LOCUS KZ992442 60746 bp DNA linear CON 10-OCT-2018 DEFINITION Thamnocephalis sphaerospora strain RSA 1356 unplaced genomic scaffold THASP1NODE_19, whole genome shotgun sequence. ACCESSION KZ992442 QUVU01000000 VERSION KZ992442.1 DBLINK BioProject: PRJNA421763 BioSample: SAMN09741940 KEYWORDS WGS. SOURCE Thamnocephalis sphaerospora ORGANISM Thamnocephalis sphaerospora Eukaryota; Fungi; Fungi incertae sedis; Zoopagomycota; Zoopagomycotina; Zoopagomycetes; Zoopagales; Sigmoideomycetaceae; Thamnocephalis. REFERENCE 1 (bases 1 to 60746) AUTHORS Ahrendt,S.R., Quandt,C.A., Ciobanu,D., Clum,A., Salamov,A., Andreopoulos,B., Cheng,J.-F., Woyke,T., Pelin,A., Henrissat,B., Reynolds,N., Benny,G.L., Smith,M.E., James,T.Y. and Grigoriev,I.V. CONSRTM DOE Joint Genome Institute TITLE Leveraging single-cell genomics to expand the Fungal Tree of Life JOURNAL Unpublished REFERENCE 2 (bases 1 to 60746) AUTHORS Ahrendt,S.R., Nordberg,H.P., Cantor,M.N. and Hua,S.X. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (31-JUL-2018) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://genome.jgi.doe.gov/Thasp1 JGI Project ID: 1090758 The DNA was provided by Gerald Benny(gbenny@ufl.edu) The strain is available from Gerald Benny Contacts: Timothy Y. James (tyjames@umich.edu) Assembly and annotation done by JGI. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) This submission is a co-assembly of 9 Illumina libraries: five single cell libraries and four 50 cell libraries. The amplification method for all 9 libraries was MDA. ##Metadata-START## Organism Display Name :: Thamnocephalis sphaerospora RSA 1356 single-cell v1.0 GOLD Stamp ID :: Gp0036342 ##Metadata-END## ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.6.0 Assembly Name :: Thasp1 Single-cell Amplification :: MDA Genome Coverage :: 100x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..60746 /organism="Thamnocephalis sphaerospora" /mol_type="genomic DNA" /submitter_seqid="THASP1NODE_19" /strain="RSA 1356" /isolation_source="co-assembly of five single cell libraries and four 50 cell libraries amplified by MDA" /db_xref="taxon:78915" /chromosome="Unknown" gene <60..>894 /locus_tag="THASP1DRAFT_21649" mRNA join(<60..80,297..815,862..>894) /locus_tag="THASP1DRAFT_21649" /product="hypothetical protein" CDS join(<60..80,297..815,862..894) /locus_tag="THASP1DRAFT_21649" /codon_start=1 /product="hypothetical protein" /protein_id="RKP10653.1" /db_xref="JGIDB:Thasp1_21649" /translation="RKKRKKRPPVQLLFGFLPITHPIMSGYPGYGPNATPQPPPAASA YPSPPAATYPPPPQHATAPVQPFPPSQDAYKEGEKHAYYQYAAAPGPVQTQQPYAMVM TPTEYDATIRPSGPNGQYTVEDYQKMAQARIPRFPVEQYGRCPKDGGEHHVRAEYANS SLCFLAMCGWCAPVCISQEMPGSTGTLVHG" gene complement(<1423..>3459) /locus_tag="THASP1DRAFT_21650" mRNA complement(join(<1423..1572,1633..1762,1838..2076, 2148..2242,2331..2548,2622..2728,2784..2980,3044..3241, 3320..3395,3457..>3459)) /locus_tag="THASP1DRAFT_21650" /product="RuvB-like 2" CDS complement(join(1423..1572,1633..1762,1838..2076, 2148..2242,2331..2548,2622..2728,2784..2980,3044..3241, 3320..3395,3457..3459)) /locus_tag="THASP1DRAFT_21650" /note="GO_function: GO:3678; ATP binding - DNA helicase activity [GO Ref 5524]" /codon_start=1 /product="RuvB-like 2" /protein_id="RKP10654.1" /db_xref="InterPro:IPR010339" /db_xref="JGIDB:Thasp1_21650" /translation="MASLSTTSGTTAFGADIKDLTRIERIGAHSHIHGLGLDEQLEPK ASAQGMVGQLKARKAAGVILRMIKAGKIAGRSILMAGAPGTGKTAIAMGMAQELGTDV PFTMLASSEIFSMEISKTEALTQAFRRSIGIRIKEETELIEGEVVEIQVDRSVTGTGS KTGKLTLKTTDMETIYDLGTKMIDALNKEKVAAGDVITIDKSTGRITKLGRSHLYARD YDATGAETTFVKCPEGELQKRREVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKPEV RDQINQKVTEWREEGKADIVPGVLFIDEVHMLDIECFSFLNRALEDDFAPVVIMASNR GHARIRGTNYRSPHGVPIDLLDRVLIISTSPYNEDEIRQILRIRCDEEDVAITEEAHE LLTRIGGDASLRYAMQLITAANLVARKRKSDKVDTVDVQRVYNLFLDEKRSIQYVREH QDEFMFNEITPTEGAGAMEL" gene <4056..>8392 /locus_tag="THASP1DRAFT_27539" mRNA join(<4056..4480,4566..5045,5109..5498,5570..5795, 5878..7000,7074..7264,7329..7545,7603..7676,7740..7940, 8015..>8392) /locus_tag="THASP1DRAFT_27539" /product="hypothetical protein" CDS join(4056..4480,4566..5045,5109..5498,5570..5795, 5878..7000,7074..7264,7329..7545,7603..7676,7740..7940, 8015..8392) /locus_tag="THASP1DRAFT_27539" /note="GO_function: GO:5515 - protein binding" /codon_start=1 /product="hypothetical protein" /protein_id="RKP10655.1" /db_xref="InterPro:IPR001680" /db_xref="JGIDB:Thasp1_27539" /translation="MDHTTSAGLSPPPSNSLLELLHSPRNNSPTSRQPGESNAAASLL SVLNQSSPSPALVQQQQPQQQPQLVQPQQSEPSLMALIGGIDAGVGGHLGMDQERVNE ASTAELKSVLFGSLNLGSVSSLGDTLHALAPQTVGSSEAGLLSNVHAIPTSPMQPQVT LEASTPLSGEQSVQSLGGPVSSVPLEHQAPEGRAMAAPLFTYANPFDQLTKVKRGLTS SAPALTATSTPEGGGMRSEPSVQSGYGSSPAMFSRPAHQHMLAVDDESPVHRHHSPLM VGSANTTPDYAARRIREQHSHKAVKGVPSGVRLLEGESQIDVSASNPSMMSLHDLEVT TITLMPTECEMHAGSTIAATKRLIAYAIKGGRVRVIHQMFGTRASIGGHKNAVLDLAF YNPLRGGEHEQRLVTIGTDHRLCVWQFSEPNPTERNEEIPHHLVLELDGAPANLREAR FRRAVWHPSDPDVLACAADRGELLIFNLSIMLAGRDDCRVVEGDRNLGAIQLKGHKKP IVDLCFSANGNEIVTASEDGTVRLWQVSNMDGQCVGMFTPCGGLPVTAAKFVENVVNG QVADELRCILVASDDNRLIKLLNRDGSQCLQQLTFHSDGAEFFNVINYDSATRTLALA NSRRESLYCAHVRLDDMPQLVYVVEFPLEYPAVSLAVAPDCTDEASSSFALCCVQTGA VQQFHVPLRSVLPRRWERCPLISDMNEDGLLRRHSAGRAANQLTEMELLRSLAGNTSL TYSERIDGTGSSAATPDMRSPITGTFSDGGADLSHRRMPSDAAHNMSLDAGGKNKLVK TPTSGRTPTAGAVPTGSSKTSGKTAESAVTTRDHPAFRSPQLKPRQDVVDVDPVSLTG SHLRILEDSVVSRIGKLLNKELSKREERLERERQSHQAAEIAHYEALMNNMVHSLHET MAHLIVEAVQVEMSERVLPAMERTVTVAVEKAMTTSIEGAVSQQTRQLLSSEALREPV QLAVTSVVKPAVEETMHACIRNVMLPVWQQSLESIRQVGTNASRSASAHPVQSTVSRI PQTGHEAGFVNVAAPMPKMPGDASRLVSSNHVSPAIPSQQSAPFAMHQRSTSVVGVND PIIAHMEAAIANGQHEDAVVKVLESKNPQALDALMTPSNLTIFFPPHLPTRLGQPILL AFIHQLGQNLQHNRDVRFAWILAVASRINVRDPAIMDHSRRVLPGLDENVKHAYVAMH AELGANHPALATPLAVLRQLEQFMPLMLQP" gene complement(<8857..>9335) /locus_tag="THASP1DRAFT_12500" mRNA complement(join(<8857..8983,9044..9186,9309..>9335)) /locus_tag="THASP1DRAFT_12500" /product="hypothetical protein" CDS complement(join(8857..8983,9044..9186,9309..9335)) /locus_tag="THASP1DRAFT_12500" /note="GO_function: GO:8270 - zinc ion binding" /codon_start=1 /product="hypothetical protein" /protein_id="RKP10656.1" /db_xref="InterPro:IPR008913" /db_xref="JGIDB:Thasp1_12500" /translation="MCKHVLNAQVAVRAPCCRRWFECTECHTEASDHPLLKTMEMVFA CKKCKRTFRKDMHDYSEEDEYCPHCDNHYVIPAVTTKEEEAAAHRTKERCVQRW" gene <9668..>10565 /locus_tag="THASP1DRAFT_27541" mRNA join(<9668..9820,9881..9960,10053..10105,10171..10235, 10292..10356,10520..>10565) /locus_tag="THASP1DRAFT_27541" /product="Got1/Sft2-like family-domain-containing protein" CDS join(9668..9820,9881..9960,10053..10105,10171..10235, 10292..10356,10520..10565) /locus_tag="THASP1DRAFT_27541" /note="GO_process: GO:16192 - vesicle-mediated transport" /codon_start=1 /product="Got1/Sft2-like family-domain-containing protein" /protein_id="RKP10657.1" /db_xref="InterPro:IPR007305" /db_xref="JGIDB:Thasp1_27541" /translation="MKNPFASQSAVSTGGPSDLMDDACDFCTLTKKQRLYGWLMCFVI GFILTILSTLCLLTLNITGFAIIYTLGNLISLGSTGFLIGPLRQLKTMFAKVRVFATI IYLVLLVATLVEAITLKNFVLTIILCILQFCALFWYCALIRKTLGGATSLG" gene complement(<10762..>11473) /locus_tag="THASP1DRAFT_27542" mRNA complement(join(<10762..10920,10983..11122,11201..11279, 11381..>11473)) /locus_tag="THASP1DRAFT_27542" /product="hypothetical protein" CDS complement(join(10762..10920,10983..11122,11201..11279, 11381..11473)) /locus_tag="THASP1DRAFT_27542" /codon_start=1 /product="hypothetical protein" /protein_id="RKP10658.1" /db_xref="InterPro:IPR001623" /db_xref="JGIDB:Thasp1_27542" /translation="MNIDAILGELARQPDIYDDLYGVLGCTPSNTAEQIATEYRRRTL ACHPDRRPNDQDAARQEFERLNVAYGILGRETERASYERWRTSGLKVSFASWRALNER AQAVHWQPQPTQSVIDNRPYEGWRAAQPACKAKGTIATESESERLIQQFRNYEL" gene complement(<11823..>13347) /locus_tag="THASP1DRAFT_34047" mRNA complement(join(<11823..11970,12050..12110,12171..12320, 12393..12524,12586..12625,12688..12822,12883..12987, 13044..13149,13217..>13347)) /locus_tag="THASP1DRAFT_34047" /product="kinase-like domain-containing protein" CDS complement(join(11823..11970,12050..12110,12171..12320, 12393..12524,12586..12625,12688..12822,12883..12987, 13044..13149,13217..13347)) /locus_tag="THASP1DRAFT_34047" /note="GO_function: GO:4672; ATP binding - protein kinase activity [GO Ref 5524]; GO_process: GO:6468 - protein amino acid phosphorylation" /codon_start=1 /product="kinase-like domain-containing protein" /protein_id="RKP10659.1" /db_xref="InterPro:IPR000719" /db_xref="JGIDB:Thasp1_34047" /translation="MELTRAYKARRDARRPRLVDRYEILGFISSGTYGRVYKARSRDS DDDGEYAIKAFKVEKEGESGLVAAGISQSACREIALCRELSHINIMALREVLTENHAI YMILEYAEHDLLQVLQYHGHEERKPLPELTVKSFLWQLLNGLAYLHANWILHRDLKPA NILVTTKGVVKIGDLGLARVYRQPLLPLADGDRVVVTVWYRAPELLLGAKHYTKAIDI WAVGCIFAELLTLRPIFKSEEVKMDGRKTPPFQRHQVVKIIEVLGTPTVARWPGVVDL PEYSNLAAIRDYWKTCSSKSEQGFDLLRLMLEYDPERRISADQAMDHPYFQEEPKPAF K" gene complement(<13645..>14385) /locus_tag="THASP1DRAFT_12503" mRNA complement(<13645..>14385) /locus_tag="THASP1DRAFT_12503" /product="Rieske [2Fe-2S] iron-sulfur domain-containing protein" CDS complement(13645..14385) /locus_tag="THASP1DRAFT_12503" /note="GO_function: GO:16491; 2 iron, 2 sulfur cluster binding - oxidoreductase activity [Evidence 8121] [GO Ref 51537; ubiquinol-cytochrome-c reductase activity]; GO_process: GO:55114 - oxidation reduction" /codon_start=1 /product="Rieske [2Fe-2S] iron-sulfur domain-containing protein" /protein_id="RKP10660.1" /db_xref="InterPro:IPR004192" /db_xref="InterPro:IPR017941" /db_xref="JGIDB:Thasp1_12503" /translation="MVVDCATSGVLRAHTACFPPHRRITYPLPCIHGWPCCSWCFRLT AAAAQVGQQQRFSATSANSNSTDIPDFSEYRKDSTPDTSRAFAYMMVGTTGVLSAVAA KSTVHDFLSNMSASADVLALAKVEVDLSAIPEGKNVVVKWRGKPIFIRHRTAAEIAEA NAVNISELRDPQLDSARAQQPEWLVMLGICTHLGCVPIGDAGDYGGWFCPCHGSHYDI SGRIRKGPAPLNLEIPEHVIDGDKLVIG" gene <15045..>17438 /locus_tag="THASP1DRAFT_12512" mRNA join(<15045..15222,15287..15402,15482..15553,15620..15712, 15782..15913,15972..16083,16137..16386,16451..16662, 16728..16910,16990..17063,17139..>17438) /locus_tag="THASP1DRAFT_12512" /product="tRNA synthetase class I" CDS join(15045..15222,15287..15402,15482..15553,15620..15712, 15782..15913,15972..16083,16137..16386,16451..16662, 16728..16910,16990..17063,17139..17438) /locus_tag="THASP1DRAFT_12512" /note="GO_function: GO:166; aminoacyl-tRNA ligase activity - nucleotide binding [Evidence 5524] [GO Ref 4812; ATP binding]; GO_process: GO:6418 - tRNA aminoacylation for protein translation" /codon_start=1 /product="tRNA synthetase class I" /protein_id="RKP10661.1" /db_xref="InterPro:IPR015413" /db_xref="JGIDB:Thasp1_12512" /translation="MRAALALRRFFAAPGRSGLRCAPLFTFAKAAPPPPPPPPPVPAH PKPYYVTTPIFYVNADPHIGHFYSLVLADTVRRYQQLRGRDALLATGTDEHGMKIQQA ARNVNKTPKELCDDVSQRFRDLATAAGVLGEDTVFTRTTDQLHVQTVHKLWRRLMKSG HIYKGSHEGWYSVSDEAFYQPSQVATVKDPVTQKDIQISTETGQRVEWIVEENYKFRL SAFREPLRRWLTDNPEIIVPQARHNEVLAYLSQEVPDLSISRPRSRLTWGIPVPDDEE HVIYVWLDALTNYLTATRTWERASEAKAWPTDLHVVGKDIIRFHAIYWPAFLMAANLP LPRQILAHAHWTMDKQKMSKSRGNVADPFELLDRYGVDAVRYFMMRDGGIINDSDYSE ESIRKRYKKELSGQLGNLLSRATSASLLPNGIFPRPPEAGHLEASDHELRESLSSLAI RVGPHFDRHEFGRGLAQISDAIALANKYFTDNAPWVLARETESVTAHRRLQNILFHSL ETVRIAGILLQPVMPKKTDMLLSGLGVDSVERRWQDALLDGDVQGKLATRQVHTNSVL FPKLPMP" gene complement(<17498..>19605) /locus_tag="THASP1DRAFT_27546" mRNA complement(join(<17498..17619,17709..17810,17948..18009, 18089..18333,18407..18496,18558..18670,18740..18850, 18907..19033,19107..19228,19296..19513,19577..>19605)) /locus_tag="THASP1DRAFT_27546" /product="DNA polymerase alpha/epsilon subunit B-domain-containing protein" CDS complement(join(17498..17619,17709..17810,17948..18009, 18089..18333,18407..18496,18558..18670,18740..18850, 18907..19033,19107..19228,19296..19513,19577..19605)) /locus_tag="THASP1DRAFT_27546" /note="GO_function: GO:3677; DNA-directed DNA polymerase activity - DNA binding [GO Ref 3887]; GO_process: GO:6260 - DNA replication" /codon_start=1 /product="DNA polymerase alpha/epsilon subunit B-domain-containing protein" /protein_id="RKP10662.1" /db_xref="InterPro:IPR007185" /db_xref="JGIDB:Thasp1_27546" /translation="MAHASSSRAVAADHLLAADESDAAQYLKRPQAEYDPLSERREQF LLKERSYQQQYANVYFQRLNRLKAPAAAEAKRRWSKQHGIQNVLPRILDVQTGQLCCV VGTVYVDMKLKPNVLEDVAREHKVTAPPPREKYYADDDATLLEDESGRIVLSSDNIRA HHLVSGVVAAVLGRENSSGEFVVKDVCFPNLPPQPARPVSSGGRKYLALVSGVQIGAG HMDVLRTQLLAQYLRGELGSLLDQEEEADIVRVIFAGNTFSPLEVETDTRHSRRGGRN APATASTEPTAAQHADAFLLDVCSSLDVDLMPGELDPATHALPQQPILPMLLPHSSQC SSLNTVTNPYWGNIAGNVVLGNSGQSLDDLIKYVDTEDRCYPFQDREPFIIDECPSIY FIGNQPRLETTLVQGPDGQQTRMILLPSFAQTGVLALVDLATLDCQSVTLDAAF" gene <19718..>20241 /locus_tag="THASP1DRAFT_12522" mRNA join(<19718..19848,19905..20057,20130..>20241) /locus_tag="THASP1DRAFT_12522" /product="CDK-activating kinase assembly factor MAT1-domain-containing protein" CDS join(19718..19848,19905..20057,20130..20241) /locus_tag="THASP1DRAFT_12522" /note="GO_component: GO:5634 - nucleus; GO_function: GO:5515; zinc ion binding - protein binding [GO Ref 8270]; GO_process: GO:7049 - cell cycle" /codon_start=1 /product="CDK-activating kinase assembly factor MAT1-domain-containing protein" /protein_id="RKP10663.1" /db_xref="InterPro:IPR001841" /db_xref="InterPro:IPR015877" /db_xref="JGIDB:Thasp1_12522" /translation="MFAKRRAELAPAYQDKNDKCPICRSERYMNTTMRLLVGPCFHTM CDSCIDRLFAQGPAPCPICHQILRKMAFVEPTFEDLGVEKEVRIRKRLAETFNKRPED FATLREYNDYLEDVEEISMSRTATLQHMT" gene complement(<21241..>22281) /locus_tag="THASP1DRAFT_27548" mRNA complement(join(<21241..21364,21418..21464,21541..21809, 21874..21937,21998..22103,22175..>22281)) /locus_tag="THASP1DRAFT_27548" /product="nucleolar protein 12-domain-containing protein" CDS complement(join(21241..21364,21418..21464,21541..21809, 21874..21937,21998..22103,22175..22281)) /locus_tag="THASP1DRAFT_27548" /codon_start=1 /product="nucleolar protein 12-domain-containing protein" /protein_id="RKP10664.1" /db_xref="InterPro:IPR019186" /db_xref="JGIDB:Thasp1_27548" /translation="MDNTRILTAGARTYAKKRKQRKEQVEEICFDDSVRREFLTGFQK RKQERRLAYKKRADEKARQERLEERKMRREAREEMAQQRIDEYEEYAKRLRRERGESS SEEEEEEEEEENKEKKKEETNTAEGDPWAVDSVGTGHVSSFKGGSTATTVTVISEMDD EAEVDAAARESVKARAKAAEQRKKTSEETIVQQEMEKLERSLSKQNKPKKFRYETKAA RRATIAKSKSAKAKYHKKSK" gene <22493..>23361 /locus_tag="THASP1DRAFT_12534" mRNA join(<22493..22679,22751..22838,22922..23025,23086..23188, 23274..>23361) /locus_tag="THASP1DRAFT_12534" /product="acyl-CoA N-acyltransferase" CDS join(22493..22679,22751..22838,22922..23025,23086..23188, 23274..23361) /locus_tag="THASP1DRAFT_12534" /note="GO_function: GO:8080 - N-acetyltransferase activity" /codon_start=1 /product="acyl-CoA N-acyltransferase" /protein_id="RKP10665.1" /db_xref="InterPro:IPR000182" /db_xref="JGIDB:Thasp1_12534" /translation="MNIRRATVSSAALTKSTFGAWPERELTCACTLRLHAYCQVDDLP AMQHCNLMNLPENYQLKYYLYHALSWPQLSYVAEDHKGRIVGYVLAKMEEDPSDTPHG HITSLSVMRNYRRLGIAEKLMRQSQQAMADCFGAKYLSLHVRKSNRAALSLYRDTLGF TVVDIEAKYYADGEDAYAMRCDLTPLKRA" gene <23740..>30834 /locus_tag="THASP1DRAFT_12509" mRNA join(<23740..23964,24064..24177,24239..24580,24669..24866, 24931..25196,25260..26457,26533..26758,26828..26970, 27058..27591,27668..28024,28139..28435,28528..28773, 28845..29048,29103..29491,29568..29682,29749..30385, 30456..30588,30663..>30834) /locus_tag="THASP1DRAFT_12509" /product="CCR4-Not complex component, Not1-domain-containing protein" CDS join(23740..23964,24064..24177,24239..24580,24669..24866, 24931..25196,25260..26457,26533..26758,26828..26970, 27058..27591,27668..28024,28139..28435,28528..28773, 28845..29048,29103..29491,29568..29682,29749..30385, 30456..30588,30663..30834) /locus_tag="THASP1DRAFT_12509" /codon_start=1 /product="CCR4-Not complex component, Not1-domain-containing protein" /protein_id="RKP10666.1" /db_xref="InterPro:IPR007196" /db_xref="InterPro:IPR024557" /db_xref="JGIDB:Thasp1_12509" /translation="MLDLGYKCCSSPAAVHEVLAQYGVGDASPLSAEEVARVLGMMVR THVSLEASSGPDGTLAKTWNSQMFASVIAEKQPDLDWEEVLKQLDYPEFTVFDLEGMM LIVSAYRAAIKETRPLPASVLLREWTNKRGHYSLFKHAIFCSPDLADFSTDTPQKILQ PEDGAELNANMKSMAVTLSAHKWNSVAFFETLVSFHDAEPVGDLRTQLEKMSKMSAEL VFLGLLQVKGNWSDLHQEALTKLLFVFLVGHPNSSLILSRLWTLNGTMLVSGLREMYK KDANTLSRILDVAQDLKIITTLLSIESFNFTIDLAALASRREYLNLEKWLLDSIARHK DQFIAACLNFLKSKMNEEIARQTHNVASQSVPLSLEVNAIFLRVLERSTMTPANTDYF KEVRNTCLQVHPRLMNVGASAEELASGSETTFSSDVEAEVNGHYERIYRGDMSMDSVV ELLTRLKNSPDPRQQQVFACMVHNLFDEYRFFPKYPDKELAITSVLFGSLIRYQLVSY TPFGIALRYVLDALRSSPGSRMFKFGVQALTQFQSRLAEWPPFCEHLLQIPHLRQFLP ELAQFARSVTTAAHQQKQHQQLAQPPSHGHPPTSQQGSPPSLPQQQQQQGDGRGSLSH ASSPAPPVRNVALVFNSVHVDYEDEEIVAPSEALQDRILFNINNLAENNLLSKLPELR ETIEESVYAWFSQYLVVKRASLEPNQHELYLKMLDLLRKPDLLKCVLRQTLVNIRVLL NSEKTVDSSSERALLKNLGSWLGGMTLARNVPIRHKHIAFKDLLIEGYDSGRLIVAIP FVAKVLEQGKRSTVFRPPNPWLMGILRLLVELYHFADLKLNLKFEVEVLCNAFQIKVD DIEATTLLKDRPPKELLDPHAVAGAMDALNYGYPLQSANTGATSAATLQNTAAYDDLL NVGLPNLASFLHFDPSFTLFITQPVLKRIFHLAIDRAIREIIAPVVERSVTIAGISTR ELIIKDFALEPNEEKMRKAAHSMVRSLAGNLALVTCKEPLRVNITNHVRTLMVQGNYH DQNLPEDLITVTVEDNLELACSIVEKAAADKAVPEIDEILAASFNNRRKYRERTGQPY YDMNAFSASRYPANLPDALRLKPTGLSAAQLRVYDEFAKSARPAGQARPLGAPSSDGS PLFTYGASDQLGATQPSSSSSLLPQQGSQPSQPIQPMLQQAQQGQQQSQQQDPYRQFI AELDAKISANADVPWQKLPVHHDINVLMRQISLLAGQSRQRDEVALTFSQKVVQLLYK NDTELSREVYVMLLEHLCKISVKVDKEVTAWLLYADDERKYNVPVTMALIKAGLINVA ELDLQLAKLMEANRPAAVEFAAKLVRQCVFDTQQSCATRNQFANSLATLARIAQRTAV SETCLLEEIKMGPAQSDELSAVTMSGAVSAIGTGNTELASIRDQLVFVFGEWVRLYQH PSSNEKSLAVFVNQIQQQSILQDENTFSLFFRSCIELCVEIYQKQAATTGSSALAIYQ TVDAYAKLIALLVRSHDEKNGVTQAAYLKKILSITVLVLVKEHEQRKQKFNQKPFFRL FVGLLMELNLSESSVLPEQRFAFLQAFSETFHTLRPSFLPGFTFAWVSLISHRLFMPK LLLAEDRKGWPVALKLQMDLFQFLYPFLERVEMKDSTRLLYKSALRILLVLLHDFPDF LSAYHLDFCDNIPVVCIQLRNLILSAFPRDIRLPDPFMRNLKVDLLPEVNQPPTVLSD YTAILADSGLKQDIDNYLKARAPVSFLLDLRSRLTLSATPGSPDQAAAAAVVRYNVPL INALVMYIGVQAVAHLHGKGQEGVSPITHSVPMDIFQQLLIDMDLEGRYLFVNAIANQ LRYPNSHTHYFSCVLLYLFAEANQDIIKEQITRVLLERLIANRPHPWGLMITLIELMK NPCYKFWDHPFTRCAPDIERLFQSVARSINI" gene complement(<30951..>32347) /locus_tag="THASP1DRAFT_27550" mRNA complement(join(<30951..31086,31146..31255,31324..31514, 31577..31893,31956..>32347)) /locus_tag="THASP1DRAFT_27550" /product="DExH-box splicing factor binding site-domain-containing protein" CDS complement(join(30951..31086,31146..31255,31324..31514, 31577..31893,31956..32347)) /locus_tag="THASP1DRAFT_27550" /codon_start=1 /product="DExH-box splicing factor binding site-domain-containing protein" /protein_id="RKP10667.1" /db_xref="InterPro:IPR026822" /db_xref="JGIDB:Thasp1_27550" /translation="MFSGRRVGGKPAKIGFTLAGATPAATPEQPAATLVAKTSSLAAN ALPDKASTDAVAATPENAGTAPRAAGKKFGFSLGGLSTSQPKVKQHVRAFAGDSSTRR KRQHSSDEETEEVDKVVLLTGFEGNQAMSVHQEPEKGPLVIKPIANRDWRADRRKLRQ QQIEDISATRPAASGTVERISHDASYGLQLTQKRTPPVGQPTPETASEEPAPVLQAPT RVTTRETLEQQAIDELLADAQRQRDGPSTAEEDQSNKPKLVLPMQVDGADVDSSRTSG PSQADMSRMERDAFKVDLAACPDVSTLDDYDDVPIEEFGAALLRGMGWKDGQGIGRGH RNGDPKSYSIEQRPRLLGLGAKPKPPDEFDQPKRPRRPKLPLPPPLP" gene <32998..>35396 /locus_tag="THASP1DRAFT_21660" mRNA join(<32998..33229,33300..33380,33489..33584,33688..33927, 33996..34322,34387..34560,34642..>35396) /locus_tag="THASP1DRAFT_21660" /product="SCA7, zinc-binding domain-containing protein" CDS join(32998..33229,33300..33380,33489..33584,33688..33927, 33996..34322,34387..34560,34642..35396) /locus_tag="THASP1DRAFT_21660" /codon_start=1 /product="SCA7, zinc-binding domain-containing protein" /protein_id="RKP10668.1" /db_xref="InterPro:IPR013243" /db_xref="JGIDB:Thasp1_21660" /translation="MSAHHASSGGGALATAYASGGSSTKSGSSKKARRDTSGDIRTKS SAATASRSIDAASERAAWRDIGSWRDLITGCEPANPQPDPSAGKHAITTAIDARDILE RSAYGDIPLEDRRVIMSCNGCGKALMTSSVTRHYDRPRLEAQARKRAEEEGKPRGSLH EKRGANRDRSASQERDKKDDARAEPDASSPATTPRKAGNRKRKLVNKSGDGPAAEPAV TPTKEEKQTKKQRTRAPDTPTKSERAKKADNASDSEGSDKETTVTDKGKKKDGEATSK KKKKEATDTEQDDAAATDDKSSEAGKEAETGKKKKKAKAKTPAKSTRNKGPIDLDKQC GVIGPNNLPCTRSLTCKSHSMSLKRAVVGRSQPYDVLYAAYQARAQALRALANGGVPP PPNARNRSGASANAAAAAAAAAAAAAAGGAGQDAGIDAEHELELVAQAMQAAPPQPLA MRPRPGAYAKRRRECFRMREMLLDALCGRTPDLVQYVVRWTGARPDPVASAVPIANNV SNSDGLDGASAAASMEGFANGTHGNTSVLGSDAAASMLDVTATDMSATSALPLSASML SPLAAQSGSLRIDEDMPISMLGVNMGLGALPIAMDPTLSASLSAAAHGAVGAMDVDPS PSLTSSAAAI" gene <36475..>37849 /locus_tag="THASP1DRAFT_21661" mRNA join(<36475..36653,36739..36764,36837..36937,37005..37074, 37158..37198,37300..37522,37582..37755,37821..>37849) /locus_tag="THASP1DRAFT_21661" /product="chitin synthase III catalytic subunit-domain-containing protein" CDS join(36475..36653,36739..36764,36837..36937,37005..37074, 37158..37198,37300..37522,37582..37755,37821..37849) /locus_tag="THASP1DRAFT_21661" /codon_start=1 /product="chitin synthase III catalytic subunit-domain-containing protein" /protein_id="RKP10669.1" /db_xref="InterPro:IPR022057" /db_xref="JGIDB:Thasp1_21661" /translation="MAIEFGKFGLCETAGYPLCRVFSDVRPRCNVQDYTASFPQSADL GKCRATTAWRSNRLLTTHRKYAAVGRKEMYIMFGFLAVTSVFQIINSAGFAGNDKTGK ILVSVQAGLAVGTFWTLLMNGIVGFQFVEDGTLPSTIGVFGSGAVVAIVTAFFSVDAS LNLTSLAEKAQQSNPESLALWILYFIVPLACAALYLVLQIVLVLRLLGTRKPLLMLLI AFVAMVMAQVFYILVSNPICAGTDGIIDGSFAATILTGVAAIFLYNYWDSITEDEWDE FGTA" gene complement(<39502..>40975) /locus_tag="THASP1DRAFT_2130" mRNA complement(join(<39502..39857,39914..40029,40089..40218, 40286..40467,40519..40554,40619..40632,40691..40735, 40820..40834,40907..>40975)) /locus_tag="THASP1DRAFT_2130" /product="DnaJ domain-containing protein" CDS complement(join(<39502..39857,39914..40029,40089..40218, 40286..40467,40519..40554,40619..40632,40691..40735, 40820..40834,40907..40975)) /locus_tag="THASP1DRAFT_2130" /note="GO_function: GO:31072; unfolded protein binding - heat shock protein binding [GO Ref 51082]" /codon_start=1 /product="DnaJ domain-containing protein" /protein_id="RKP10670.1" /db_xref="InterPro:IPR001305" /db_xref="InterPro:IPR001623" /db_xref="JGIDB:Thasp1_2130" /translation="MAEQDYYEVLGVDRDATADTIKKAYRKLAMKYHPDKNPDAGDEF KDISHAYDILGDPEKREHYDRYGPDGPGGMPGGGFGGDGPPMDFFADLFGAQFMDADD DDMFSGGGFFGGPPPHARGQRPRRTRGDDVKHPLEVTLEELYNGTTKRMSLEKTSICA TCSGKGGKRGPRPCKPCGGSGSIAKEHRMGGMVRRTRVTCRKCRGEGKILSEKDRCKR CGGKGIVPDKATLEVHVEKGMREGQRITMAGQGDQEPGITPGDVIFILEQKPHPRFER RGKHLWTEITVTLTEALCGFSKVLLTHLDGRGIVVTQQPGQVIRP" gene <41781..>42893 /locus_tag="THASP1DRAFT_21663" mRNA join(<41781..41926,41999..42019,42095..42106,42184..42313, 42397..42614,42821..>42893) /locus_tag="THASP1DRAFT_21663" /product="DHHC palmitoyltransferase-domain-containing protein" CDS join(41781..41926,41999..42019,42095..42106,42184..42313, 42397..42614,42821..42893) /locus_tag="THASP1DRAFT_21663" /note="GO_function: GO:8270 - zinc ion binding" /codon_start=1 /product="DHHC palmitoyltransferase-domain-containing protein" /protein_id="RKP10671.1" /db_xref="InterPro:IPR001594" /db_xref="JGIDB:Thasp1_21663" /translation="MDQASEETALEQGSRDVVITVKEDGQRRFCRKCQMDKPDRTHHC SVCGTCVLKMDHHCPWLNNCVGHHNQKFFYLFIFWGVFYTSFVGIASIFPVYDILISE NGLLEIDVNWLFVVLAGCIFGLCLAGFCSFHSYLLLTNQTTIETFQRSRYRSLGAPLR QDARAKQLNLFDLGWSMGDGRSFPLNEQAYEAVSMNEMV" gene complement(<43188..>43810) /locus_tag="THASP1DRAFT_12539" mRNA complement(join(<43188..43324,43398..43532,43612..>43810)) /locus_tag="THASP1DRAFT_12539" /product="cytochrome c oxidase subunit IV" CDS complement(join(43188..43324,43398..43532,43612..43810)) /locus_tag="THASP1DRAFT_12539" /note="GO_function: GO:4129 - cytochrome-c oxidase activity" /codon_start=1 /product="cytochrome c oxidase subunit IV" /protein_id="RKP10672.1" /db_xref="InterPro:IPR004203" /db_xref="JGIDB:Thasp1_12539" /translation="MNHLRNTAVRTLRAAPRRAQSTSVSAANIESTWSSLTAEQRATL ERQLDQRMAGDWKALSLDEKKAAYYIAFGPHGAREPLHKPGFTAKVLTGVTVCVGIST AIFAYARSRAIETPHTMSKEWREKTNEYMVEQKANPHTGMAAPDYTGKGFSGKY" gene <45647..>47405 /locus_tag="THASP1DRAFT_12520" mRNA join(<45647..45844,46010..46181,46247..46341,46414..46539, 46605..46839,46930..46983,47050..>47405) /locus_tag="THASP1DRAFT_12520" /product="hypothetical protein" CDS join(45647..45844,46010..46181,46247..46341,46414..46539, 46605..46839,46930..46983,47050..47405) /locus_tag="THASP1DRAFT_12520" /note="GO_process: GO:6511 - ubiquitin-dependent protein catabolic process" /codon_start=1 /product="hypothetical protein" /protein_id="RKP10673.1" /db_xref="InterPro:IPR001394" /db_xref="JGIDB:Thasp1_12520" /translation="MQDYKLSFNAPLIQPRGMLNSKNTCYMNAILQPLGHCPPFFNLF RDVGRLVAHSFNSKTPLVDSMYSLRNAFATLELGEPFAPEYIYETLRQQKKFDSLRGR QEDADEFLGSLLDALHEEFVASSKGAADSGDAEDSADSWLEVGKKQKTCQTRTMDMVE SPVSKMFWGRIRSVLQRTGSRDSATLEPFRSLHLDISSAGVNSIGDALANLTSVEELD GMMGIDGSMIRTTKQSLLEKLPPVLVLHLKRFHYDPVAGIQKLRRRIAYDMQFRVRSE MVAPALRGKLPEYTLIGVVYHHGMYAAGGHYTCDVRRQNGQWIRMDDTSMQPVSESDV CKTASSAADDASAAGDDGDGWSTVASGGLNGWSRTTEGDAYLLFYVDSSLLPESHQRT AAVATTPRKRAQNAWGERK" gene complement(<47667..>48548) /locus_tag="THASP1DRAFT_12542" mRNA complement(<47667..>48548) /locus_tag="THASP1DRAFT_12542" /product="small subunit ribosomal protein SAe" CDS complement(47667..>48548) /locus_tag="THASP1DRAFT_12542" /note="GO_component: GO:5622; ribosome - intracellular [GO Ref 5840]; GO_function: GO:3735 - structural constituent of ribosome; GO_process: GO:6412 - translation" /codon_start=1 /product="small subunit ribosomal protein SAe" /protein_id="RKP10674.1" /db_xref="InterPro:IPR001865" /db_xref="JGIDB:Thasp1_12542" /translation="PRCAATEEDIQRLLAAQCHIGTKNCERKMEPYLWRRRADGINLL NIGKTWEKIVFAARIIAAIENPADVVAISARPYGQRAVLKFAKYTGCQAISGRFTPGN FTNYITRSFKEPRLIIVTDPRTDYQAIKEASYVNIPVIALCDTDAPLNYVDVAIPTNN KGRHAIGLVWWLLAREVMRLRGRLDRSQPWDVMVDMFFYRDPEEQEKEAEAAGVEQLT EAAADGVWEAGVETTQWEASVMAEGINPAVAALTDANGTWSAETTTVVTTTEWTTTTT TEDWAADAGAGASSWGN" gene complement(<50659..>55213) /locus_tag="THASP1DRAFT_27558" mRNA complement(join(<50659..50868,50929..51000,51076..51205, 51277..51389,51454..51630,51701..51874,51951..52066, 52133..52261,52342..52403,52464..52582,52653..52823, 52896..53084,53156..53263,53346..53448,53521..53660, 53725..53889,53955..54320,54389..54541,54610..54740, 54832..54904,54967..55074,55145..>55213)) /locus_tag="THASP1DRAFT_27558" /product="FACT complex subunit spt16" CDS complement(join(50659..50868,50929..51000,51076..51205, 51277..51389,51454..51630,51701..51874,51951..52066, 52133..52261,52342..52403,52464..52582,52653..52823, 52896..53084,53156..53263,53346..53448,53521..53660, 53725..53889,53955..54320,54389..54541,54610..54740, 54832..54904,54967..55074,55145..55213)) /locus_tag="THASP1DRAFT_27558" /codon_start=1 /product="FACT complex subunit spt16" /protein_id="RKP10675.1" /db_xref="InterPro:IPR000994" /db_xref="InterPro:IPR013719" /db_xref="InterPro:IPR013953" /db_xref="InterPro:IPR029148" /db_xref="JGIDB:Thasp1_27558" /translation="MSKIQLDARAFNRRLRLLLSRWKQSQNTPDDLFQNADCLLVVVG IVGEEVLYQKSTALQTWLFGYEFPSTLLLLTKEKLHVVTTVILEGLKQGDKHGLLEVY KRTKNAEENAKIFQSIVEVIRGCNAKRIGVFPKDQFSGSFVNEWETAFGNSDVKCELV DVSTGMGQILAVKDEEEIWNSRMAAKLTSNMMKQFFVKEMSALIDEEKSITHDKFSEM IEETLVDERKRTAIRLPNEADADVIDWCYSPIVQSGGKFDLRSSAVSNKDLLHAGTIL CSFGVRYKSYCSNIGRTYLIDPQKSQEKNYAFLLDLQSKMIEMLRPGTPLCDVYNKAL GIIRAKRPDLEQHFVKNCGFSMGIEFRESAYVINAKNTRKLEAGMVINLSAGLQNLEA PNASDPKAVNYALLLVDTVLVTDNAPVLLTDCNKAANDISYFFKDDDDEGQSKDTSGK RTEPTRPTSTAVLKTKFRSEAQDDDSAEQRRLAHQKELAERRQREGIERFSEGKSTDA SANKRVLKKFESYRRIESLPKGLENCKIVVDRKAFTVILPIYGLAVPFHLSTLKNLSK SDEGDYVSLRFNFVTPGQPGGKKDEQPFDDPNATFVRALLYRSADVGRFTQLYKDIME LKKDLAKKDAEVKEMEDIVTQARLIELGGPRIRLPNVFLRPPLEGKRVPGELQIHQNG LRYQSPLRSDQRIDLLFSNIKHLFFQPCDNELIVLLHVHLHNPVMVGKKKTKDVQFYR EAADSQFDETGNRRRRMHYGDEDELEAEQEERRRRVHLNKEFKLFADRISDMSHPRVA VDVPFRDLGFSGVPFRSNVLLQPTTDCLIYLSDPPFLVITLADIEIAHLERVQFGLKN FDMVFVFKNFSQAPVHINAIPMAQLDNVKEWLNSVDVPFTEGPVNLNWPAIMKTINAD PAAFFQEGGWSFLRGESDNEDDASSESASEFEMSGDDARDESTDYSDQDSEDAYSNSD DDDDDGGSDGFDGSEGSGDDWDELDRKAKEYDDRRAKRKESEPITPSRKKARR" gene <55568..>56786 /locus_tag="THASP1DRAFT_27559" mRNA join(<55568..55739,55840..55932,56000..56178, 56256..>56786) /locus_tag="THASP1DRAFT_27559" /product="maintenance of mitochondrial structure and function-domain-containing protein" CDS join(55568..55739,55840..55932,56000..56178,56256..56786) /locus_tag="THASP1DRAFT_27559" /note="GO_function: GO:5515 - protein binding" /codon_start=1 /product="maintenance of mitochondrial structure and function-domain-containing protein" /protein_id="RKP10676.1" /db_xref="InterPro:IPR000555" /db_xref="InterPro:IPR024969" /db_xref="JGIDB:Thasp1_27559" /translation="MPAAQTTIPDKIVVHPVVLLSAVDHYNRVAKNTKKRVVGVLLGQ WHGKTVNVCNSFAVPFEENERDPSVWFLDHDYVESMMTMFKKVNAKEVMIGWYHSGPK LRGADLAINELLKRYTPTPVLVVIDVQPSTVGLPTDAYFAVEEIHDDGTATTRTFSHI PSSIEAEEAEEIGVEHLLRDIKDDAAASTLTTRLNNQLDSLRGLRGRIVLIREYLAKV VAGKLPVNHQIICNLQDIFNLLPDVSSPETVKAFSVQTNDQLLVIYLASLVRAVIALH NLIDNKLENQDAERAEKIGTKAEKSEAEAGAEDASNANDGASAETKDK" gene complement(<57095..>59790) /locus_tag="THASP1DRAFT_27560" mRNA complement(join(<57095..57194,57259..57439,57497..57680, 57751..57895,57959..58000,58064..58163,58222..58369, 58436..58538,58613..58728,58790..58866,58934..58994, 59050..59199,59267..59359,59572..>59790)) /locus_tag="THASP1DRAFT_27560" /product="plasma-membrane choline transporter-domain-containing protein" CDS complement(join(57095..57194,57259..57439,57497..57680, 57751..57895,57959..58000,58064..58163,58222..58369, 58436..58538,58613..58728,58790..58866,58934..58994, 59050..59199,59267..59359,59572..59790)) /locus_tag="THASP1DRAFT_27560" /codon_start=1 /product="plasma-membrane choline transporter-domain-containing protein" /protein_id="RKP10677.1" /db_xref="InterPro:IPR007603" /db_xref="JGIDB:Thasp1_27560" /translation="MMDPDAEHGDGTRTVAAAQRVALLSSQPTEYFDAPSVFYSVQDI ASFSDTSPHGTPSADIPLGTASFQSEGPPSASDIYAEDRPDADILTESHSMTDRLIPK ALAHEARSSTAGPPTSPAGQPRVHRDRPFAVLYMVSLAVFFISGLAMLFTTDSSTLGS LLPRSLYAALKNSLGYVGMLLVILCAIGATWLFLLRRYVRILVRVNILLVPVIAMAIF TWAMIEAFASPVLVNQTPSGGMIAASITALLTAGGYSYYMRKRWSRLQDSINIIELSL DVLKANPDLLAVGAFLTAVYIAFAALWLVFFNRVMLLGGVVPSPRGEPATWVPDSGAG WLAFFYVSFFFWTANVLNDVQRIATANVVSQWYFNREASGSMVGKSAAPALGVAAGQQ LGTAAFSASIITVTRLIRTVTFIASRLFFIRAGVIVVQGMQRWLIRSLASVSGFTPAY AGITGLGFLDSTREVTRMFRRNLVHRFDTDRTVRVVLTLTSVGLAAISGLSVYTYAAQ TLHTPHAALVATIGGSVQFFVSRFYTRVMTAISDAIFLCWTIDRDQNVNRCPAAHQAF AQAETA" CONTIG join(QUVU01000023.1:1..60746) //