LOCUS ECOAMYAP 5160 bp DNA linear BCT 30-NOV-1995 DEFINITION E.coli alpha-amylase (amyA) gene, 3' end; Orf15, Orf48, Orf9, Orf8, complete cds; and flagellar basal body protein (fliE) gene, 3' end. ACCESSION L13279 VERSION L13279.1 KEYWORDS alpha-amylase; amyA gene; flagellar basal body protein; fliE gene. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (sites) AUTHORS Muller,V., Jones,C.J., Kawagishi,I., Aizawa,S. and Macnab,R.M. TITLE Characterization of the fliE genes of Escherichia coli and Salmonella typhimurium and identification of the FliE protein as a component of the flagellar hook-basal body complex JOURNAL J. Bacteriol. 174 (7), 2298-2304 (1992) PUBMED 1551848 REFERENCE 2 (sites) AUTHORS Raha,M., Kawagishi,I., Muller,V., Kihara,M. and Macnab,R.M. TITLE Escherichia coli produces a cytoplasmic alpha-amylase, AmyA JOURNAL J. Bacteriol. 174 (20), 6644-6652 (1992) PUBMED 1400215 REFERENCE 3 (bases 1 to 5160) AUTHORS Raha,M., Kihara,M., Kawagishi,I. and Macnab,R.M. TITLE Organization of the Escherichia coli and Salmonella typhimurium chromosomes between flagellar regions IIIa and IIIb, including a large non-coding region JOURNAL J. Gen. Microbiol. 139 (Pt 7), 1401-1407 (1993) PUBMED 8371104 COMMENT Original source text: Escherichia coli (strain JA11) DNA. FEATURES Location/Qualifiers source 1..5160 /organism="Escherichia coli" /mol_type="genomic DNA" /db_xref="taxon:562" gene 1..67 /gene="amyA" CDS <1..67 /gene="amyA" /function="cytoplasmic alpha amylase" /standard_name="AmyA protein" /experiment="experimental evidence, no additional details recorded" /citation=[2] /codon_start=2 /transl_table=11 /product="alpha-amylase" /protein_id="AAA82575.1" /translation="GEATFFCNGGSVSVWVIEEVI" CDS complement(101..514) /experiment="experimental evidence, no additional details recorded" /citation=[2] /codon_start=1 /transl_table=11 /product="Orf15" /protein_id="AAA82576.1" /translation="MKKLAIAGALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQ RALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERD GNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP" CDS 701..1906 /note="level of amino acid identity between E. coli and S. typhimurium strongly suggests authentic gene; putative" /codon_start=1 /transl_table=11 /product="Orf48" /protein_id="AAA82577.1" /translation="MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGE FTRWGGQLLQLFGVHAEEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVK LRMPRSRIRIMQAIIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSW FGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQ PKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYV QLGVEPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGS TILAYYWDDFAPALATDWDKINLLKTFGPMGGLLVTYLLLFAALMLIIGWEKRFFRRA APQTAKEIA" CDS 1903..2136 /note="level of amino acid identity between E. coli and S. typhimurium proteins strongly indicates authentic gene; putative" /codon_start=1 /transl_table=11 /product="Orf9" /protein_id="AAA82578.1" /translation="MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCP QSINNIPLDARNHGYTVLDIQQDGPTIRYLIQK" CDS 2249..2464 /note="lacking in S. typhimurium; putative" /codon_start=1 /transl_table=11 /product="Orf8" /protein_id="AAA82579.1" /translation="MDALPNPKRVKITLRFSRKILNAIFPMIPNPLADTTSRREPKSY CSVNVMNTFIWIRFSGDMLPDGGINRR" misc_feature 2465..5123 /note="This 2.7 kb stretch is non-coding by several criteria and (to the authors knowledge) is the largest yet described for E. coli; putative" /citation=[1] /function="noncoding" gene complement(5124..5160) /gene="fliE" CDS complement(5124..>5160) /gene="fliE" /standard_name="FliE protein" /experiment="experimental evidence, no additional details recorded" /citation=[1] /codon_start=2 /transl_table=11 /product="flagellar basal body protein" /protein_id="AAA82580.1" /translation="AAYQEVMSMQV" BASE COUNT 1309 a 1228 c 1191 g 1432 t ORIGIN 1 cggcgaagca accttctttt gcaacggcgg cagcgtcagc gtgtgggtta tcgaagaggt 61 gatttaaatt catccccggc ggcaagccgg ggagatttca ttacggcagt ggcgtcggta 121 acggcgcttt atccagcgcg gcggcacact ctgctgtcgg gcgatccaca cgctccatcg 181 tcataccatc gtactcaatg gtgttaccgt cacgctcaac ctcgtacagc tcacgtttta 241 cggtaacgtt agtgagatca tcagacatca atgtcaactt acccggcacg gcaatcaccc 301 gctgccactg acggcaatcc agggtatcgc cctctttagt gacaatcagg ctgcctatcg 361 cttccgggct gaccagcgca cgttgcggcc ctttggtctg ccagtagccc gccagccagt 421 ccggcgcggg ggttttcacg acattgttat agttttcgac ttcggcacag cccgccagca 481 acaagagcgc gcctgcaatt gcgagttttt tcatcattcg tcctgcatga gaagaaaaga 541 ggattgtggc attaaagccc tgatgtcgcc agcctttcaa ggttcagaga gaaatttgat 601 ctaactatta tttttgtgaa ttattacccc gaaaataaat ttgcatggtg tatgattcgc 661 gactcttgtt tcaaaccttc tgagttcaga ggctacattc atgtcatggc agcaattcaa 721 acacgcctgg ttgattaaat tctgggcccc catccctgcg gtcatcgcgg cgggtattct 781 ctctacttac tattttggca ttactggcac cttttgggct gtcacgggtg aatttacccg 841 ttggggcggc cagctcctgc aactgttcgg cgtccatgct gaagagtggg gttactttaa 901 aattatccat ctggaaggat cgccattaac ccgcatcgac gggatgatga tcctcggtat 961 gtttggcggc tgctttgccg cagcgctgtg ggccaacaat gtcaaactgc gaatgccgcg 1021 cagccgtatc cgcattatgc aggccatcat tggcggcatt atcgccggtt ttggcgcgcg 1081 tctggcaatg ggctgtaacc tggcggcgtt ctttaccggt attcctcagt tctcgctgca 1141 tgcctggttc tttgccatcg ccactgccat tggttcatgg tttggcgcgc gctttaccct 1201 gctgcccatc ttccgtattc ccgtgaaaat gcagaaagtt tctgccgcct caccgctgac 1261 gcaaaaaccg gatcaggcgc ggcgtcgttt tcgtctcggg atgctggtct ttttcggcat 1321 gctgggctgg gcgctgctca cagcgatgaa ccaacccaaa ctggggctgg caatgctgtt 1381 tggcgtcggc tttggtttac tgattgaacg tgcgcaaatc tgctttactt cagcgttccg 1441 cgatatgtgg atcaccggac gtacccatat ggcgaaagca atcattatcg gtatggcggt 1501 gagtgccatc gggatcttca gttacgtaca gttaggcgtt gaacccaaaa tcatgtgggc 1561 gggaccaaac gcggtaattg gtggtttact gtttggtttt ggcatcgtgc tggctggcgg 1621 ctgcgaaacc ggctggatgt accgcgcggt agaaggccag gtgcactact ggtgggtcgg 1681 tctgggcaat gtgatcggct caacgattct ggcgtattac tgggatgatt tcgctccggc 1741 gctggccacc gactgggaca aaatcaacct gctgaaaacc tttggtccga tgggtggcct 1801 gctggtgaca tatttgctgt tgtttgctgc gctgatgttg attatcggct gggaaaaacg 1861 cttcttccgc cgtgcggcac cgcagactgc taaggagatc gcatgaaaaa tatcgttcct 1921 gattaccgcc ttgatatggt gggtgaaccc tgcccttatc cggcagtcgc aacccttgag 1981 gcgatgccgc agttaaaaaa aggggaaatc ctggaagtgg tgagcgactg tccgcagtcg 2041 atcaataata ttccactgga tgcgcgtaat cacggctata cggtgctgga tattcagcaa 2101 gacgggccga ccattcgtta tttaattcag aagtaatccc tcattcccgc tgtgacccac 2161 agcgggaaca tcgttacctt tgtatcacat agattttacc cgcccccact cctattcttt 2221 tcagtatgat ctcaggaggt ttctatgtgt ggacgctttg cccaatccca aacgcgtgaa 2281 gattaccttg cgcttctcgc ggaagatatt gaacgcgata ttccctatga tcccgaaccc 2341 attggcagat acaacgtcgc gccgggaacc aaagtcctac tgctcagtga acgtgatgaa 2401 caccttcatc tggatccggt tttctgggga tatgctcccg gatggtggga taaaccgccg 2461 ctgattaacg cccgcgtaga aactgcggca accagtcgta tgtttaaacc gctctggcaa 2521 catggtcggg caatctgttt tgccgatggc tggtttgagt ggaaaaaaga aggcgacaaa 2581 aaacagcctt tttttatcta tcgtgctgat ggacaaccta tttttatggc cgcgataggt 2641 agcacaccat ttgagcgtgg tgacgaagcc gaaggatttt tgatcgtcac tgctgcggca 2701 gatcaaggtc tggtagatat tcatgaccgc cgcccactgg tactgtcgcc agaagctgcg 2761 cgggaatgga tgcggcaaga gattagcggt aaagaagcct cagaaatcgc ggccagtggc 2821 tgtgttccag caaaccagtt ctcctggcac ccggtatcgc gcgcggtggg taatgttaaa 2881 aaccagggcg cggagttaat tcaacctgtt tgataagcct ggagattatt gatcaacaat 2941 actgcgtcat aagaaatctc tattagacaa agatttcatt acctgttggc atattgcaaa 3001 aataacacca atacggaatc gtcatgttca cgattaaaac agatgatctc acccatccag 3061 cagtgcaagc attagtggct taccatattt ccggcatgct gcagcagtct ccccccgaaa 3121 gcagtcatgc tttagatgtg caaaaattac gtaacccgac agtgacattc tggtcagtat 3181 gggaaggcga acaactcgca ggaattggtg cgctgaagtt gctggatgat aaacacggcg 3241 agctgaaatc aatgcgtacc gcgccaaatt atttacgtcg tggtgtcgcc agtctgattt 3301 tacgccacat tttgcaggtc gcccaggaca gatgccttca tcgcctgagc ttagaaacgg 3361 gtacacaggc tggatttacg gcctgccatc aactttattt gaagcatggt ttcgctgatt 3421 gcgaaccgtt tgctgattat cgacttgatc cacacagtcg atttttatca ttgacgctat 3481 gcgaaaataa tgaattgcca tgagccagac gcagcacatt cttgcattcg acgtgctgcg 3541 cctttattta tcaccagcag gaaacgcctt gtccatagac gccccttcca catgcgccac 3601 aagaaacctc tattccagtg acacaattgc gcctaattaa ttacatttaa tatttaatta 3661 tgagttcctc accatctatt acatactttt taaccatatc ggaatattta tcataatcag 3721 cgggattcgt aacaatatat tttcgctgcg atctttcata gcaaatccct gtcaaagtcc 3781 atgatataaa aatgtctctt caaaagaatt acattcttta aaaagtaatt ctttattgct 3841 atatatcgca gagacaacct caatatcaca ctccatacgt gctttctcca gatgatttgg 3901 gaagtattga atttctttta tcttattatc gccacaatta aacagcttag tagtctcagg 3961 cattgctggt atttaccata ttttattgcg ataaatagaa attgtcatag cctttgacgg 4021 agatgagtca acacgcgata tcagattatt atctacggag acctgggtaa ttccatcgga 4081 tacttttgga aataccatat aattattgaa atcgagctct aattctttgc agaatttggg 4141 aatttgtatt gtggcaaggc cattatgacg aagataaagc acctcaatcc aggatggaag 4201 aggtggcaaa gaccccaagt gaagatctgt taagtcaagt ttactattgt ggagttcaac 4261 acatttaaac aatctcacca atgctatatc cacatttttt ttgaagtcat tcgatgcgcc 4321 ttcttttact gaattagccc agtcgctgaa acctttgcaa agtctggaat ctgtaatttt 4381 cgtaaagttg tctagaaact ctgcaatatt agtcgatata aactctaatt tatgccgaat 4441 gggtgggtta ccagttccct gattttttct atcatgataa aacctatctt attataaatc 4501 gagaaatctt gaaaccagag actataatca ccccattcga aatattctga gtgcaataac 4561 ttaaattctg acagcatatt aaataatttg ctgtcttcac taattggtgt aaacttacca 4621 tttccaagac aactgactaa ctcacttgat aattcattta tgattgcatc atcagatact 4681 aactcatgtt gttttatcgt agattcagta ttagatgtga ctttatttaa ttgaaccggc 4741 tgagttttta acgaaagatc atttaatgga aacatttaca ctcctgttta ataaattata 4801 ttgcccaggg cgcattctaa aacacaataa aattaccact atcaaaaatc gctcatatcc 4861 atcgcccgga atatgaataa aaacatcaac aaagattaaa ttatccagag gttactgttg 4921 cgtctgtggt cgtaacaaca tccgacgtgg tgatgtgtca aatgagacgc tctgatgttc 4981 aggggggtta tcgcgtatac ggatcgtgga tggcagaaaa cgttcaggat caggtatcca 5041 ttttaaacca gaaattgagt gagtttgccc catccatgcc ccacgcggtg agatcggatg 5101 taattaacaa caggttacaa aacctacacc tgcatgctca tcacttcctg atacgccgcc //