LOCUS AH001484 5194 bp DNA linear HUM 01-AUG-2016 DEFINITION Homo sapiens cell surface glycoprotein gene, complete cds. ACCESSION AH001484 M13555 M13556 M13557 M13558 M13559 M13560 VERSION AH001484.2 KEYWORDS Ia-associated gamma chain; cell surface glycoprotein. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5194) AUTHORS O'Sullivan,D.M., Larhammar,D., Wilson,M.C., Peterson,P.A. and Quaranta,V. TITLE Structure of the human Ia-associated invariant (gamma)-chain gene: identification of 5' sequences shared with major histocompatibility complex class II genes JOURNAL Proc. Natl. Acad. Sci. U.S.A. 83 (12), 4484-4488 (1986) PUBMED 3459184 COMMENT On or before Aug 1, 2016 this sequence version replaced M13555.1, M13556.1, M13557.1, M13558.1, M13559.1, M13560.1, AH001484.1. FEATURES Location/Qualifiers source 1..5194 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" /tissue_type="liver" exon 1..920 /note="Ia-associated gamma chain" /number=1 CDS join(796..920,1060..1232,1424..1503,2059..2121,2945..3040, 3356..3443,4347..4409,4552..4562) /note="Ia-associated gamma chain" /codon_start=1 /product="cell surface glycoprotein" /protein_id="AAA36033.1" /translation="MHRRRSRSCREDQKPVMDDQRDLISNNEQLPMLGRRPGAPESKC SRGALYTGFSILVTLLLAGQATTAYFLYQQQGRLDKLTVTSQNLQLENLRMKLPKPPK PVSKMRMATPLLMQALPMGALPQGPMQNATKYGNMTEDHVMHLLQNADPLKVYPPLKG SFPENLRHLKNTMETIDWKVFESWMHHWLLFEMSRHSLEQKPTDAPPKESLELEDPSS GLGVTKQDLGPVPM" intron 921..>922 /note="Ia-a" /number=1 gap 923..1022 /estimated_length=unknown intron <1023..1059 /note="Ia-a; putative" /number=1 exon 1060..1232 /number=2 intron 1233..1423 /note="Ia-a" /number=2 exon 1424..1503 /number=3 intron 1504..2058 /note="Ia-a; putative" /number=3 exon 2059..2121 /number=4 intron 2122..>2161 /note="Ia-a" /number=4 gap 2162..2261 /estimated_length=unknown intron <2262..>2819 /note="Ia-a" /number=4 repeat_region 2262..2395 /note="Alu-type repeat" /rpt_family="Alu" gap 2820..2919 /estimated_length=unknown intron <2920..2944 /note="Ia-a" /number=4 exon 2945..3040 /number=5 intron 3041..3355 /note="Ia-a" /number=5 exon 3356..3443 /number=6 intron 3444..>4161 /note="Ia-a" /number=6 gap 4162..4261 /estimated_length=unknown intron <4262..4346 /note="Ia-a" /number=6 exon 4347..4409 /number=7 intron 4410..>4418 /note="Ia-a" /number=7 gap 4419..4518 /estimated_length=unknown intron <4519..4551 /note="Ia-a intron G (no splice consensus at 33); putative" exon 4552..>5148 /note="Ia-associated gamma chain" /number=8 regulatory 5143..5148 /regulatory_class="polyA_signal_sequence" BASE COUNT 1053 a 1399 c 1201 g 1041 t ORIGIN 1 cggatcagac ttgactgttc ccatacattc accttcccac atttccagcc ctttggaacc 61 ctgaagatat cctcttctct gtcctgtcac tctatgggac ttacggctct ttgttaaaat 121 actatttaag caaggcccct aagccactgc cttgagagag aaatacttct caactgaggc 181 ctctactgca taatgggtac agcatgggtt aatcaacttt ggctgatttt tcttttgtta 241 agttgacttt tgtttctaag ggagcgtgtc aactaagaac ctaaacaggg aaggaaagga 301 aatgttttca cccctgcacg tcgtccaaac ttcctcctgc gtgtttgaga cgacataacg 361 gaggccagag aagaggactt gtctgagctc accaagggtg cacagcccct ttctgcaccc 421 actcatctgt ggatgagaaa ggggagacaa acaaaggtgt cttctgtttc aaagtgcttt 481 cctgtcttgg gagtggacat ttgccttttt cttgaaacat tcaaagagcc ttatgaatcc 541 aaaggcctgc ccagaaacaa gtgatgaggg ccttgggccg ccaatggggt cgtgctggcc 601 tttccacctt gcttggggag cccccccgcc ccacaccttg ccccgcaaaa ggcagttcca 661 ccaaagtggg gtatttccag cctttgtagc tttcacttcc acatctacca agtgggcgga 721 gtggccttct gtggacgaat cagattcctc tccagcaccg actttaagag gcgagccggg 781 gggtcagggt cccagatgca caggaggaga agcaggagct gtcgggaaga tcagaagcca 841 gtcatggatg accagcgcga ccttatctcc aacaatgagc aactgcccat gctgggccgg 901 cgccctgggg ccccggagag gtnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 961 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1021 nnggatcctc ctctgaccta tcctccccac ctcccacagc aagtgcagcc gcggagccct 1081 gtacacaggc ttttccatcc tggtgactct gctcctcgct ggccaggcca ccaccgccta 1141 cttcctgtac cagcagcagg gccggctgga caaactgaca gtcacctccc agaacctgca 1201 gctggagaac ctgcgcatga agcttcccaa gcgtgcgtgc acccctacat ccttgatacc 1261 ccccacctcc caccatccct caactcagag acccgcatcc ctgcacccag ctgggcccat 1321 gtcctctccc tccggtttgg aattccagcc cttcctcatc tgggtctgat accctcctcc 1381 ctgggcaccg gggccacact taccctcgtt cctgtcccca cagctcccaa gcctgtgagc 1441 aagatgcgca tggccacccc gctgctgatg caggcgctgc ccatgggagc cctgccccag 1501 ggggtaagga cagccccagg gtggtgggag gggcaaggtt atcccgcctg gatggaggac 1561 agtgccaagg ggagggggag ggaagagagc ccacctcggg aggggtcctg actgctgcgg 1621 gagggacagt gcctgcctca ggaagaatcg ggctccccag gtgtggaggg cacaggtgaa 1681 gagtctcttg gtgccatccc tggaggaagg ctcagccctc tacagtttac aaagtgcttc 1741 tcatttccta tagcatctca ctgtcctctc ccattctcaa agaccttgct atcatgcatt 1801 gacaatattt atattcacaa tactgtgctg tggacaaaac cctgggcggg aaagcttatg 1861 ccagtttgac caatgaggac attgaggcag gaagctaaag tgacttgctc gagctctatg 1921 tttggaggtg gcagaggtgg aaccattgac caagtgcccg cgattccagt ctctatccag 1981 atcccagcaa ccggctcctg ctccataccc cctgctcagg gaccagctct ggtaaccttc 2041 tgttagctcc tcccacagcc catgcagaat gccaccaagt atggcaacat gacagaggac 2101 catgtgatgc acctgctcca ggtgagtgca gggagctagc tgggtggtcc tgcctgcccc 2161 annnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2221 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn naggcaggag aatcgcttta 2281 acccgggaag tggaggttgc agtgagccga gatcatcacg ccactgcact ccagcctggt 2341 gacagagtga gactccattt caaaaaataa aataaaataa aaataaaaaa agaaactgag 2401 gctcaaagtt tggaagtgac ttgctcaaga cacccttttt ttctccccaa atttgtactg 2461 cgtgtctgtc ctatgccagc actgtgcaag gctctgggcc cacaatgggg agcaattgga 2521 cccagctcct gaagccatgg gatcctaggc tactgtggga gacagacaag tgactaggtg 2581 atgacagaag tgcagggggc tttgtgaaga aagaggcaga ggactcgacc tagctggggg 2641 cagtcaaggt tgggtcctca cctgctggag caggtaagac ctgaaagctg agcagccatc 2701 cacagggagg acactggggc ttgttggtga gctggcttgg aatctggaac tcagctcgca 2761 acgctgcagt ctcgtagctg aacagctgga ctaccttacc cgtaccctcc ctccctcccn 2821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2881 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnc cttccttgcc ctgctaccct 2941 gcagaatgct gaccccctga aggtgtaccc gccactgaag gggagcttcc cggagaacct 3001 gagacacctt aagaacacca tggagaccat agactggaag gtcagcaggt ttccctgcat 3061 gggaactctc tctttcctct ggtgtctagg gcagggctag gagaggtggg gtgagggtgg 3121 gctggggaag ccattctcag gaagctgaag gggtttacca ggacttccaa aacttggatg 3181 ctgcagagta tgtggggttc agccctaggg gtctttaaga ggaactaggc tgcagctgga 3241 cccgggtgtt ggggccctat ttggcccgca tgtttctgcc ctaggggaca aagctaggca 3301 gtgtaggggc ttggtggtgg ccatcgaacc tgacctccac ctctatccgt attaggtctt 3361 tgagagctgg atgcaccatt ggctcctgtt tgaaatgagc aggcactcct tggagcaaaa 3421 gcccactgac gctccaccga aaggtacagg gagtgggagc tttagcgtgc cagggcttct 3481 ggaccctcgg ggctctccgg aagctgcgga ggccggggcc tccagcactc cctagtccca 3541 gcacccgcgg ctcctatcct ctcagctctc acttctttct cacttctctc tctctcctgt 3601 ctgttccttc tttggtttgg ctgtccccct cccctgaccc accccatctt gtctaagggt 3661 tcctaagggc ccacagaggc ctgtcaccac agggtacagg tgacctctct catagaggat 3721 ggtacagcac agggtactgg ggtagaacct gcccgaaaca ctgcagaaag gaatccttgt 3781 aatgaccttg cccccagtgc tgcccgcaat ccagtagggc gccaaggcac agctgctgcc 3841 aagagagcct tgggcgtttc ccacctcatg gacaatgcag accaggatgt ttttagaccc 3901 aaagacagag tgctgtttct atcccggtgc tgtctctaat ttgctatgta actttggaca 3961 agtccccttc cctctaggat tcagggtcct gaagtagaag gtcaaagggc caccctgcct 4021 ggggcctcag tttctgcatc agattcatag aaggcacctt acatgctatc tccaactcct 4081 agctgatgct taaacccctc taagacatct ccaacaaacg gtaaacccca tttctacttg 4141 agaactccca gtaacaggaa gnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4201 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4261 nctaggtggg aagcactgcc ctcaggcact cttgggtcag gtaggctgca cttcaagtga 4321 caaacggact tgctgctcct ttgcagagtc actggaactg gaggacccgt cttctgggct 4381 gggtgtgacc aagcaggatc tgggcccagg tcacagtgnn nnnnnnnnnn nnnnnnnnnn 4441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4501 nnnnnnnnnn nnnnnnnnac cccaacctca acccgccgct tctctctcca gtccccatgt 4561 gagagcagca gaggcggtct tcaacatcct gccagcccca cacagctaca gctttcttgc 4621 tcccttcagc ccccagcccc tcccccatct cccaccctgt acctcatccc atgagaccct 4681 ggtgcctggc tctttcgtca cccttggaca agacaaacca agtcggaaca gcagataaca 4741 atgcagcaag gccctgctgc ccaatctcca tctgtcaaca ggggcgtgag gtcccaggaa 4801 gtggccaaaa gctagacaga tccccgttcc tgacatcaca gcagcctcca acacaaggct 4861 ccaagaccta ggctcatgga cgagatggga aggcacaggg agaagggata accctacacc 4921 cagaccccag gctggacatg ctgactgtcc tctcccctcc agcctttggc cttggctttt 4981 ctagcctatt tacctgcagg ctgagccact ctcttccctt tccccagcat cactccccaa 5041 ggaagagcca atgttttcca cccataatcc tttctgccga cccctagttc cctctgctca 5101 gccaagcttg ttatcagctt tcagggccat ggttcacatt agaataaaag gtagtaatta 5161 gaacactctg gttcctgccc tttctgttga gaga //