D.A. TITLE Genomic structure and chromosomal mapping of the murine CD40 gene JOURNAL J. Immunol. 149 (12), 3921-3926 (1992) PUBMED 1281194 COMMENT On or before Aug 1, 2016 this sequence version replaced M94129.1, M94128.1, M94127.1, M94126.1, AH001877.1. FEATURES Location/Qualifiers source 1..5867 /organism="Mus musculus domesticus" /mol_type="genomic DNA" /strain="BALB/c" /sub_species="domesticus" /db_xref="taxon:10092" /sex="female" /tissue_type="liver" /germline /tissue_lib="Sau3A in lambda GEM-11" gene 354..5585 /gene="CD40" misc_feature 354..629 /gene="CD40" /note="double stranded sequence" CDS join(534..584,1345..1423,1720..1845,2080..2226,2526..2619, 3534..3595,4206..4292,4394..4425,4781..4972) /gene="CD40" /citation=[1] /codon_start=1 /product="T-cell differentiation antigen" /protein_id="AAA37404.1" /translation="MVSLPRLCALWGCLLTAVHLGQCVTCSDKQYLHDGQCCDLCQPG SRLTSHCTALEKTQCHPCDSGEFSAQWNREIRCHQHRHCEPNQGLRVKKEGTAESDTV CTCKEGQHCTSKDCEACAQHTPCIPGFGVMEMATETTDTVCHPCPVGFFSNQSSLFEK CYPWTSCEDKNLEVLQKGTSQTNVICGLKSRMRALLVIPVVMGILITIFGVFLYIKKV VKKPKDNEMLPPAARRQDPQEMEDYPGHNTAAPVQETLHGCQPVTQEDGKESRISVQE RQVTDSIALRPLV" exon <534..584 /gene="CD40" /number=1 intron order(585..>938,<1039..1344) /gene="CD40" /citation=[1] /number=1 gap 939..1038 /estimated_length=unknown misc_feature 1283..2639 /gene="CD40" /note="double stranded sequence" exon 1345..1423 /gene="CD40" /number=2 intron 1424..1719 /gene="CD40" /number=2 exon 1720..1845 /gene="CD40" /number=3 intron 1846..2079 /gene="CD40" /number=3 exon 2080..2226 /gene="CD40" /number=4 intron 2227..2525 /gene="CD40" /number=4 exon 2526..2619 /gene="CD40" /number=5 intron order(2620..>2809,<2910..3533) /gene="CD40" /citation=[1] /number=5 gap 2810..2909 /estimated_length=unknown misc_feature 3386..3638 /gene="CD40" /note="double stranded sequence" exon 3534..3595 /gene="CD40" /number=6 intron order(3596..>3900,<4001..4205) /gene="CD40" /citation=[1] /number=6 gap 3901..4000 /estimated_length=unknown misc_feature 4181..5585 /gene="CD40" /note="double stranded sequence" exon 4206..4292 /gene="CD40" /number=7 intron 4293..4393 /gene="CD40" /number=7 exon 4394..4425 /gene="CD40" /number=8 intron 4426..4780 /gene="CD40" /number=8 exon 4781..>4972 /gene="CD40" /number=9 BASE COUNT 1180 a 1417 c 1536 g 1434 t ORIGIN 1 gcctcctggc ccttcagctg tggtctttcc cgttttctga ctttgcggtg acactgggga 61 cttccttaga cctctctgga gacgctttcg gttctgcaga gattcccagg ggtattgtgg 121 gtggggtggg gtaacaatag tgtccctgtg gcgctcccag tccctatagt aatccttcac 181 ccctctgcta tcttgcaatc aggagagtcc ttagccctgc tataggtggc ttttgaggtc 241 ctggatgcga ggagggggac tggggggtgg gtcgggtaat gtaagaaaag ggctcctttt 301 gggaccctgg ctcctccagc caccttggtg cccatccctt aaactcttgg ggacaatcag 361 actcctggga aggtcctggg gaaatccctg ctcagtgact agccataggc ccaccgcgat 421 tggtgcccga agaccccgcc ctcttcctgg gcgggactcc tagcagggac tttggagtga 481 cttgtggctt cagcaggagc cctgtgattt ggctcttctg atctcgccct gcgatggtgt 541 ctttgcctcg gctgtgcgcg ctatggggct gcttgttgac agcggtgagt ggcttgtgtt 601 ctaacctcca agggagttag ggcttagaga gtgagagatg gaaagaggaa agaggagaca 661 agactttgga gatgagagat cttcctactg gaagcggcgg ttagtaggat gggcaagatc 721 tctcgcgtct tgacacacac acacacacac acaaatgagg tgggctgctc ctctttcctt 781 ccagaaggtc ggggttctgt tccacgaagc ccacagggaa ccttagggag ggcattcctc 841 cacagcggtg cctggacagc tttgtctgac ccaagccttg ctccggagct gactgcagag 901 actggaaagg gttagcagac aggaagcctg gctgggggnn nnnnnnnnnn nnnnnnnnnn 961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1021 nnnnnnnnnn nnnnnnnngg ctgaggccag cttgagccag cagtctcgga ctctggagga 1081 agaactggag ttctccctac ctgctgcgtc tttgggagca ctgaagagtc ctgtgcatct 1141 gttcggatta gtgggttctg cgttcttgct ttggtagatg gcagtaagac gatgtgacag 1201 cagagtaaaa aaaaaaaaat agacctcaca ctctgggggc tcacttttct gctttggatt 1261 tccacatcag ctacagcctg cgtcttggct aactttcaac atgccggtgg aagatccctt 1321 ccagctgtcc acttctgttt ttaggtccat ctagggcagt gtgttacgtg cagtgacaaa 1381 cagtacctcc acgatggcca gtgctgtgat ttgtgccagc caggtgagat gctagccctc 1441 ctgccccgta ccaagaccct ttccctcttg gattgctggt ggatgcagac cccatatata 1501 gactgtgaac tcaagtctaa aatgacccat ttctccctct tccttgatac cagaataccc 1561 caagctgtcc cgtctcttcc atcttcctta ctcgtgtagg gtctgagata tccattccca 1621 aactccaacc ctctcacctc cagtcctggc tccctgggtt gtgacacagt ctgtgtcaca 1681 ggattggccc aacctgcctc atatcctcct gtttttcagg aagccgactg acaagccact 1741 gcacagctct tgagaagacc caatgccacc catgtgactc aggcgaattc tcagcccagt 1801 ggaacaggga gattcgctgt caccagcaca gacactgtga acccagtgcg tggggctgcc 1861 tgggaagggg tacttgagaa ccgggttgat gttcctaatg ctgaaatccc tctgttgtca 1921 gtggccaggg tctttcctgt gagctagagt ctgggttgaa ggggctagtt gactgacatc 1981 tgtactggga agagcgagaa aaccagcaga tgacgtgagg agtggggtcc tggctgcggc 2041 cagcgggttt tcccattctt ccttctcatc tccgctcaga tcaagggctt cgggttaaga 2101 aggagggcac cgcagaatca gacactgtct gtacctgtaa ggaaggacaa cactgcacca 2161 gcaaggattg cgaggcatgt gctcagcaca cgccctgtat ccctggcttt ggagttatgg 2221 agatgggtga gtggcctgcc tggggaaaca gctctgtggg tgggagagct ggggtgagct 2281 ttgggtctct ggcctccaga agctgagggc agagaaagtc ccacctgggc tgggatcttt 2341 catttggatt tggacctggg ctctgggcag cttcctgcgg ggttgtggcc ttcaggggct 2401 gtgttgcctt ggggtaagaa gctgagggca ggtgttctgt cctgccctgc ttgtctgctg 2461 gctcccttgg gagtcagaca ctgtggccca ggtgtctgct catgcatctt tccgcatcct 2521 tccagccact gagaccactg ataccgtctg tcatccctgc ccagtcggct tcttctccaa 2581 tcagtcatca cttttcgaaa agtgttatcc ctggacaagg tataagggtc acctctccct 2641 aaccaatgac agggtgggtc ttgtctcagt ctctttagcc acctgctgtt cagtccctga 2701 ctttccccac ccccatggtg gtcacttact ggtgaatgtg accttgtggc tggcttaagg 2761 gacactttgt gcagttcttt tagcttgctt ctgcttagtt aatagaagcn nnnnnnnnnn 2821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnt gctgcaacgg tcctctcacc agtcagtcac 2941 tccctacgtg cctgcctcag gctgccctgc ctgcagctgc tcatcaccgc acttgtcacc 3001 atgtgactcc ccctcctgtc acactgttcc tacttagctg ggtcccactt tcccatcctt 3061 caatgccttc tgatgccccc cttcatgggg aagtcttccc agaagaccct gaaagcagag 3121 cttcttaaca gggaccagtt tggctctcgt gggggcgttg gccacatctg atcatctttt 3181 ggatgctgta cttggtcggg gaggctgttt ctggcatttg gttagtggag gcaaaggtgc 3241 tgctaaatag tctgtgaaac aaaggccatt tcccagcaca aaatacctgc agattggcca 3301 tttccatttc aatatgacgg taacctttcc tttctgtggt ttctgttctt cacttaatga 3361 tcatcttggg atgctgcact ctaagtcacg tgctcagtga acaaggactt gctgcttgct 3421 gggggactcc cctgggcttg gaagtcttat ggcggggagc cctgtttctg tctgtctgtc 3481 tgcatgtgtg tgtgtacatg cacatacatg tgtacacatg tgtctttgtg cagctgtgag 3541 gataagaact tggaggtcct acagaaagga acgagtcaga ctaatgtcat ctgtggtgag 3601 tccaggggag aatggccttg ccaagtcttt gggaagcagg gaactgggga gagactgagg 3661 cacgcaggaa cactgactgg gataggagtg agaccaagag gcagcttggg gtacagtacc 3721 ttagctcccg tcttgggacg tgggtaagtc acatcccttg tctgagcctc agtttcttca 3781 attgtgaaat aggcccacag cagctccttc ctcccttacc tgggtcgtgt aagtggcatt 3841 ggaattttgc agttggaagc tgctgccctt gcttgagggt caggttcact gtgacagtgt 3901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn gcgtttaaag ttcccctagt 4021 gaccacatta cccacaatgc tactgcttaa aaagctctga cctggattct gggagtgtac 4081 agatgcattt gggaaggagt gggagcacct gccagtgaga acctgccagt gggagcacac 4141 tccattagga gcacccgcca gtgggagcat ctgccagtgg ggtccactca agtctgtttc 4201 tccaggttta aagtcccgga tgcgagccct gctggtcatt cctgtcgtga tgggcatcct 4261 catcaccatt ttcggggtgt ttctctatat cagtgagtgc tcaggagagg aaagggaggg 4321 agggttcagc cctgtcgaac cagcctcctg actcaccctc gcaatgtccc acaccccttc 4381 ttcttctcac tagaaaaggt ggtcaagaaa ccaaaggata atgaggtaag ccatccctga 4441 gggagagatg ctggaaagag tgactggtgg gcagggaggg aggctcacgg cgtagggaga 4501 cagactcagt gagcagagag cttgtattgg atcccgcctt caggggccag taggtggaac 4561 caaaggggca gtttctcctg ctggtcggca gtggctctgg aaatttcctg ccaaatttca 4621 tatgtccagc agggggcaga aggcatccaa gaaatcagct ttggtacacc cccatcctcc 4681 caccccattg gaaaggactt gaaggaggga ttctattcct cagaggcagg gtggctctgt 4741 ggctagaggt gacattggac cttatacctt gactccccag atgttacccc ctgcggctcg 4801 acggcaagat ccccaggaga tggaagatta tcccggtcat aacaccgctg ctccagtgca 4861 ggagacactg cacgggtgtc agcctgtcac acaggaggat ggtaaagaga gtcgcatctc 4921 agtgcaggag cggcaggtga cagacagcat agccttgagg cccctggtct gaaccctgga 4981 actgctttgg aggcgatggc tgcttgctga cctttgaagt ttgagatgag ccaagacaga 5041 gcccagtgca gctaactctc atgcctgccc cctgtcattt ctcaacttgc tttttaagga 5101 tggagggaaa gctcgggcat cgggaggtcc acagtgatat ctaccaagtg cagcagtgca 5161 ggacccagag ttgtcttgct gcggcgttca ctgtaaggag tcgtggctac aggagtccgt 5221 ggcccgcagc ttgtgctgct agagggcacc tggttgccat cagcagggta ctggctaaat 5281 aaatctgtaa ttatttatac aatggcatct cagaaactct agcaggtggg gcagaaaaca 5341 ggtagtggaa tgatgggtag agaaacagct tttaaaacac attccaaggc aggtaagatg 5401 gcttttgtgg gtaaaggagc ttgctgccca aacccggtta cctgattttg atccctggga 5461 cttcatggta aaagggagag aaccaaatcc agagggttgt catttgacct ccatgtgtgc 5521 tctgtggtaa tgtaccccgt gtgtgcacat gtgcacatat cctaaaatgg atgtggtggt 5581 gtattgtaga aattatttaa tcccgccctg gggtttctac ctgtgtgtta ccatttagtt 5641 cttgaataaa agacacactc aacctttata tttacaataa gccttaaaca gcacaagtac 5701 tgggcacctg cctaccctgt atgctatttg aatctacttt cctattgata acccccagtt 5761 attacttact acttactatg tttcattggg gctgctctta tctccgattg gccagcccca 5821 ggtccatgtt ctcttaaagc tctcctaatc catggtggct tctcttt //