LOCUS AH001057 5048 bp DNA linear INV 01-AUG-2016 DEFINITION Drosophila melanogaster tropomyosin gene, complete cds, alternatively spliced; tropomyosin isoform 9D, tropomyosin isoform 33 (9C), tropomyosin isoform 34 (9B), tropomyosin isoform 9A, and tropomyosin isoform 9E genes, complete sequence; and tropomyosin gene, complete cds, alternatively spliced. ACCESSION AH001057 K02620 K02621 K02622 K02623 L00355 L00356 L00357 L00358 L00359 L00360 L00361 L00362 L00363 M12840 M13023 VERSION AH001057.2 KEYWORDS alternative splicing; tropomyosin. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 2032 to 2765; 2866 to 3662; 3951 to 4843; 4944 to 5048) AUTHORS Karlik,C.C., Mahaffey,J.W., Coutu,M.D. and Fyrberg,E.A. TITLE Organization of contractile protein genes within the 88F subdivision of the D. melanogaster third chromosome JOURNAL Cell 37 (2), 469-481 (1984) PUBMED 6202423 REFERENCE 2 (bases 1 to 5048) AUTHORS Karlik,C.C. and Fyrberg,E.A. TITLE Two Drosophila melanogaster tropomyosin genes: structural and functional aspects JOURNAL Mol. Cell. Biol. 6 (6), 1965-1973 (1986) PUBMED 3097506 COMMENT On or before Aug 1, 2016 this sequence version replaced M12840.1, L00355.1, L00356.1, L00357.1, L00358.1, L00359.1, L00360.1, L00361.1, L00362.1, L00363.1, K02620.1, K02621.1, M13023.1, K02622.1, K02623.1, AH001057.1. FEATURES Location/Qualifiers source 1..5048 /organism="Drosophila melanogaster" /mol_type="genomic DNA" /db_xref="taxon:7227" intron <1..2 /note="tro intron A" CDS join(39..152,257..382,487..620,725..842,947..1056, 1161..1236,1341..1403,1675..1744,3765..3850) /note="tropomyosin isoform 9D" /codon_start=1 /protein_id="AAA28969.1" /translation="MDAIKKKMQAMKVDKDGALERALVCEQEARDANTRAEKAEEEAR QLQKKIQTVENELDQTQEALTLVTGKLEEKNKALQNAESEVAALNRRIQLLEEDLERS EERSASAIQLAAEASQSADESERARKILENRALADEERMDALENQLKEARFLAEEADK KYDEVARKLAMVEADLERAEERAMVEADLERAEERAEQGENKIVELEEELRLVGNNLK SLEVSEEKANQREEEYKNQIKTLNTRLKEAEARAEFAERSVQKLQKEVDRLEDDLVLE KERYKDIGDDLDTAFVELILKE" CDS join(39..152,257..382,487..620,725..842,947..1056, 1161..1236,1341..1403,1675..1744,2878..3662) /note="tropomyosin isoform 33 (9C)" /codon_start=1 /protein_id="AAA28968.1" /translation="MDAIKKKMQAMKVDKDGALERALVCEQEARDANTRAEKAEEEAR QLQKKIQTVENELDQTQEALTLVTGKLEEKNKALQNAESEVAALNRRIQLLEEDLERS EERSASAIQLAAEASQSADESERARKILENRALADEERMDALENQLKEARFLAEEADK KYDEVARKLAMVEADLERAEERAMVEADLERAEERAEQGENKIVELEEELRLVGNNLK SLEVSEEKANQREEEYKNQIKTLNTRLKEAEARAEFAERSVQKLQKEVDRLEDDLIVE KERYCMIGDSLDEAFVDLIKGLEPFWNPRNPKPPTPKLPTPTPEELAAMEEARAAAEA AAAAEAEAAEAAAAAGEAGADGAPAAPGEEKAPAKEPTPPKEPTPPPPPPPPFEYSID LPPEGAEVPYVKNYEPPPPGSEPEPVPAAEGEAAPAAEGAAPPAEGAAPPAEGAVPPA DGAAPPAEGAAPAAEGAAPPADGAAPPAEAAAAPADAAAPAAEAAPAEAPAAEATAAE APPAEAAAAEAAPAAAEGEAPPA" CDS join(39..152,257..382,487..620,725..842,947..1056, 1161..1236,1341..1403,1675..1744,2044..2765) /note="tropomyosin isoform 34 (9B)" /codon_start=1 /protein_id="AAA28967.1" /translation="MDAIKKKMQAMKVDKDGALERALVCEQEARDANTRAEKAEEEAR QLQKKIQTVENELDQTQEALTLVTGKLEEKNKALQNAESEVAALNRRIQLLEEDLERS EERSASAIQLAAEASQSADESERARKILENRALADEERMDALENQLKEARFLAEEADK KYDEVARKLAMVEADLERAEERAMVEADLERAEERAEQGENKIVELEEELRLVGNNLK SLEVSEEKANQREEEYKNQIKTLNTRLKEAEARAEFAERSVQKLQKEVDRLEDEMIKE IEHYALVGDQLDWTFVEMMGMPPFYNERYPKPPATEEEKAALEAAAIAEAEAKARAEL AALGEEAGAEAGEGGAPAEGAAPGEPGAATEPGVEAPPAEPEDPPPPPPPPPFEYSID LPPEGAEVPYVRNAEPGDFAPPAEAAPAEGAPPAEGAPAAEGAAPAEGAPAAEGAPPA EGAPAPAPAEGEAAPPAPAAEGDAAAAPPPPPAEGEAAPAPAEGEAPPAEAAPAAEAP PA" CDS join(39..152,257..382,487..620,725..842,947..1056, 1161..1236,1341..1403,1675..1744,1849..1931) /note="tropomyosin isoform 9A" /codon_start=1 /protein_id="AAA28966.1" /translation="MDAIKKKMQAMKVDKDGALERALVCEQEARDANTRAEKAEEEAR QLQKKIQTVENELDQTQEALTLVTGKLEEKNKALQNAESEVAALNRRIQLLEEDLERS EERSASAIQLAAEASQSADESERARKILENRALADEERMDALENQLKEARFLAEEADK KYDEVARKLAMVEADLERAEERAMVEADLERAEERAEQGENKIVELEEELRLVGNNLK SLEVSEEKANQREEEYKNQIKTLNTRLKEAEARAEFAERSVQKLQKEVDRLEDDLLNV RGKNKLLQEEMEATLHDIQNM" CDS join(39..152,257..382,487..620,725..842,947..1056, 1161..1236,1508..1570,1675..1744) /note="tropomyosin isoform 9E" /codon_start=1 /protein_id="AAA28965.1" /translation="MDAIKKKMQAMKVDKDGALERALVCEQEARDANTRAEKAEEEAR QLQKKIQTVENELDQTQEALTLVTGKLEEKNKALQNAESEVAALNRRIQLLEEDLERS EERSASAIQLAAEASQSADESERARKILENRALADEERMDALENQLKEARFLAEEADK KYDEVARKLAMVEADLERAEERAMVEADLERAEERAEQGENKIVELEEELRLVGNNLK SLEVSEEKATQKEETFETQIKVLDHSLKEAEARAEFAERSVQKLQKEVDRLE" exon <39..152 /note="tropomyosin isoform 33 (9C), (first expressed exon)" /number=2 exon <39..152 /note="tropomyosin isoform 34 (9B), (first expressed exon)" /number=2 exon <39..152 /note="tropomyosin isoform 9A, (first expressed exon)" /number=2 exon <39..152 /note="tropomyosin isoform 9D, (first expressed exon)" /number=2 exon <39..152 /note="tropomyosin isoform 9E, (first expressed exon)" /number=2 intron 153..>154 /note="tro intron B" gap 155..254 /estimated_length=unknown intron <255..256 /note="tro intron B" exon 257..382 /number=3 intron 383..>384 /note="tro intron C" gap 385..484 /estimated_length=unknown intron <485..486 /note="tro intron C" exon 487..620 /number=4 intron 621..>622 /note="tro intron D" gap 623..722 /estimated_length=unknown intron <723..724 /note="tro intron D" exon 725..842 /number=5 intron 843..>844 /note="tro intron E" gap 845..944 /estimated_length=unknown intron <945..946 /note="tro intron E" exon 947..1056 /number=6 intron 1057..>1058 /note="tro intron F" gap 1059..1158 /estimated_length=unknown intron <1159..1160 /note="tro intron F" exon 1161..1236 /number=7 intron 1237..>1238 /note="tro intron G" gap 1239..1338 /estimated_length=unknown intron <1339..1340 /note="tro intron G" gene 1341..3850 /gene="tropomyosin isoform 9D" gene 1341..3662 /gene="tropomyosin isoform 33 (9C)" gene 1341..2765 /gene="tropomyosin isoform 34 (9B)" gene 1341..1931 /gene="tropomyosin isoform 9A" exon 1341..1403 /gene="tropomyosin isoform 9A" exon 1341..1403 /gene="tropomyosin isoform 9A" /note="tropomyosin isoform 34 (9B), A" intron 1404..>1405 /gene="tropomyosin isoform 9A" /note="tro intron H" gap 1406..1505 /estimated_length=unknown intron <1506..1507 /gene="tropomyosin isoform 9A" /note="tro intron H" gene 1508..1570 /gene="tropomyosin isoform 9E" exon 1508..1570 /gene="tropomyosin isoform 9E" intron 1571..>1572 /gene="tropomyosin isoform 9A" /note="tro intron I" gap 1573..1672 /estimated_length=unknown intron <1673..1674 /gene="tropomyosin isoform 9A" /note="tro intron I" exon 1675..1744 /gene="tropomyosin isoform 9A" /number=9 exon 1675..>1744 /gene="tropomyosin isoform 9A" /note="tropomyosin isoform 9D" /number=9 exon 1675..>1744 /gene="tropomyosin isoform 9A" /note="tropomyosin isoform 9E" /number=9 intron 1745..>1746 /gene="tropomyosin isoform 9A" /note="tro intron J" gap 1747..1846 /estimated_length=unknown intron <1847..1848 /gene="tropomyosin isoform 9A" /note="tro I9A intron J" exon 1849..1931 /gene="tropomyosin isoform 9A" exon 1849..>1931 /gene="tropomyosin isoform 9A" /note="tropomyosin isoform 9A, A" /number=10 gap 1932..2031 /estimated_length=unknown intron <2032..2043 /gene="tropomyosin isoform 34 (9B)" /note="tro I34 intron" exon 2044..2765 /gene="tropomyosin isoform 34 (9B)" exon 2044..>2765 /gene="tropomyosin isoform 34 (9B)" /note="tropomyosin isoform 34 (9B), B" /number=10 gap 2766..2865 /estimated_length=unknown intron <2866..2877 /gene="tropomyosin isoform 33 (9C)" /note="tro I33 intron" exon 2878..3662 /gene="tropomyosin isoform 33 (9C)" exon 2878..>3662 /gene="tropomyosin isoform 33 (9C)" /note="tropomyosin isoform 33 (9C), C" /number=10 gap 3663..3762 /estimated_length=unknown intron <3763..3764 /gene="tropomyosin isoform 9D" /note="tro I9D intron" exon 3765..3850 /gene="tropomyosin isoform 9D" exon 3765..>3847 /gene="tropomyosin isoform 9D" /note="tropomyosin isoform 9D, D" /number=10 gap 3851..3950 /estimated_length=unknown CDS join(3962..4555,4618..4795,4954..5036) /note="tropomyosin isoform 127" /codon_start=1 /protein_id="AAA28971.1" /translation="MDAIKKKMQAVKLEKDNAIDKADTCENQAKDANSRADKLNEEVR DLEKKFVQVEIDLVTAKEQLEKANTELEEKEKLLTATESEVATLNRKVQQTEEDLEKS EERSTTAQQKLLEATQSADENNRMCKVLENRSQQDEERMDQLTNQLKEARMLAEDADT KSDEVSRKLAFVEDELEVAEDRVRSGESKIMELEEELKVVGNSLKSLEVSEEKANQRV EEFKREMKTLSIKLKEAEQRAEHAEKQVKRLQKEVDDLEDRLFNEKEKYKAICDDLDQ TFAELTGY" CDS join(3962..4555,4618..4795) /note="tropomyosin isoform 129" /codon_start=1 /protein_id="AAA28970.1" /translation="MDAIKKKMQAVKLEKDNAIDKADTCENQAKDANSRADKLNEEVR DLEKKFVQVEIDLVTAKEQLEKANTELEEKEKLLTATESEVATLNRKVQQTEEDLEKS EERSTTAQQKLLEATQSADENNRMCKVLENRSQQDEERMDQLTNQLKEARMLAEDADT KSDEVSRKLAFVEDELEVAEDRVRSGESKIMELEEELKVVGNSLKSLEVSEEKANQRV EEFKREMKTLSIKLKEAEQRAEHAEKQVKRLQKEVDDLE" exon <3962..4555 /note="tropomyosin isoform 127" /number=1 exon <3962..4555 /note="tropomyosin isoform 129" /number=1 intron 4556..4617 /note="tro I127, tro I129 intron A" exon 4618..>4795 /note="tropomyosin isoform 127" /number=2 exon 4618..>4795 /note="tropomyosin isoform 129" /number=2 intron 4796..>4843 /note="tro I127, tro I129 intron B" gap 4844..4943 /estimated_length=unknown intron <4944..4953 /note="tro I127 intron B" exon 4954..>5036 /note="tropomyosin isoform 127" /number=3 BASE COUNT 906 a 1080 c 1128 g 534 t ORIGIN 9 bp upstream of TaqI site; chromosome 3R, subdivision 88F. 1 agtttctttc gagtgcagag tagcaaaaca aaacagacat ggatgccatc aagaagaaga 61 tgcaagcgat gaaagtcgac aaggacggag ctctggagcg cgctctcgtc tgcgagcagg 121 aggcacgcga tgccaacacc cgcgccgaga aggtnnnnnn nnnnnnnnnn nnnnnnnnnn 181 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 241 nnnnnnnnnn nnnnaggccg aggaggaggc tcgccagctg cagaagaaga tccagaccgt 301 tgagaacgag ctggatcaga cccaggaagc cctgaccctg gtcaccggca agctggagga 361 gaagaacaag gctctgcaga acgtnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 481 nnnnaggccg aatccgaggt tgccgctctg aaccgtcgca tccagttgct cgaagaagat 541 cttgaacgct ctgaggagcg ctctgcctcc gccatacagc tagctgccga agcctctcag 601 tccgccgatg agagcgaacg gtnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 661 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 721 nnagtgctcg caaaattctt gagaaccgcg cccttgccga tgaagaacgc atggacgctc 781 tcgagaatca gctgaaggaa gcgcgtttcc ttgctgagga ggctgacaag aaatacgatg 841 aggtnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnaggttg cccgtaaatt 961 ggccatggtt gaagccgatt tggaacgtgc cgaagagcgt gccatggttg aagccgattt 1021 ggaacgtgcc gaagagcgtg ccgagcaggg tgaaaagtnn nnnnnnnnnn nnnnnnnnnn 1081 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1141 nnnnnnnnnn nnnnnnnnag caaaattgtg gagcttgagg aggagctgcg gctggttggc 1201 aacaacctga agtccctgga agtctctgag gagaaggtnn nnnnnnnnnn nnnnnnnnnn 1261 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1321 nnnnnnnnnn nnnnnnnnag gccaaccaac gtgaggagga gtacaagaac cagatcaaga 1381 ccctcaacac ccgtctaaag gaggtnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1441 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1501 nnnnnaggcc acacaaaaag aggagacctt tgagacgcaa atcaaagtat tggatcattc 1561 tctgaaagag gtnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnaggctgag 1681 gctcgtgctg agttcgctga acgctccgtt cagaaattgc agaaggaagt cgacaggctc 1741 gaaggtnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1801 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnagat gacctgctca 1861 acgtgcgggg caagaacaaa ctgctgcagg aggaaatgga ggccacctta catgacatac 1921 agaacatgta annnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1981 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ntcgccacgc 2041 cagacgagat gatcaaagag atcgagcact atgccctcgt cggcgaccag ctggactgga 2101 ccttcgtgga gatgatgggc atgccgccat tctacaacga gcgctacccc aagccgccgg 2161 ccaccgagga ggagaaggcc gccctagagg ccgctgccat tgccgaggcc gaggcgaagg 2221 ctagggccga gctggctgcc ctcggcgagg aggcaggcgc agaggctggg gagggtggtg 2281 caccggcgga gggcgccgct cccggcgagc ctggtgcagc aactgagccc ggcgtcgagg 2341 caccaccggc cgaacccgag gatcccccac cgccgccacc accaccacca ttcgagtact 2401 ccatcgattt gcccccagag ggtgctgagg tgccgtacgt taggaacgcg gagccaggcg 2461 actttgctcc gcccgccgaa gcagcaccag ctgaaggagc cccaccagcc gagggagcac 2521 cagcagcgga aggagccgca ccagccgagg gagcacccgc tgcagagggc gctccaccgg 2581 cagaaggagc accagcacct gcacctgctg agggtgaagc tgctccacca gcaccggctg 2641 ccgaagggga tgccgccgcc gcacctccac caccgccggc tgagggagag gctgctccgg 2701 caccagccga gggcgaagca ccacctgccg aggcggctcc tgctgctgaa gcaccacctg 2761 cttagnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2821 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnncgcca taaccagacg 2881 acctaatcgt tgaaaaagag cgctattgca tgattggcga cagcctagac gaggccttcg 2941 tggacctcat taagggtctg gagccgttct ggaatccgcg caaccccaag ccgccgactc 3001 ccaagctccc gacgcccacg ccagaggaac tggccgccat ggaggaggca cgagctgcgg 3061 ccgaagctgc cgcagctgca gaagcggaag ccgcagaagc agctgcagcg gctggcgaag 3121 ccggagcaga tggtgcgccc gctgcacccg gagaggaaaa ggcaccggcc aaggaaccca 3181 ctccgcccaa ggagcccact cctccgccac caccaccacc gccattcgag tactcgatcg 3241 atctgccccc agagggtgcc gaggtgccct atgtcaagaa ctacgagcca ccaccacccg 3301 gatccgagcc agagccagtg ccagccgctg aaggagaggc tgctccggcg gcggagggtg 3361 ctgctcctcc ggctgagggt gctgctccac ccgcagaagg cgctgttcct ccagctgacg 3421 gtgctgctcc gccagctgag ggtgctgctc ctgctgctga aggcgctgct cctcctgctg 3481 atggcgccgc tcctccagcc gaggctgccg cagctccagc tgatgcagcg gctccagctg 3541 ccgaggctgc tccagctgaa gcacctgcag ccgaagccac cgccgccgaa gctcctccag 3601 ctgaagcagc tgccgccgaa gcggctccag ctgctgctga aggcgaggct cccccagctt 3661 agnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3721 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnagacgacc tcgtcctcga 3781 gaaggagcgt tacaaggaca tcggagacga tctcgacacc gccttcgtcg agctcatcct 3841 caaggaataa nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3901 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn acacaaacac 3961 catggacgcc atcaagaaga agatgcaagc tgtgaagctt gagaaggata acgccattga 4021 caaggccgac acctgcgaga accaagccaa ggatgccaac tcccgcgccg acaaactgaa 4081 cgaggaggtg cgcgatctgg agaagaagtt cgtccaggtg gagatcgatc tggttaccgc 4141 caaggagcag ctggagaagg ccaacaccga gctggaggag aaggagaaac tcctgaccgc 4201 caccgagtcc gaggtggcca ccctgaaccg caaggtgcaa cagaccgagg aggacctgga 4261 gaagtccgag gagcgctcga ccaccgccca acagaagctg ctggaggcca cccagtcggc 4321 cgatgagaac aaccgcatgt gcaaggtgct ggagaaccgt tcccagcagg atgaggagcg 4381 catggaccag ctgaccaacc agctgaagga ggcccgtatg ctggctgagg atgccgatac 4441 caagtccgac gaggtctccc gcaagctggc cttcgttgaa gacgagctgg aggtggctga 4501 ggatcgtgtc cgctccggcg agtccaagat catggagctg gaggaggagc tgaaggtggg 4561 tctttaagag aaatccttct gttctcaaac gaatattcat ggtgtattcc caactaggtt 4621 gtcggcaact ccctgaagtc cctggaggtg tccgaggaga aggccaacca gcgcgtggag 4681 gagttcaagc gcgagatgaa gaccctgtcc atcaagttga aggaggccga gcagcgcgcc 4741 gagcacgccg agaagcaagt gaagcgcctg cagaaggagg tcgacgacct agagggtatg 4801 tatccaacct cctacgcccc tgacacatca ctcagccatt ttcnnnnnnn nnnnnnnnnn 4861 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 4921 nnnnnnnnnn nnnnnnnnnn nnnctttttg cagaccgtct cttcaatgag aaggaaaaat 4981 acaaagcaat ctgcgacgat ttggaccaga catttgccga acttactgga tattaaaaaa 5041 gatcacaa //