LOCUS MLCMMOB 7188 bp DNA linear BCT 15-MAY-2001 DEFINITION Methylococcus capsulatus methane monooxygenase component A alpha chain (mmoX), methane monooxygenase A beta chain (mmoY), soluble methane monooxygenase regulatory protein B (mmoB), soluble methane monooxygenase hydroxylase component gamma subunit (mmoZ), and methane monooxygenase component C (mmoC) genes, complete cds; and unknown gene. ACCESSION M90050 M32314 M58498 M58499 VERSION M90050.3 KEYWORDS . SOURCE Methylococcus capsulatus ORGANISM Methylococcus capsulatus Bacteria; Pseudomonadota; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus. REFERENCE 1 (bases 1 to 7188) AUTHORS Stainthorpe,A.C., Lees,V., Salmond,G.P., Dalton,H. and Murrell,J.C. TITLE The methane monooxygenase gene cluster of Methylococcus capsulatus (Bath) JOURNAL Gene 91 (1), 27-34 (1990) PUBMED 2205538 REFERENCE 2 (bases 1 to 7188) AUTHORS Murrell,J.C. TITLE Direct Submission JOURNAL Submitted (26-APR-1993) Department of Biological Sciences, University of Warwick, Coventry CV4 7AL, England REFERENCE 3 (bases 1 to 7188) AUTHORS McDonald,I. and Murrell,J.C. TITLE Direct Submission JOURNAL Submitted (05-OCT-1999) Department of Biological Sciences, University of Warwick, Coventry CV4 7AL, England REMARK Sequence update by submitter REFERENCE 4 (bases 1 to 7188) AUTHORS McDonald,I. and Murrell,J.C. TITLE Direct Submission JOURNAL Submitted (11-MAY-2000) Department of Biological Sciences, University of Warwick, Coventry CV4 7AL, England REMARK Sequence update by submitter COMMENT On or before May 15, 2001 this sequence version replaced M58498.1, M58499.1, M90050.2. FEATURES Location/Qualifiers source 1..7188 /organism="Methylococcus capsulatus" /mol_type="genomic DNA" /db_xref="taxon:414" gene 1478..3061 /gene="mmoX" CDS 1478..3061 /gene="mmoX" /function="1.14.13.25" /note="MmoX" /codon_start=1 /transl_table=11 /product="methane monooxygenase component A alpha chain" /protein_id="AAB62392.3" /translation="MALSTATKAATDALAANRAPTSVNAQEVHRWLQSFNWDFKNNRT KYATKYKMANETKEQFKLIAKEYARMEAVKDERQFGSLQDALTRLNAGVRVHPKWNET MKVVSNFLEVGEYNAIAATGMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAK NGQDPAGHNDARRTRTIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFTNPLIV AVTEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDPASAKYLNTDLNNAFW TQQKYFTPVLGMLFEYGSKFKVEPWVKTWDRWVYEDWGGIWIGRLGKYGVESPRSLKD AKQDAYWAHHDLYLLAYALWPTGFFRLALPDQEEMEWFEANYPGWYDHYGKIYEEWRA RGCEDPSSGFIPLMWFIENNHPIYIDRVSQVPFCPSLAKGASTLRVHEYNGEMHTFSD QWGERMWLAEPERYECQNIFEQYEGRELSEVIAELHGLRSDGKTLIAQPHVRGDKLWT LDDIKRLNCVFKNPVKAFN" gene 3142..4311 /gene="mmoY" CDS 3142..4311 /gene="mmoY" /EC_number="1.14.13.25" /note="MmoY" /codon_start=1 /transl_table=11 /product="methane monooxygenase A beta chain" /protein_id="AAB62393.2" /translation="MSMLGERRRGLTDPEMAAVILKALPEAPLDGNNKMGYFVTPRWK RLTEYEALTVYAQPNADWIAGGLDWGDWTQKFHGGRPSWGNETTELRTVDWFKHRDPL RRWHAPYVKDKAEEWRYTDRFLQGYSADGQIRAMNPTWRDEFINRYWGAFLFNEYGLF NAHSQGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDESTAVPKAEW TNGEVYKSARLAVEGLWQEVFDWNESAFSVHAVYDALFGQFVRREFFQRLAPRFGDNL TPFFINQAQTYFQIAKQGVQDLYYNCLGDDPEFSDYNRTVMRNWTGKWLEPTIAALRD FMGLFAKLPAGTTDKEEITASLYRVVDDWIEDYASAIDFKADRDQIVKAVLAGLK" gene 4328..4753 /gene="mmoB" CDS 4328..4753 /gene="mmoB" /note="MmoB" /codon_start=1 /transl_table=11 /product="soluble methane monooxygenase regulatory protein B" /protein_id="AAF04158.2" /translation="MSVNSNAYDAGIMGLKGKDFADQFFADENQVVHESDTVVLVLKK SDEINTFIEEILLTDYKKNVNPTVNVEDRAGYWWIKANGKIEVDCDEISELLGRQFNV YDFLVDVSSTIGRAYTLGNKFTITSELMGLDRKLEDYHA" gene 4764..5276 /gene="mmoZ" CDS 4764..5276 /gene="mmoZ" /note="MmoZ" /codon_start=1 /transl_table=11 /product="soluble methane monooxygenase hydroxylase component gamma subunit" /protein_id="AAF04157.2" /translation="MAKLGIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFR NSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAK DKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRG VRVVHLQSPH" CDS 5432..5743 /note="OrfY" /codon_start=1 /transl_table=11 /product="unknown" /protein_id="AAF04159.1" /translation="MVESAFQPFSGDADEWFEEPRPQAGFFPSADWHLLKRDETYAAY AKDLDFMWRWVIVREERIVQEGCSISLESSIRAVTHVLNYFGMTEQRAPAEDRTGGVQ H" gene 5756..6802 /gene="mmoC" CDS 5756..6802 /gene="mmoC" /EC_number="1.14.13.25" /note="MmoC" /codon_start=1 /transl_table=11 /product="methane monooxygenase component C" /protein_id="AAB62391.2" /translation="MQRVHTITAVTEDGESLRFECRSDEDVITAALRQNIFLMSSCRE GGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCRTYPKTDLEIELPYTHCRIS FGEVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGTDVSRS YSPANLPNPEGRLEFLIRVLPEGRFSDYLRNDARVGQVLSVKGPLGVFGLKERGMAPR YFVAGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTEPELFYIDELKSLERSMRNLTV KACVWHPSGDWEGEQGSPIDALREDLESSDANPDIYLCGPPGMIDAACELVRSRGIPG EQVFFEKFLPSGAA" BASE COUNT 1515 a 2103 c 2236 g 1334 t ORIGIN 1 cggatcgttg ccggcttttc ccatcaggcc tcccgagcgg aaatggggaa gaggcggacc 61 tccgtcccca ccgcctcggc cagtacacgg cgagagaagt gctcgatcgc ggcggtgtcg 121 gcttcctgca ggatgtcgat cttgttcaac accaaaaaga tacggccggc gtacttccgg 181 acctctcatg gaggaactcc agttcggcct cactcaccgc ctggtcggcg gagaggacga 241 acagggcggc atcgcactgc ggcacgcgcg cccaggcggt gtcggtgttg tggcggaaca 301 ccgagccgac gccgggtgtg tccacgatgc gcacgccatt ccccaggagc ggcgagggcg 361 tccggatcag acttcccgca cgcccttcgc gttgcccggg ttgcccggct cggtgatgta 421 atccgcgagc atatccggac ggatgtcgaa ggggctgcct tccagcggct ggacggtgat 481 ccggggggga tagccgtagg cgagcacggt caccaccgag gtcagcggca ccgcccgcgt 541 gggcagcagg ttctcaccca gcagcgcgtt gatcaggctg gtcttgcccc gtttgaactg 601 gccgaccgtc aggacgtcga aatggccggc ctgcagcttg tcacgcaggg cgagggcggg 661 gcgcagagcg gcggggaggc gtccgccagc tcgtcgatca ggctcaggag ttcggttttg 721 agatccgcat agccggtcgt tggcgcctca ccggcgatcg gccaacgggg gatcgcgttc 781 attccgcagt ggtcggatcg atgacggtgc ggatttcgtt gatcgcatcg gcgggaaagc 841 cgccttccag tgcgtgctgt accagcgtgg cggcgtcggg ggcaatgtag acgcagtaca 901 ccttgtcgtc ggtgacatag ctctcgatcc actgaacctg cggtcccatg gcgttgagga 961 tcgaacagga ttacgggaga tctgccgcag ttcgtcgcgc gacaggtttc cggcggccgc 1021 gaatcgtgcg ctctatgaca tatttgggca tggttatcag ccttacggtt ctggtaagga 1081 aaaaataggc ttgtattgtg cttatccgaa gataagcgct ttccgcgcag cccgattctt 1141 tcatggatca cgattccatt gaatgcggcg aaagtctcag ggtccggtca tgaatgaaga 1201 gttatggcgg cccagtacgt caccgttatg tccgatggct gtatcaaaca aagacacgtg 1261 tagtgatatc ggacaactcg tccatccccg tcggagcatt cggataacgt gctcatcgtt 1321 ccaaaatatt gatatacggt atacgtatcc gaagaataaa gttggcacga tccctgtaac 1381 taggttgtca cgacctcgtc ggaggttgta tgtccggtgt tccgtgacgt catcgggcat 1441 tcatcattca tagaatgtgt tacggaggaa acaagtaatg gcacttagca ccgcaaccaa 1501 ggccgcgacg gacgcgctgg ctgccaatcg ggcacccacc agcgtgaatg cacaggaagt 1561 gcaccgttgg ctccagagct tcaactggga tttcaagaac aaccggacca agtacgccac 1621 caagtacaag atggcgaacg agaccaagga acagttcaag ctgatcgcca aggaatatgc 1681 gcgcatggag gcagtcaagg acgaaaggca gttcggtagc ctgcaggatg cgctgacccg 1741 cctcaacgcc ggtgttcgcg ttcatccgaa gtggaacgag accatgaaag tggtttcgaa 1801 cttcctggaa gtgggcgaat acaacgccat cgccgctacc gggatgctgt gggattccgc 1861 ccaggcggcg gaacagaaga acggctatct ggcccaggtg ttggatgaaa tccgccacac 1921 ccaccagtgt gcctacgtca actactactt cgcgaagaac ggccaggacc cggccggtca 1981 caacgatgct cgccgcaccc gtaccatcgg tccgctgtgg aagggcatga agcgcgtgtt 2041 ttccgacggc ttcatttccg gcgacgccgt ggaatgctcc ctcaacctgc agctggtggg 2101 tgaggcctgc ttcaccaatc cgctgatcgt cgcagtgacc gaatgggctg ccgccaacgg 2161 cgatgaaatc accccgacgg tgttcctgtc gatcgagacc gacgaactgc gccacatggc 2221 caacggttac cagaccgtcg tttccatcgc caacgatccg gcttccgcca agtatctcaa 2281 cacggacctg aacaacgcct tctggaccca gcagaagtac ttcacgccgg tgttgggcat 2341 gctgttcgag tatggctcca agttcaaggt cgagccgtgg gtcaagacgt gggaccgctg 2401 ggtgtacgag gactggggcg gcatctggat cggccgtctg ggcaagtacg gggtggagtc 2461 gccgcgcagc ctcaaggacg ccaagcagga cgcttactgg gctcaccacg acctgtatct 2521 gctggcttat gcgctgtggc cgaccggctt cttccgtctg gcgctgccgg atcaggaaga 2581 aatggagtgg ttcgaggcca actaccccgg ctggtacgac cactacggca agatctacga 2641 ggaatggcgc gcccgcggtt gcgaggatcc gtcctcgggc ttcatcccgc tgatgtggtt 2701 catcgaaaac aaccatccca tctacatcga tcgcgtgtcg caagtgccgt tctgcccgag 2761 cttggccaag ggcgccagca ccctgcgcgt gcacgagtac aacggcgaga tgcacacctt 2821 cagcgaccag tggggcgagc gcatgtggct ggccgagccg gagcgctacg agtgccagaa 2881 catcttcgaa cagtacgaag gacgcgaact gtcggaagtg atcgccgaac tgcacgggct 2941 gcgcagtgat ggcaagaccc tgatcgccca gccgcatgtc cgtggcgaca agctgtggac 3001 gttggacgat atcaaacgcc tgaactgcgt cttcaagaac ccggtgaagg cattcaattg 3061 aaacgggtgt cgggctccgt cacagggcgg ggcccgacgc acgatcgttc gatcaacctc 3121 aaaccaaaaa ggaacatcga tatgagcatg ttaggagaaa gacgccgcgg tctgaccgat 3181 ccggaaatgg cggccgtcat tttgaaggcg cttcctgaag ctccgctgga cggcaacaac 3241 aagatgggtt atttcgtcac cccccgctgg aaacgcttga cggaatatga agccctgacc 3301 gtttatgcgc agcccaacgc cgactggatc gccggcggcc tggactgggg cgactggacc 3361 cagaaattcc acggcggccg cccttcctgg ggcaacgaga ccacggagct gcgcaccgtc 3421 gactggttca agcaccgtga cccgctccgc cgttggcatg cgccgtacgt caaggacaag 3481 gccgaggaat ggcgctacac cgaccgcttc ctgcagggtt actccgccga cggtcagatc 3541 cgggcgatga acccgacctg gcgggacgag ttcatcaacc ggtattgggg cgccttcctg 3601 ttcaacgaat acggattgtt caacgctcat tcgcagggcg cccgggaggc gctgtcggac 3661 gtaacccgcg tcagcctggc tttctggggc ttcgacaaga tcgacatcgc ccagatgatc 3721 caactcgaac ggggtttcct cgccaagatc gtacccggtt tcgacgagtc cacagcggtg 3781 ccgaaggccg aatggacgaa cggggaggtc tacaagagcg cccgtctggc cgtggaaggg 3841 ctgtggcagg aggtgttcga ctggaacgag agcgctttct cggtgcacgc cgtctatgac 3901 gcgctgttcg gtcagttcgt ccgccgcgag ttctttcagc ggctggctcc ccgcttcggc 3961 gacaatctga cgccattctt catcaaccag gcccagacat acttccagat cgccaagcag 4021 ggcgtacagg atctgtatta caactgtctg ggtgacgatc cggagttcag cgattacaac 4081 cgtaccgtga tgcgcaactg gaccggcaag tggctggagc ccacgatcgc cgctctgcgc 4141 gacttcatgg ggctgtttgc gaagctgccg gcgggcacca ctgacaagga agaaatcacc 4201 gcgtccctgt accgggtggt cgacgactgg atcgaggact acgccagcgc gatcgacttc 4261 aaggcggacc gcgatcagat cgttaaagcg gttctggcag gattgaaata atagaggaac 4321 tattacgatg agcgtaaaca gcaacgcata cgacgccggc atcatgggcc tgaaaggcaa 4381 ggacttcgcc gatcagttct ttgccgacga aaaccaagtg gtccatgaaa gcgacacggt 4441 cgttctggtc ctcaagaagt cggacgagat caataccttt atcgaggaga tccttctgac 4501 ggactacaag aagaacgtca atccgacggt aaacgtggaa gaccgcgcgg gttactggtg 4561 gatcaaggcc aacggcaaga tcgaggtcga ttgcgacgag atttccgagc tgttggggcg 4621 gcagttcaac gtctacgact tcctcgtcga cgtttcctcc accatcggcc gggcctatac 4681 cctgggcaac aagttcacca ttaccagtga gctgatgggc ctggaccgca agctcgaaga 4741 ctatcacgct taaggagaat gacatggcga aactgggtat acacagcaac gacacccgcg 4801 acgcctgggt gaacaagatc gcgcagctca acaccctgga aaaagcggcc gagatgctga 4861 agcagttccg gatggaccac accacgccgt tccgcaacag ctacgaactg gacaacgact 4921 acctctggat cgaggccaag ctcgaagaga aggtcgccgt cctcaaggca cgcgccttca 4981 acgaggtgga cttccgtcat aagaccgctt tcggcgagga tgccaagtcc gttctggacg 5041 gcaccgtcgc gaagatgaac gcggccaagg acaagtggga ggcggagaag atccatatcg 5101 gtttccgcca ggcctacaag ccgccgatca tgccggtgaa ctatttcctg gacggcgagc 5161 gtcagttggg gacccggctg atggaactgc gcaacctcaa ctactacgac acgccgctgg 5221 aagaactgcg caaacagcgc ggtgtgcggg tggtgcatct gcagtcgccg cactgaaggg 5281 aggaagtctc gccctggacg cgacggcatc gccgtgaagt ccagggggca gggatgccgt 5341 tccgggccgg caggctggcc cggaatctct ggttttcagg gggcgtgccg gtccacggct 5401 ccccccctcc atctttcgta aggaaatcac catggtcgaa tcggcatttc agccattttc 5461 gggcgacgca gacgaatggt tcgaggaacc acggccccag gccggtttct tcccttccgc 5521 ggactggcat ctgctcaaac gggacgagac ctacgcagcc tatgccaagg atctcgattt 5581 catgtggcgg tgggtcatcg tccgggaaga aaggatcgtc caggagggtt gctcgatcag 5641 cctggagtcg tcgatccgcg ccgtgacgca cgtactgaat tattttggta tgaccgaaca 5701 acgcgccccg gcagaggacc ggaccggcgg agttcaacat tgaacaggta agtttatgca 5761 gcgagttcac actatcacgg cggtgacgga ggatggcgaa tcgctccgct tcgaatgccg 5821 ttcggacgag gacgtcatca ccgccgccct gcgccagaac atctttctga tgtcgtcctg 5881 ccgggagggc ggctgtgcga cctgcaaggc cttgtgcagc gaaggggact acgacctcaa 5941 gggctgcagc gttcaggcgc tgccgccgga agaggaggag gaagggttgg tgttgttgtg 6001 ccggacctac ccgaagaccg acctggaaat cgaactgccc tatacccatt gccgcatcag 6061 ttttggtgag gtcggcagtt tcgaggcgga ggtcgtcggc ctcaactggg tttcgagcaa 6121 caccgtccag tttcttttgc agaagcggcc cgacgagtgc ggcaaccgtg gcgtgaaatt 6181 cgaacccggt cagttcatgg acctgaccat ccccggcacc gatgtctccc gctcctactc 6241 gccggcgaac cttcctaatc ccgaaggccg cctggagttc ctgatccgcg tgttaccgga 6301 gggacggttt tcggactacc tgcgcaatga cgcgcgtgtc ggacaggtcc tctcggtcaa 6361 agggccactg ggcgtgttcg gtctcaagga gcggggcatg gcgccgcgct atttcgtggc 6421 cggcggcacc gggttggcgc cggtggtctc gatggtgcgg cagatgcagg agtggaccgc 6481 gccgaacgag acccgcatct atttcggtgt gaacaccgag ccggaattgt tctacatcga 6541 cgagctcaaa tccctggaac gatcgatgcg caatctcacc gtgaaggcct gtgtctggca 6601 cccgagcggg gactgggaag gcgagcaggg ctcgcccatc gatgcgttgc gggaagacct 6661 ggagtcctcc gacgccaacc cggacattta tttgtgcggt ccgccgggca tgatcgatgc 6721 cgcctgcgag ctggtacgca gccgcggtat ccccggcgaa caggtcttct tcgaaaaatt 6781 cctgccgtcc ggggcggcct gaaccgggga agtaccgtga ccaccgagca gttcccgccc 6841 caattcctgc gtgaaatgat cgagcagctg gacgccagca tccaggagct cgcacgcaag 6901 gaaaagggac ttgcggcatc cctgggcacg ggccgggtcg ccgagctcaa ggaatactgg 6961 gaccacgttc tcactcccga ggaggaatgg gagctcaagc gaccatggac ttccgcgacc 7021 gggaactggt gtggatctgg tcccgtctca ggcgggcccg aacctcccgc gccaatgccg 7081 gggaggccta tatcgccagc tgtcgccggc gccgcgaaaa aacgaacaat cctgaaacgg 7141 agtcgacggg tatcgttggg aaaaaggtta tctgtcgccc tattttgt //