LOCUS CVNCCMF 2117 bp DNA linear BCT 24-JUL-1996 DEFINITION Chromatium vinosum ccmF gene, 3' end of cds, ccmG gene, complete cds, orf40 gene, 5' end of cds. ACCESSION L78437 VERSION L78437.1 KEYWORDS ccl1 gene; ccmF gene; ccmG gene; cytochrome c biogenesis; helX gene; heme ligation; homologue; thioredoxin. SOURCE Allochromatium vinosum DSM 180 ORGANISM Allochromatium vinosum DSM 180 Bacteria; Pseudomonadota; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium. REFERENCE 1 (bases 1 to 2117) AUTHORS Chen,Y.L. and Knaff,D.B. TITLE Characterization of the ccmF and ccmG genes involved in c-type cytochrome biogenesis in Chromatium vinosum JOURNAL Unpublished COMMENT This work was done at the Department of Chemistry & Biochemistry, Texas Tech University. Tel: 1-806-742-3067 E-mail: knaff@ttacs.ttu.edu FAX: 1-806-742-1289. FEATURES Location/Qualifiers source 1..2117 /organism="Allochromatium vinosum DSM 180" /mol_type="genomic DNA" /strain="D" /type_material="type strain of Allochromatium vinosum" /db_xref="taxon:572477" gene 1..1446 /gene="ccmF" CDS <1..1446 /gene="ccmF" /function="protein involved in c-type cytochrome biogenesis" /experiment="experimental evidence, no additional details recorded" /note="similar to Rhodobacter capsulatus ccl1 gene, Bradyrhizobium japonicum cycK gene, Rhizobium leguminosarum cycK gene, and Rhizobium meliloti cyc K gene" /codon_start=1 /transl_table=11 /protein_id="AAB04630.1" /translation="GYVGFSVAFAFAIAALIGGKLDAAWARWSRPWTTVAWVFLTIGT ALGSWWAYYELGWGGWWFWDPVENASFMPWLVGTALIHSLAVTEKRAAFKNWTVLLAI STLSLSLLGTFLVRSGVLTSVHALATDPTRGSFILLFLCVVIGGSLALYACARDDLRR RALRSLSRETLLLINNLLLTNVTVLVLFGTLAPLIYEAAGWGKISVGLPWFNKMFVAL SPLLILATAIGPLVHWKHDVSLALVRALWIAWVGIAAVLTVSLPGMSADQMATGFGVG MAVWLAASHLVSLFDRLKHKGGLRGLKADLTGNSRGYYGMWLAHMGLAVFIVGVTMVS IHGEETDVRMSPGPHEASGYRFQFNGVTAIPGPNYQAFRGDFVVVYRGEREYARFYPE KRKYVSGGMPMTEAAIDAGFLRDIYLSLGDPVGVQGDWALRLYHKPYVRWIWLGCILM AIAAHLAPTDRRYRTVRQTATVPTDVALAKA" gene 1445..1954 /gene="ccmG" regulatory 1445..1450 /regulatory_class="ribosome_binding_site" /gene="ccmG" /note="putative" CDS 1457..1954 /gene="ccmG" /function="involved in the periplasmic step of c-type cytochrome biogenesis, probably in the reduction of cysteine residues" /experiment="experimental evidence, no additional details recorded" /note="similar to Rhodobacter capsulatus helX gene, Bradyrhizobium japonicum tlpB (cycY) gene, Pseudomonas fluorescens tipB gene, and E. coli ccmG gene; thioredoxin-like protein" /codon_start=1 /transl_table=11 /protein_id="AAB04631.1" /translation="MNTSAKRALIPLGSFWPWALLFYGLQLDPRKIPSPLVDKPAPEF SLPDLKDPNQTLTRDILIGQVSLVNVWASWCPSCRQEHAELMRIAREHGVRVIGFNWK DTRPEALALLQRYGDPYTVSLYDPDNKAGIDWGVYGAPETFIVDAEGIIRHKRVGPID AQVWA" regulatory 1985..1991 /regulatory_class="ribosome_binding_site" /note="orf40; putative" CDS 1996..>2117 /experiment="experimental evidence, no additional details recorded" /note="orf40" /codon_start=1 /transl_table=11 /protein_id="AAB04632.1" /translation="MIRTQTQSLVAALTLAGALLTTARTPSPWKSSPSRIRRAP" BASE COUNT 308 a 739 c 657 g 413 t ORIGIN 1 ggctatgttg gcttctcggt cgcctttgcg tttgccatcg ccgcgctgat cggcggcaag 61 ctggatgcgg cctgggcgcg ctggtcgcgg ccctggacca cggtcgcctg ggtgttcctg 121 accatcggca ccgcgctcgg ctcctggtgg gcctactacg aactcggctg gggcggctgg 181 tggttctggg atccggtcga gaatgcctcc ttcatgccct ggctggtcgg caccgcgctg 241 atccactcgc tggccgtgac cgagaagcgc gccgccttca agaactggac ggtgctgctg 301 gcgatctcga ccttgtcgct ctccttgctc ggcaccttcc tggtgcgctc gggcgtgctg 361 acctcggtcc acgccttggc caccgacccg acgcgcggca gcttcatcct gctgttcctg 421 tgcgtggtca tcggcggttc gctcgcgctc tatgcctgcg cgcgcgacga tctccggcgg 481 cgggcgcttc gatcgctctc gcgcgagacc ctcctgctca tcaacaacct gctgctgacc 541 aacgtcacgg tgctggtgct gttcggtacg ctcgccccgc tgatctacga ggcggctggc 601 tggggcaaga tctcggtcgg ccttccctgg ttcaacaaga tgttcgtcgc cctgtcgccg 661 ctgctgatcc tggccacggc catcgggcca ttggtgcact ggaagcatga cgtaagcctg 721 gcgctggtgc gcgcgctctg gatcgcgtgg gtcgggatcg cggccgtcct caccgtctcg 781 ctgccgggta tgtccgccga tcagatggcg accggattcg gtgtcggcat ggcggtgtgg 841 ctggctgcgt ctcatctggt cagcctgttc gaccggctca agcacaaggg cggactgcgc 901 ggtctcaagg ccgatctcac cggcaacagt cgcggctatt acggcatgtg gctggcgcac 961 atgggactgg cggtcttcat cgtcggcgtg accatggtct cgatccacgg cgaagagacc 1021 gacgtgcgta tgtcgcccgg cccacacgag gcctccggct atcgcttcca gttcaacggc 1081 gtgaccgcca tccccggccc caactatcag gcgttccggg gcgacttcgt cgtcgtctat 1141 cgcggtgagc gcgagtacgc ccggttctat cccgagaagc gcaaatatgt ctcaggcggg 1201 atgcccatga ccgaggcggc catcgacgcc gggttcctgc gcgacatcta tctctcgctc 1261 ggcgacccgg tcggcgtcca gggcgactgg gccttgcgcc tctatcacaa accctatgtg 1321 cgctggatct ggctcggctg catcctgatg gccatcgcgg cgcacctggc cccgaccgac 1381 cggcgttatc gtaccgtccg ccagacggca accgttccga ccgacgtcgc tctggccaag 1441 gcttgaagga ccgatcatga acacctctgc caaacgcgct ctcatcccgc tcggatcttt 1501 ctggccctgg gccctgctct tctacgggct gcaactggac ccgcgcaaaa tcccctcgcc 1561 gctggtcgac aaaccggcgc ctgagttcag cctgcccgat ctcaaggatc ccaaccagac 1621 tctgacccgt gacatcctca tcggtcaggt gtcgctggtg aacgtctggg cctcctggtg 1681 cccgtcctgc cgccaggaac acgccgaact catgcgtatc gcgcgcgagc acggtgtgcg 1741 cgtgatcggc ttcaactgga aggacacccg gcccgaggca ctggccttgc tccagcgcta 1801 tggtgatccc tatacggtct ccctctatga cccggacaac aaggccggga tcgactgggg 1861 cgtctatggc gcacccgaga ccttcatcgt cgacgccgag ggcatcatcc gtcacaagcg 1921 ggtcgggccg atcgacgccc aagtctgggc ctaggagatc cagcccatcg tcgcgcgcta 1981 ccaaggaggc aaaccatgat ccggactcag acccagtcgc tcgtggccgc gctgacgctg 2041 gccggcgccc tgctgacgac cgctcgcacg ccttcaccct ggaagagttc accttcgagg 2101 atccggcgcg cacccag //