LOCUS LJ598677 3428 bp mRNA linear TSA 19-MAR-2016
DEFINITION TSA: Solenopsis invicta mRNA, contig: c62036.graph_c0_seq3.
ACCESSION LJ598677
VERSION LJ598677.1
DBLINK BioProject:PRJDB4088
Sequence Read Archive:DRR042171, DRR042172, DRR042173, DRR042174,
DRR042175, DRR042176
BioSample:SAMD00035829, SAMD00035830, SAMD00035831, SAMD00035832,
SAMD00035833, SAMD00035834
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Solenopsis invicta (red fire ant)
ORGANISM Solenopsis invicta
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita;
Aculeata; Formicoidea; Formicidae; Myrmicinae; Solenopsis.
REFERENCE 1 (bases 1 to 3428)
AUTHORS Mikheyev,A.S., Morandin,C. and Grau,M.
TITLE Direct Submission
JOURNAL Submitted (11-AUG-2015)
Contact:Alexander Mikheyev
Okinawa Institute of Science and Technology, Ecology and
Evolution; 1919-1, Tancha, Okinawa 904-0495, Japan
REFERENCE 2
AUTHORS Morandin,C., Tin,M.M.Y., Abril,S., Gomez,C., Pontieri,L.,
Schiott,M., Sundstrom,L., Tsuji,K., Pedersen,J.S., Helantera,H.
and Mikheyev,A.S.
TITLE Comparative transcriptomics reveals the conserved building blocks
involved in parallel evolution of diverse phenotypic traits in ants
JOURNAL Genome Biol. 17, 43 (2016)
COMMENT ##Assembly-Data-START##
Assembly Method :: Trinity v. r20130225
Sequencing Technology :: Illumina HiSeq 2000
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3428
/db_xref="taxon:13686"
/dev_stage="adult"
/mol_type="mRNA"
/note="contig: c62036.graph_c0_seq3"
/note="polygynous"
/organism="Solenopsis invicta"
/tissue_type="whole body"
BASE COUNT 1197 a 514 c 617 g 1100 t
ORIGIN
1 cgatctattg cgcgcgttcg atcagcaaag gtccagtcct ccttccgccc ctccttcctt
61 cagctgctgc ggtacaaagt ctggatcgtc aaaatttcat tgctcggttt gcatgaagcg
121 cacgtcacga tagcgcaagg tgcatcacaa caaggacgag ccaaccgcga acggcgaaga
181 agtaccaagg aatccaatag atatggcatt tcgtgaatta gtggaagggg actgtggagg
241 ttccaactct ctgatacgtc tcacgtcgca ttacgtgcaa gatcatggcc tcaaagatga
301 aggaattcgt cgaccgttta cttcgtcaga atctttccaa acaccggacg cagatcagtt
361 ggcccaacag ttcttggagg aacctgcttg tccacagaca tttcgaatgg acaatttatt
421 gcaggagatg agggaaattg atcagagtat tcacatccca aaaactggac ctgaatttct
481 aaaggaattg cagaatgact tggacaaagc atggaagagt ccttatgtaa cacataccga
541 acctttaaat gaccatcaag tgaacgagat atggaatgca tgtgtaccta ctcaagagga
601 aggtgtgcat ttagacagga atcatgaact tgggttggat ccaaaatggg cagaagattt
661 tctagaatgt aataccgatt ccatacagaa caatgctaaa agtaatattg ctcaatccgt
721 agaagatgaa gatccaaatt ttacatattc aaagtttatg aaatttatgg aacgagaagg
781 tgacattcca atagaaagta accaaacgac gatcaactta aatagtgatg aggaatggat
841 agaacaattt atagaaaata atgataatct cttgaacagt aacaataaag aagaagtctt
901 gaataaagta gaagaggaat tggaagctgc gggttcatgg ataagagaat ttgaaaagga
961 aaatcctcct gcagaaggca atatggagtc attgtggaag cgatttcaag acgaatggga
1021 taagatttct gcaaatgaag tttcctctgc acacccgtgg gtatcagaat tcgatacata
1081 ttatgatcca tttaataagg aatatgattt ttctgagaca aatcctatga aagatttgcc
1141 aaatgccttg gaagaaggca agagacgatt agaagcagga gatttaccaa gtgctgtact
1201 ctgttttgaa gctgccgccc aacaggatga aaataacatc gaagcctggt tactccttgg
1261 caaaacacaa gctgaaaatg agcaagaccc ttcggccatt tctgctttaa atcgttgtct
1321 atgcttggat ccgtcaaata gcgttgctct catggcgtta gcagcttctt atgcaaatga
1381 atcttatcaa aagcaagcct gcctaacatt aaaggaatgg ttactaaaga atgaaaaata
1441 taaacatctt gcacaaggtc cagaatctaa tctgaaaaaa gatgaacatc caaatttcag
1501 cgtatctact ttattatatg acaaggtata cgatgaagtt aaagatctgt atattcaagc
1561 cgcgaggatg aatcctcatg atgaaattga tgcagatgta cagtgtggat taggtatatt
1621 atttaattta tcgaacgatt ataacaaagc tgtggattgt ttccaagcag cattgcaagt
1681 gcgtcctgat gtaagtgtac tctatttctg ttgtaattaa accaatacac atttaactaa
1741 tatgtggaaa catcttctcg aaaggattcc agattgtgga atagattggg tgccacttta
1801 gctaatggtc agcgatcggc ggaagctgta aacgcgtatc atcgtgcctt agaattatcg
1861 cctggattta ttagagcacg ttacaatcta ggcatttctt gtgttaatct tgcagcgtat
1921 aaagaggcag gcgagcatct tttaacagcg ttgaatcaac aagctgcagg aagaggccca
1981 caggctagca gtgtaccgcc taaagcaatg tcgaatacaa tatggtctac gttaagatta
2041 gttatatcat tgatgcataa atatgagtta atggaagcca tagaaaacag agatttgcca
2101 aggttaaaca aggaatttga aataatgtaa acgggcgcaa gtgcattcaa ggttcataca
2161 atggttcatt tttacatgga ttgttcagga atatatttgg gattacatag gtaatcaaca
2221 aaaaaatatt agaatgtttt ttttcgatat attctattta agctatttaa gcatttaagg
2281 tcatcatatg cacaaaaatt ttagttgtaa atgttaggct ataaatatat aaatatatta
2341 attaattata attcatcatt ttaaaatgta ataccgcaat ttttattatg attagtcgat
2401 ttgtttacaa tcttacggtt ataaaatatg aaatataaaa tataaaatta ttctttttgc
2461 aataagtttt ttacaatttt ttgtgatgct tgtagtatca ttgttaaatc tgacgatcaa
2521 attaaattta tatattatag atatattatt tctagcttca gtttatgatt gcatttaagt
2581 ccgacatgtc gatatgcaaa actgaaaatt gtatttaaca attgatataa aaatattgtt
2641 gagcatcaag atcaatttca ataaaaaata gcatttcttg ttatttcttt ttctttaaaa
2701 agtttactaa aattttttta tgtgtgatgg ccttttcaaa attaaattct agaatatttt
2761 agaacagggt ttctcccaaa tctgtatgga tcacgatcta ttattgggaa tccctatttt
2821 agacaaatgc ggaaaatgta tatactgaga gataacgttt aagatattgt tgaattattg
2881 cattttattg tattgattct tcaattttga tatcctgtat ataagaatat atataagaaa
2941 tataaaactg ggacgaatag ctcatttatt attaacacta caaataatta tgaataataa
3001 ttgaatagta ttttaaggca atttattata ctgctataaa aattgtcaaa atatcttaca
3061 ttcttaatat ctatttttgt ttttatacaa agtaaatata aataaatatt ttaaatatat
3121 tgcgcgcgaa acttttaaaa tattgtatca tatttatctc ttttaaaaat attttaatta
3181 ctcaaatttg aatcttacta tactattttt agaatttgta cttattacaa attttattgt
3241 catattgata ttattgtaac attgcacatt aatacaaatt taaaaattta taattagaac
3301 ttaaaattag aaattaattt tttattaata gttttaattg taattattga ttactatgtc
3361 agggataaca atcaaagata acatatggga taaaaaaaca attgttaggt tattatgtat
3421 ttattttt
//