LOCUS PLYGEN 4981 bp DNA circular VRL 11-JUN-2003 DEFINITION Budgerigar fledgling polyomavirus, complete genome. ACCESSION M20775 VERSION M20775.1 KEYWORDS genome. SOURCE Gammapolyomavirus avis (BFPyV) ORGANISM Gammapolyomavirus avis Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Gammapolyomavirus. REFERENCE 1 (bases 1 to 4981) AUTHORS Rott,O., Kroger,M., Muller,H. and Hobom,G. TITLE The genome of budgerigar fledgling disease virus, an avian polyomavirus JOURNAL Virology 165 (1), 74-86 (1988) PUBMED 2838972 REFERENCE 2 (bases 1 to 4981) AUTHORS Stoll,R., Dong,L., Kouwenhoven,B., Hobom,G. and Mueller,H. TITLE Molecular and biological characteristics of avian polyomaviruses: Isolares from different species of birds indicate that avian polyomaviruses form a distinct subgenus within the polyomavirus genus JOURNAL J. Gen. Virol. (1992) In press COMMENT On Jun 17, 1994 this sequence version replaced gi:332791. *lab host source = chick embryo cells Draft entry and computer-readable sequence [1] kindly submitted by G.Hobom 28-SEP-1988. FEATURES Location/Qualifiers source 1..4981 /organism="Gammapolyomavirus avis" /mol_type="genomic DNA" /db_xref="taxon:1891747" old_sequence 416..418 /citation=[1] /replace="cc" CDS 779..964 /codon_start=1 /product="agno-like protein" /protein_id="AAB59756.1" /translation="MRQALARQALLSLLHSLTRLPLLLPPLRLLLLLLLPSPPRQPAL ASRLTQPNRPNRGRLAK" CDS 977..2002 /codon_start=1 /product="virus protein 2" /protein_id="AAB59757.1" /translation="MGAIISAIAGLFELGALGGLAVDAAVNTAEIEAFIGELVLQDFS VAEIFDAIETSGIPLANTAVPVAELQQTAATSGLIGQALSAPSLIAASVKAFAGDPVA AGNNMALQVWRDQMDILFPGAEWFSNAVHNINPLAWAQSLYEQVGQSIWNYMTGNIGQ AVIHQIEERTTALIVYQSRGIYDILARALETARWTLTTAAVDTYQTLKSYYGELPAVS GRVEAFRRYHEVAQGRSFFEDSDIQDVLEGKKAQKRIEGPQEMTGQTIEQQTPPGGAM QRHANDWLLPLILGLYGDLTPEWRYQLKERLNVPKRKRKLPTTSAGTSPPSKRRYRGV RRKVRSR" CDS 1295..2002 /codon_start=1 /product="virus protein 3" /protein_id="AAB59758.1" /translation="MALQVWRDQMDILFPGAEWFSNAVHNINPLAWAQSLYEQVGQSI WNYMTGNIGQAVIHQIEERTTALIVYQSRGIYDILARALETARWTLTTAAVDTYQTLK SYYGELPAVSGRVEAFRRYHEVAQGRSFFEDSDIQDVLEGKKAQKRIEGPQEMTGQTI EQQTPPGGAMQRHANDWLLPLILGLYGDLTPEWRYQLKERLNVPKRKRKLPTTSAGTS PPSKRRYRGVRRKVRSR" CDS 1899..2930 /codon_start=1 /product="virus protein 1" /protein_id="AAB59759.1" /translation="MSQKGKGSCPRPQQVPRLLVKGGIEVLDVKSGPDSITTIEAYLQ PRPGQKNGYSTVITVQAEGYQDAPHSTEVPCYSCARIPLPTINDDITCPTLLMWEAVS VKTEVVGVSSILNMHSGAFRAFNGYGGGFTICGPRIHFFSVGGEPLDLQACMQNSKTV YPAPLIGPGEGERRETAQVLDTGYKARLDKDGLYPIECWCPDPAKNENTRYYGNLTGG PETPPVLAFTNTTTTILLDENGVGPLCKGDGLFLSAADVAGTYVDQRGRQYWRGLPRY FSIQLRKRNVRNPYPVSGLLNSLFNDLMPRMTGQSMQGSDAQVEEVRVYEGMEGLAPE IDMPPKAPR" CDS complement(join(2987..4405,4637..4981)) /codon_start=1 /product="large T antigen" /protein_id="AAB59760.1" /translation="MASLRRLTELLCLPVTATAADIKTAYRRTALKYHPDKGGDEEKM KELNTLMEEFRETEGLRADETLEDSDPEPEESGYATFENVSVPDIDGAFFKLMKLKKC MQTYFSVNERRKQQSCPDCHLLITSITKMPQLKAHLYEHFGIKGHIVAHWTGIALLVL QLEKPTRISTVHNFCKKYCTISICSVRGIKKNCVHALIKTLLDVPGLDLEECSIDMNV VDEKQFMHAMLYDYAVQIDCTDALLLLAIYKRLAQPTDKCPECQKDKDTVKRKRSTHI DDHPRHQHNASLFLHIKDQKRLCQCAVDAVLAEKRFRSATMTRDERLKERFRTVLRNI QELLDGETEAIDDFVTAILLFNMLFPDVDVIVDILQTMVKNPPKRRYYIFKGPVNTGK TTVAAAILALCTGASLNVNGTPDRLQFELGCAIDQFMVLFEDVKGTPEPDTNLPSGFG MVNLDNLRDHLEGSVPVNLERKHQNKVSQIFPPGIITMNNYVLPHTIQARARTLVNFK HIKVYAKALRNNISVLEQRLITKPETLLAYLLIRPESEKEISADLRAEFLTVIENLKF EVDERFFQYNNRLHEGLCVHE" exon complement(2987..4402) /note="large t antigen" /number=3 intron complement(4403..4732) /note="large t antigen, intron A" CDS complement(4544..4981) /codon_start=1 /product="small t antigen" /protein_id="AAB59761.1" /translation="MASLRRLTELLCLPVTATAADIKTAYRRTALKYHPDKGGDEEKM KELNTLMEEFRETEGLRADETLEDSDPEPEESGYATFENVSVPDIDGAFFKLMKLKKC MQTYFSVNERRKQDIRPEYFELFKAFQDVPWKVLEDFFTSEMF" exon complement(4637..4981) /note="large t antigen" /number=1 BASE COUNT 1296 a 1221 c 1197 g 1267 t ORIGIN 1 ggtatagctt ttttctctgt atagtgcact ggcatgccag agcgcgattt ataaaaacaa 61 gggaagtgct gagcaatcgt tacataacat gcattccaaa taagggaatg cggaaatcca 121 tacttgggac ttacataaca tgcattccat ataaggaata cggatatgcc catgtttgta 181 tccaaacagg cggtctccca gactccgcct atcgtcccat attacgtgcc gctccataaa 241 agggaggcgt acgtgacctt tttacaggat attacgccct agcaacagga tgtctactcc 301 agcgcgagat ccaaacacgg cgggcactgc ggtaagttcc cccatttaaa ttcaaatgtt 361 tgcgcgcgaa acgtaacaat gcctaacgga acgcctaccc taaacaggcc cttagcccgt 421 ttagcactcc gaatcacgag ctgcgcgcac cagggcctgg agaggctcat tcgcctttta 481 cacctactgc tgcacctggg tcgcagcctg ctggatctct ttcagaccct gaggacggcc 541 ctgacccaac cttcaacttc tatattcagg tatgtatgac ccatagaacc cccctgtcca 601 tacgtgtatg ggtatgctta tgtaccttta cagggacatc ggcgccgtcc ctatgaccgt 661 cagaaccgct tcgggaaact agaaagcgag attcgggaaa ccaaatccca attggagacc 721 ctgcgccagg aattaaagca tctgcaggca gacgtagatg atctgaagga gacagtgtat 781 gcggcaggca ctagcacggc aagcacttct gtccctcctt cacagcctaa ctcgcctacc 841 cctactgcta ccacccctga ggcttctcct gctgctccta ctaccgagtc caccgagaca 901 accggcccta gcgtcgcgac taacgcaacc gaaccgtccg aatcgcggcc ggctcgctaa 961 gtagctgcac taaggtatgg gagctatcat ttcggctata gctggtctgt tcgaactagg 1021 agcattgggt ggcctagcag tagatgctgc cgtaaataca gcagaaatag aagcattcat 1081 aggggaattg gtactgcagg actttagcgt tgctgaaata ttcgacgcta tagaaacaag 1141 tggtatacct ttagcgaata ccgctgtacc tgttgcagag ctacagcaaa cagcagcaac 1201 ttccgggttg attggacagg cgctaagtgc cccatccctg atagcggcgt cagtcaaggc 1261 ctttgcagga gaccccgtcg cagccggcaa caatatggcc ctacaggtct ggagagacca 1321 aatggacata ctctttccag gagcggaatg gttctcgaat gctgtacata atatcaatcc 1381 attagcatgg gcccaatcgt tgtatgaaca agtaggccaa agtatatgga actatatgac 1441 aggtaacatt gggcaagctg taatacatca aatcgaggag cgtacaacag ccctgattgt 1501 gtaccaaagt aggggtatat atgatatact tgctagagcg ttagaaaccg cacgttggac 1561 attaacaaca gcggccgtag atacatatca gacactaaaa agctactatg gtgagctacc 1621 ggctgtgtcg ggcagagttg aggcctttcg taggtatcac gaggtcgcac aaggacgtag 1681 cttctttgag gactcagata tacaagatgt attagagggt aaaaaggccc aaaaacgaat 1741 tgagggccca caggagatga caggccaaac catagaacag caaacccccc caggaggtgc 1801 aatgcaacga catgcaaatg actggttact ccctttgatt ctaggtctct acggggacct 1861 gactccagag tggcggtacc agcttaagga aaggctcaat gtcccaaaaa ggaaaaggaa 1921 gctgcccacg acctcagcag gtacctcgcc tcctagtaaa aggaggtata gaggtgttag 1981 acgtaaagtc aggtccagat agtataacaa ccatagaggc ataccttcaa ccgcggcctg 2041 gacaaaaaaa tggatactcc acagtaataa cagtgcaggc agaaggatac caggatgccc 2101 cccacagcac agaggtaccg tgttacagct gtgccaggat accgctcccc acgatcaacg 2161 acgacattac gtgcccgacc ctgcttatgt gggaggctgt cagtgttaaa actgaggttg 2221 ttggagtgtc tagtattctc aacatgcatt ctggggcttt ccgcgcattt aacggatacg 2281 ggggaggctt tactatttgt ggccctagga tccatttctt tagcgtgggt ggagagcctc 2341 tcgatttaca ggcatgtatg caaaattcaa aaactgtgta ccctgcaccc ctaattgggc 2401 ctggggaagg agaacgacgt gaaacagcac aggttctcga tacgggctac aaggcccgac 2461 tagataagga tggtctctac cccattgagt gctggtgccc agaccctgct aagaatgaga 2521 acactagata ttatggcaac ctcacaggtg ggcctgagac cccccctgta cttgccttca 2581 caaacactac aacgacaatt ctccttgatg aaaatggggt tggaccccta tgcaagggcg 2641 atggcttgtt cctctcagct gcagatgtgg caggtaccta cgttgaccaa cgtggccgcc 2701 aatattggcg aggcctacca cgctatttca gtatccagct gaggaaacgt aatgttcgta 2761 acccctatcc tgtatctggt ttgctaaact ccttgttcaa tgacctgatg ccccgtatga 2821 ctggtcaaag catgcagggc tctgatgcac aggtggagga ggttcgtgtg tatgagggta 2881 tggaagggct ggctcccgag attgacatgc cccccaaagc tccccgctaa atagactaga 2941 cgcacgatgt tttatatgcc actctgttta ttgcatgtaa ataaagctat tcatgaacgc 3001 ataagccttc gtgcagtcta ttattatatt ggaagaaacg ttcgtccact tcgaacttaa 3061 ggttttcaat taccgttaga aattcggccc tgagatcggc gctgatctcc ttttcacttt 3121 cgggcctaat caataggtat gccaagaggg tttccggctt cgttattagg cgctgctcca 3181 gcacactaat gttattacgg agcgccttgg catacacttt aatatgctta aagttaacca 3241 aagtacgggc gcgtgcctgt atggtatgtg gcaatacata attattcatg gtaatgattc 3301 ctggaggaaa tatttgtgac accttatttt ggtgtttccg ttcgaggttt acgggtacac 3361 taccttcgag atgatctcgc agattatcga ggtttaccat accaaagcct gaaggcaggt 3421 ttgtgtctgg ttcaggtgta cctttaacgt cctcgaacag aaccatgaac tgatcgatag 3481 cgcatcctag ttcgaattgc agtcgatcag gggtgccatt tacattcagg gatgcccctg 3541 tacacagtgc cagtatggca gcagccacgg tggtcttacc cgtattcact ggacctttaa 3601 atatatagta tcgccgcttc ggtgggtttt tcaccattgt ctgcaatata tcaacaatca 3661 catcaacatc tggaaataac atattgaaca acagtatagc tgttacaaaa tcatcaattg 3721 cctcagtttc accatctaag agttcctgaa tgttacgtag cacagtccgg aagcgttctt 3781 tgagacgctc atcccttgtc atggtcgctg accggaaacg tttttctgca agcacagcat 3841 ccacagcaca ttggcatagg cgtttttgat ccttgatgtg cagaaatagt gaggcgttgt 3901 gctggtgtcg tgggtggtcg tcgatatgtg tcgacctctt gcgcttcacc gtgtccttgt 3961 ccttctggca ctcgggacac ttatcggtgg gctgtgctaa tcgtttatat attgcaagta 4021 acaatagggc atcggtacag tcaatttgta ctgcatagtc atataacatt gcatgcataa 4081 attgcttttc gtccacaaca ttcatatcaa tactgcattc ctccaggtcc aggcctggca 4141 catctagcag ggttttaata agagcatgaa cacaattctt tttaatacca cgtacagaac 4201 atatcgaaat ggtacagtat tttttgcaaa agttatgcac cgtcgatata cgcgtcggtt 4261 tttctagctg aagcacgagc aacgcgatcc cagtccaatg cgcaacgata tgtcccttta 4321 tcccgaagtg ctcataaagg tgggccttaa gttgcggcat tttggtaatt gaggtaataa 4381 gcaagtggca atcagggcag ctctgcacgg agcgtggggt tagtaaataa gcatctacct 4441 ctgggggtag ctcatagtcg gtggtacccc tttttggggg tgtgctatac tgactatcct 4501 gagggttgtc atcctgagtt gtttgaggtt cggtgccctg taattagaac atttcacttg 4561 taaaaaagtc ctccagtacc ttccatggta catcttggaa ggccttaaac agctcgaaat 4621 attcaggcct tatatcctgt ttgcgtctct cgttaacgct aaaataggtt tgcatgcact 4681 ttttcagttt catgagttta aagaaggccc catcgatatc gggtacactt acattctcga 4741 aggtagcata gccgctctct tcaggttcgg gatcggagtc ctctagggtc tcatctgcac 4801 gtaggccttc ggtctcacgg aattcctcca tgagggtatt caattccttc atcttttcct 4861 catcccctcc tttgtcggga tggtacttca gtgccgtgcg acgataggca gtcttgatat 4921 ctgcagccgt tgcggttaca ggtaggcaca ggagctcggt caatctgcgc aaagaagcca 4981 t //