LOCUS AH001997 3194 bp DNA linear ROD 10-JUN-2016
DEFINITION Mus musculus strain B10.A cD8 beta-chain (Ly-3) gene, complete cds.
ACCESSION AH001997 M26441 M26442 M26443 M26444 M26445 M26446
VERSION AH001997.2
KEYWORDS transmembrane protein.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3194)
AUTHORS Nakayama,K., Shinkai,Y.I., Okumura,K. and Nakauchi,H.
TITLE Isolation and characterization of the mouse CD8 beta-chain (Ly-3)
genes. Absence of an intervening sequence between V- and J-like
gene segments
JOURNAL J. Immunol. 142 (7), 2540-2546 (1989)
PUBMED 2784466
COMMENT On or before Jun 10, 2016 this sequence version replaced M26441.1,
M26442.1, M26443.1, M26444.1, M26445.1, M26446.1, AH001997.1.
FEATURES Location/Qualifiers
source 1..3194
/organism="Mus musculus"
/mol_type="genomic DNA"
/strain="B10.A"
/db_xref="taxon:10090"
/tissue_type="blood"
gene 912..3080
/gene="Ly-3"
prim_transcript 912..1109
/gene="Ly-3"
/note="cD8 beta-chain (Ly-3) mRNA and intron"
exon 912..1023
/gene="Ly-3"
/number=1
CDS join(981..1023,1260..1622,1824..1919,2120..2209,
2410..2446,2648..2660)
/gene="Ly-3"
/codon_start=1
/product="cD8 beta-chain"
/protein_id="AAA39456.1"
/translation="MQPWLWLVFSMKLAALWSSSALIQTPSSLLVQTNHTAKMSCEVK
SISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL
SIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVLPTTAPTKKTTLKMKKKKQCPF
PHPETQKGLTCSLTTLSLLVVCILLLLAFLGVAVYFYCVRRRARIHFMKQFHK"
sig_peptide join(981..1023,1260..1279)
/gene="Ly-3"
mat_peptide join(1280..1622,1824..1919,2120..2209,2410..2446,
2648..2657)
/gene="Ly-3"
/product="cD8 beta-chain"
intron 1024..>1109
/gene="Ly-3"
/number=1
gap 1110..1209
/estimated_length=unknown
intron <1210..1259
/gene="Ly-3"
/number=1
exon 1260..1622
/gene="Ly-3"
/number=2
intron 1623..>1672
/gene="Ly-3"
/number=2
gap 1673..1772
/estimated_length=unknown
intron <1773..1823
/gene="Ly-3"
/number=2
exon 1824..1919
/gene="Ly-3"
/number=3
intron 1920..>1969
/gene="Ly-3"
/number=3
gap 1970..2069
/estimated_length=unknown
intron <2070..2119
/gene="Ly-3"
/number=3
exon 2120..2209
/gene="Ly-3"
/number=4
intron 2210..>2259
/gene="Ly-3"
/number=4
gap 2260..2359
/estimated_length=unknown
intron <2360..2409
/gene="Ly-3"
/number=4
exon 2410..2446
/gene="Ly-3"
/number=5
intron 2447..>2497
/gene="Ly-3"
/number=5
gap 2498..2597
/estimated_length=unknown
intron <2598..2647
/gene="Ly-3"
/number=5
exon 2648..3080
/gene="Ly-3"
/number=6
BASE COUNT 653 a 759 c 633 g 649 t
ORIGIN Chromosome 6.
1 ggatcagttt ccctggacag cagctctctc aactcacctc tgccagcctc cacaggcctc
61 cccgttcttc atgggttctt gatggggctt tgatctcaaa actgatgaag aagcctcagg
121 gcatacagca ctgtaaggca gggcagggga ggggagacat acagacaccc cagtccgtag
181 ggctctaggt ccaggtttgg ctttgcctca ctttcaggca aggtctgagc ccctctgtgg
241 caccccagct tgcctctctt ccctcctttc tctctgtgtt ggctaacttc ccttcctccc
301 ttacaaggga tctccatcac tccagggcca gctggactct gaactgggag gtcttcataa
361 ctgttttcct tgctgagaca cacacacaca cacacacaca cacacacaca cacacacaca
421 cgtaaagcct ctgtctcctg ccaccacgtg ttccctacca caatggactg tgtcctcaaa
481 ccaagatgaa cccctcctcc agctgctcag aaagaacgaa tgtaaagacg tgtctgaatt
541 agggccaagc ttcacaaaac catgaggcct ggcgcatgct ggcctctgtg actcagttgt
601 cccaaggtat cagggttctg tcccgagctc ccccctgggg caagaggcat cacacaggtg
661 caaccccttg gcatgactga gtctgagatc tatcacttcc tctcaccaga aaacaagagt
721 cctggtgggc tctttgaaaa gtcaaggctt tgatgctgta taggatgaag atgaaggcac
781 tccatacaca cacacacaca cacacacaca cacacacaca cacacacaca cacacacaca
841 tcacgattcc gcccctgccc tggtggcccc gccctcttag ctcacttacg ttcctggtgc
901 cccacccgcc caagctggct cctaacctac ctttcagttg acagagcact gaggggaaca
961 gtgtccccaa aagcgccaag atgcagccat ggctctggct ggtcttcagt atgaagctgg
1021 caggtaagac ccagagtggg gctaccccca atctgcacta gagcagggaa cttaggcctg
1081 gtatctcagc aacaggagga atagacaggn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1141 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1201 nnnnnnnnna ttgtgtgtgt atagcaacag cctggttgat gtcttctggt ttcttgtagc
1261 tctctggagc agctctgccc tcattcagac cccttcgtcc ctgctggttc aaaccaacca
1321 tacggcaaag atgtcctgtg aggttaaaag catctctaag ttaacaagca tctactggct
1381 gcgggagcgc caggacccca aggacaagta ctttgagttc ctggcctcct ggagttcttc
1441 caaaggagtt ttgtatggtg aaagtgtgga caagaaaaga aatataattc ttgagtcttc
1501 agactcaaga cggccctttc tcagtatcat gaatgtgaag ccagaggaca gtgacttcta
1561 cttctgcgcg acggttggga gccccaagat ggtctttggg acagggacga agctgactgt
1621 gggtaagaat gttctcaagg ctgtgaatga gcacacacac acacacatgt acnnnnnnnn
1681 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
1741 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nntaagtcct gctgtttacc tgactaagat
1801 ataggtctca cttctttcta tagttgatgt ccttcctaca actgccccaa ccaagaagac
1861 taccctgaag atgaagaaga agaagcaatg cccgttcccc cacccagaga cccagaaggg
1921 taagttttcc attgttgcac tcacataaaa aaggtagctt tccactttcn nnnnnnnnnn
1981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc ttggcggaga gtcggtgttg catgtgtgtg
2101 tcatgtgtgt ctttttcagg cctgacatgc agccttacca ccctcagcct gctggtagtc
2161 tgcatcctgc ttctgctggc attcctcgga gtggccgtct acttttactg tgagtgagtc
2221 ggcgtcgcgg gacattgaag ggcccccact ttctacctgn nnnnnnnnnn nnnnnnnnnn
2281 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2341 nnnnnnnnnn nnnnnnnnng tgatccacca accacgcgct gcttgtttgt ctctgctctg
2401 ctcttccagg tgtgcggagg agagcccgaa ttcacttcat gaaacagtaa gtgctgttct
2461 ccaaaaagtc acgaactcgg gggcctgaga gtttggannn nnnnnnnnnn nnnnnnnnnn
2521 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
2581 nnnnnnnnnn nnnnnnngtg tcactggcct gaaaataaga gtcttacaat ttgctgttgt
2641 ttcccaggtt tcacaaatga tcagcgccca caacactgat agcctgctag caataaaagg
2701 actgtaactc aatcaaagca agatttgaac tagtgagaga cagcgcattc aagactggag
2761 aggcccttgc ccttgctcaa gctgcctgct ttgaactgct gcaacgtctg tgtgtggtct
2821 ggggtctcac agggaaggcc ccagaaccca agctcactca cagagtggct gaagaaccaa
2881 gaactccaca ccaccatgta ctcttcttgg actgggcctt ggacagtggc cttccagcca
2941 ctgtctttgt cagttgcttg gtatgacagc cttattgact ctttggcctt tcatggaaaa
3001 gagctagccg ggaccctgga gaagactgca aatcctcaca cagagaagcc acctcatgaa
3061 taaagttttc tgcaaacagt ttcagggctc tcagcagcca tcttactctc tcaggccttg
3121 ccgtgggttt gggaggctgt tggctcagga gacagacttc tacttcatct cctagtaggc
3181 aagtttctaa gctt
//