LOCUS KX587352 2628 bp RNA linear VRL 23-DEC-2016 DEFINITION HIV-1 clone A5340A10.w006.156_F9_R1 from USA envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds. ACCESSION KX587352 VERSION KX587352.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 (HIV-1) ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 2628) AUTHORS Bar,K.J., Sneller,M.C., Harrison,L.J., Justement,J.S., Overton,E.T., Petrone,M.E., Salantes,D.B., Seamon,C.A., Scheinfeld,B., Kwan,R.W., Learn,G.H., Proschan,M.A., Kreider,E.F., Blazkova,J., Bardsley,M., Refsland,E.W., Messer,M., Clarridge,K.E., Tustin,N.B., Madden,P.J., Oden,K., O'Dell,S.J., Jarocki,B., Shiakolas,A.R., Tressler,R.L., Doria-Rose,N.A., Bailer,R.T., Ledgerwood,J.E., Capparelli,E.V., Lynch,R.M., Graham,B.S., Moir,S., Koup,R.A., Mascola,J.R., Hoxie,J.A., Fauci,A.S., Tebas,P. and Chun,T.W. TITLE Effect of HIV Antibody VRC01 on Viral Rebound after Treatment Interruption JOURNAL N. Engl. J. Med. 375 (21), 2037-2050 (2016) PUBMED 27959728 REFERENCE 2 (bases 1 to 2628) AUTHORS Bar,K., Sneller,M., Harrison,L., Justement,J., Overton,E., Petrone,M., Salantes,D., Seamon,C., Scheinfeld,B., Kwan,R., Learn,G., Proschan,M., Kreider,E., Blazkova,J., Bardsley,M., Refsland,E., Messer,M., Clarridge,K., Tustin,N., Madden,P., Oden,K., O'Dell,S., Jarocki,B., Shiakolas,A., Tressler,R., Doria-Rose,N., Bailer,R., Ledgerwood,J., Caparelli,E., Lynch,R., Graham,B., Moir,S., Koup,R., Mascola,J., Hoxie,J., Fauci,A., Tebas,P. and Chun,T.-W. TITLE Direct Submission JOURNAL Submitted (20-JUL-2016) Medicine, University of Pennsylvania, 3610 Hamilton Walk, Philadelphia, PA 19104, USA COMMENT Annotation information was provided by the author. Some of the information does not have GenBank feature identifiers and is being provided in the comment section. Information in this section is searchable in HIV Database at Los Alamos (hiv.lanl.gov). ##HIVDataBaseData-START## Patient code :: A5340A10 Patient sex :: M Viral load :: 3150 Sample tissue :: plasma ##HIVDataBaseData-END## FEATURES Location/Qualifiers source 1..2628 /organism="Human immunodeficiency virus 1" /mol_type="genomic RNA" /isolate="A5340A10.w006" /host="Homo sapiens" /db_xref="taxon:11676" /clone="A5340A10.w006.156_F9_R1" /geo_loc_name="USA" /collection_date="23-Nov-2015" /note="sequence from first rebound in VRC01 ATI trial; subtype: B" gene 1..2628 /gene="env" CDS 1..2628 /gene="env" /codon_start=1 /product="envelope glycoprotein" /protein_id="APA31462.1" /translation="MKVMGIKKNYQHWWKWGTMLLGILMICSATKQLWVTVYYGVPVW KEATTTLFCASDAKSYDTEVHNVWATHACVPTDPNPQEVVMGNVTEEFNMWKNDMVEQ MHEDIISLWDQSLKPCVKLTPLCVTLNCTDAIDNCTIVNGTTKCTKYNNSSTNTTSKS SVEMMGEIKNCSFNVTTGLSNKLQREYALFYKLDVVPIIESNGGNNSSNSSYRLISCN TSVITQACPKVTFDPIPIHYCAPAGFAILKCNNETFNGKGSCTNVSTVQCTHGIKPVV STQLLLNGSLAEKEIIIRSENFTDNAKTIIVHLNESVQINCTRPNNNTRKGIHLAAGR AIYTTGIIGDIRQAHCNISREKWEKTLRQVATKLSQQFNKDNTTIAFKPSSGGDPEIA THMFNCRGEFFYCNTTNLFNSTWHTNGTNSTDNGTDTITIQCRIKQIINMWQEVGKAM YAPPIQGQLNCSSNITGLLLTRDGGNDSNTTNNTEIFRPQGGNMRDNWRSELYKYKVV KIEPLGVAPTEAKRRVVQRERRAVGLGAMFLGFLGAAGSTMGAASLTLTVQARQLLSG IVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICT TAVPWNASWSNKTLGEIWNNMTWMQWEKEIDNYTDTIYRLIEESQNQQEKNEQDLLAL DKWANLWNWFDITNWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRL PATRGPDRPGGIEEEGGETDRDRSSPLADGLLAIIWVDLRSLCLFSYHRLRDLLLIVT RVVELLGRRGWETLKYWGSLIQYWSQELKTSAISLYNTTAIVVAEGTDRVIEIVQRAC RAICHIPRRIRQGLERSLL" gene <1..83 /gene="vpu" CDS <1..83 /gene="vpu" /codon_start=3 /product="vpu protein" /protein_id="APA31461.1" /translation="ESDGDQEELSALVEMGHHAPWDIDDL" gene <2212..2486 /gene="rev" CDS <2212..2486 /gene="rev" /codon_start=3 /product="rev protein" /protein_id="APA31460.1" /translation="PPPSHQGTRQARRNRRRRWRNRQRQIQSISGWIISHYLGRSAKP VPLQLPPLERLTLDCNEGCGTSGTQGVGNPQILGESHPVLEPGTKD" gene <2212..2302 /gene="tat" CDS <2212..2302 /gene="tat" /codon_start=2 /product="tat protein" /protein_id="APA31459.1" /translation="PASQPPGDPTGPEESKKKVEKQTETDPVH" BASE COUNT 929 a 460 c 604 g 635 t ORIGIN 1 atgaaagtga tggggatcaa gaagaattat cagcactggt ggaaatgggg caccatgctc 61 cttgggatat tgatgatctg tagtgctaca aaacaattgt gggtcacagt ctattatggg 121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg cctcagatgc taaatcatat 181 gatacagagg tacataatgt ttgggccaca catgcctgtg tacccacaga ccccaaccca 241 caagaagtag taatgggaaa tgtgacagaa gagtttaaca tgtggaaaaa tgacatggta 301 gaacagatgc atgaagatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaaa 361 ttaaccccac tctgtgttac tttaaattgc actgatgcta ttgacaattg cactattgtg 421 aatggtacta ccaagtgcac taagtataat aatagtagca ctaatactac cagtaagagt 481 agcgtggaaa tgatgggaga aataaagaat tgctctttca atgttaccac aggattaagt 541 aataagttgc agcgggaata tgcacttttt tataaacttg atgtagtacc aataatagag 601 agtaatggtg ggaataatag cagcaatagc agctataggt tgataagttg taacacctca 661 gttattacac aagcctgtcc aaaggtaacc tttgacccaa ttcccataca ttattgtgcc 721 ccggctggtt ttgcgattct aaagtgtaat aatgagacat tcaatgggaa aggatcatgc 781 acaaatgtca gcacagttca atgtacacat ggaattaagc cagtagtatc cactcaactg 841 ctgttaaatg gcagtctagc agaaaaggag ataataatta gatctgaaaa tttcacggac 901 aatgctaaaa ccataatagt acatctgaat gaatctgtac aaattaattg tacaagaccc 961 aacaacaata caagaaaagg tatacattta gcagcaggga gagcaattta tacaacagga 1021 ataataggag acataagaca agcacattgt aacattagta gagaaaaatg ggaaaaaact 1081 ttaagacagg tagctacaaa attaagccaa caatttaata aggataatac aacaatagca 1141 tttaaaccat cctcaggagg ggacccagaa attgcaacac acatgtttaa ttgtagagga 1201 gaatttttct attgtaatac aacaaacctg tttaatagta catggcatac taacggaaca 1261 aatagcactg acaatggtac tgacacaatc acaatccaat gcagaataaa acaaataata 1321 aacatgtggc aggaagtagg aaaagcaatg tatgcccctc ccatccaagg acaacttaac 1381 tgttcatcaa atattacagg gctgctatta acaagagatg gtggtaatga tagtaatact 1441 accaataaca ctgagatctt cagacctcaa ggaggaaata tgagagacaa ttggagaagt 1501 gaattatata aatataaagt agtaaaaatt gaaccattag gagtagcacc caccgaggca 1561 aagagaagag tggtgcagag agaaagaaga gcagtgggac taggagctat gttccttggg 1621 ttcttaggag cagcaggaag cactatgggc gcagcgtcat tgacgctgac ggtacaggcc 1681 agacaattat tgtctggtat agtgcaacag cagaacaatt tgctgagagc tattgaggcg 1741 caacagcatc tgttgcaact cacagtctgg ggcattaagc agctccaggc aagaatcctg 1801 gctgtggaaa gatacctaaa ggatcaacag ctcctgggga tttggggttg ctctggaaaa 1861 ctcatctgca ccactgctgt gccttggaat gctagttgga gtaataaaac tctgggggaa 1921 atttggaata acatgacctg gatgcagtgg gaaaaagaaa ttgacaatta cactgacaca 1981 atatacagat taattgagga atcgcaaaac caacaggaaa agaatgaaca agacttattg 2041 gcattagaca aatgggcaaa tttgtggaat tggtttgaca taacaaactg gctgtggtat 2101 ataaaaatat tcataatgat agtaggaggc ttgataggtt taagaatagt ttttactgtg 2161 ctttctatag tgaatagagt taggcaggga tactcaccat tgtcatttca gacccgcctc 2221 ccagccacca ggggacccga caggcccgga ggaatcgaag aagaaggtgg agaaacagac 2281 agagacagat ccagtccatt agcggatgga ttattagcca ttatctgggt cgatctgcga 2341 agcctgtgcc tcttcagcta ccaccgcttg agagacttac tcttgattgt aacgagggtt 2401 gtggaacttc tgggacgcag ggggtgggaa accctcaaat attgggggag tctcatccag 2461 tattggagcc aggaactaaa gactagtgct attagcttgt acaataccac cgccatagta 2521 gtagctgagg ggacagatag ggttatagaa atagtacaaa gagcttgtag agctatttgc 2581 cacataccta gaagaataag acagggcttg gaaaggagct tgctataa //