LOCUS KX096577 4121 bp RNA linear VRL 25-DEC-2016 DEFINITION Soybean yellow common mosaic virus, complete genome. ACCESSION KX096577 VERSION KX096577.1 KEYWORDS Viruses; ssRNA viruses; Sobemovirus; Soybean yellow common mosaic virus; Glycine max. SOURCE Soybean yellow common mosaic virus ORGANISM Soybean yellow common mosaic virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Sobemovirus. REFERENCE 1 (bases 1 to 4121) AUTHORS Jo,Y., Choi,H. and Cho,W.K. TITLE Direct Submission JOURNAL Submitted (18-APR-2016) Department of Agricultural Biotechnology, Seoul National University, 5103-ho, 200-dong, 1, Gwanak-ro, Gwanak-gu, Seoul 08826, Korea COMMENT ##Assembly-Data-START## Assembly Method :: trinity v. trinityrnaseq_r20140717; velvet v. velvet_1.2.10 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..4121 /organism="Soybean yellow common mosaic virus" /mol_type="genomic RNA" /isolate="China" /host="Glycine max" /db_xref="taxon:1080798" /geo_loc_name="China" /collection_date="04-Jan-2015" CDS 61..549 /codon_start=1 /product="putative movement protein" /protein_id="APP90900.1" /translation="MSDTVIVNFSLIRTRCVERFGVNTLPIGKHFIGSEEIPTGIGFV ERSFQVTAFGNYSVPERSPVRLIDCPVSCESTFRFEPVPLWLSIICRVCQSEANLIIN QELVPGYSESSKFVFCDAEGRPLRIRTRRGIQPSRFYHQEEKTICQSCVIQGCLRTRS WS" CDS 302..718 /codon_start=1 /transl_except=(pos:302..304,aa:Met) /product="Px" /protein_id="APP90903.1" /translation="MYLCGYLLSAEFVNLRLTLSSTRSWCLGIVKAASSCFVTPKGDL CELEHGEAFSPADFTTRKRRPFVSHASSRAVYVHALGREHGKLCHTPRLVHDGSIRVR SCSSGCGLDDPVRYRALVESVTRELPLRICPSATDS" CDS join(507..1742,1742..3400) /ribosomal_slippage /codon_start=1 /product="RdRp polyprotein" /protein_id="APP90904.1" /translation="MRHPGLFTYTLLVVNMASFAILLDSFMMGAYESDHVVPAVALMT LCATVLWLSLSLVSFLYGYVRVQLIPEVKRDRIYYVAQSAPYFDPTLGVMMKFAPSHG GPSIEAQVNPSWISLLDRSLKINGDEQSNESAILGSFYSAVKPGDEPASLVAIKSGAH TIGFGCRTKIDGGDVLLTANHVWNSAAKPDALAKSGKQVVIEDWEVPVSSDHQMLDFV AVRVPSCVWSKLGVKSTPLVCPSAKDVVTCYGGPTSDELLSSVGHCSPTEFAWKVTHN CPTAAGWSGTPLYSSRGVVGMHTGFENIGKMNRGVNMFYVANYLLRSQETLPPELSII EIPFEDVETRSYEFLEVEIVGRGKAKLGKREFAWIPESGKYWADQDEDELPPPPKVRD GKLVWADAQETLPWLEEPLNLPAGGRVATLADLYEIAGYNFTKGGVASSGGMPLRFVG QSSCQFRELCRKPTSEDVTRATATFPELSDYSWPDRGSKAELRSLLLQAGKFNPTRVP SNLEGACQNLLERYPASKPCSSLRSDAWSFDAVFEEVCKKAQSAEINEKASPGVPLAR LASTNKDIIRKHLQFVALCVTERLFLLSEVEGLENITPVEMVELGLCDPVRLFVKQEP HASRKVKEGRFRLISSVSLVDQLVERMLFGKQNQLEIAEWENIPSKPGMGLSLERQAR SLFDDLRIKHSRCPAAEADISGFDWSVQDWELWADVEMRIVLGGFGDKLSRAARNRFS CFMNSVFQLSDGTLIEQQQPGIMKSGSYCTSSTNSRIRCLMAELIGSPWCIAMGDDSV EGWVENAKDKYKELGHVCKDYKPCQTDIEGSLYEVEFCSHVVRQGRCWLNSWPKTLFK YLSEGKWFYEDLERELWSSPHWPRIRQYVVDNTPSVHKIIKPSPSYGEEANQTAASQG HSEHFGTTFRGSTPEAEEPKQASFCCDAASAYPGWGIHGPYCSGDYGASS" CDS 507..2231 /codon_start=1 /product="polyprotein" /protein_id="APP90901.1" /translation="MRHPGLFTYTLLVVNMASFAILLDSFMMGAYESDHVVPAVALMT LCATVLWLSLSLVSFLYGYVRVQLIPEVKRDRIYYVAQSAPYFDPTLGVMMKFAPSHG GPSIEAQVNPSWISLLDRSLKINGDEQSNESAILGSFYSAVKPGDEPASLVAIKSGAH TIGFGCRTKIDGGDVLLTANHVWNSAAKPDALAKSGKQVVIEDWEVPVSSDHQMLDFV AVRVPSCVWSKLGVKSTPLVCPSAKDVVTCYGGPTSDELLSSVGHCSPTEFAWKVTHN CPTAAGWSGTPLYSSRGVVGMHTGFENIGKMNRGVNMFYVANYLLRSQETLPPELSII EIPFEDVETRSYEFLEVEIVGRGKAKLGKREFAWIPESGKYWADQDEDELPPPPKVRD GKLVWADAQETLPWLEEPLNCQRAAGLRPLPTSMRLQATTSQREELPHQEACPSDLLA SRLASLESCVENLLQKMSHEPPLLSQSSPTTLGPIEAQKLSFAPSYCKQESLIPPESQ AILKELVKTSLSATPPPNPAQALDQTPGPSTQSSKKSARRRNRRKSTKRQAQGSPSPA SLPQTKTS" CDS 3210..4013 /codon_start=1 /product="coat protein" /protein_id="APP90902.1" /translation="MAKRLTKQQLAKAIANTLEPPSGAQPRKRRNRSRRRSAAMQPRP TQAGVSMAPIAQGTMVRLREPSMRTTGGITTLTHSELSTELSVTSTIVVASELVMPYS VGTWLRGVASNWSKYAWLSVRYTYLPACPSDTAGTIHMGFQYDMADTVPVSVNQLSNL RGYVSGQVWSGSSGLCFINGTKCLDTSSAISTTLDVSKLGKKWYPYKTSTDYTTAVGV DANIATPLVPARLVIAMLDGTSTTAVNAGRLYVTYTIQLVEPIASALNN" BASE COUNT 979 a 989 c 1084 g 1069 t ORIGIN 1 agagtctgga tctttgtacc tttgtgccac ctaagctggt attggtttat ctcacaacgt 61 atgtccgaca cagtgatcgt gaacttttca ctgatccgaa cccggtgcgt ggaacgcttt 121 ggcgtgaata ccctcccaat tggaaagcat ttcattggtt cagaggagat tcctacaggc 181 attggttttg ttgagcggtc ttttcaggtt acagcctttg ggaattattc agttcccgag 241 agaagcccag tcagattaat agactgccct gtatcgtgcg aaagcacatt caggtttgag 301 ccggtacctc tgtggctatc tattatctgc cgagtttgtc aatctgaggc taaccttatc 361 atcaaccagg agttggtgcc tgggtatagt gaaagcagca agttcgtgtt ttgtgacgcc 421 gaagggagac ctttgcgaat tagaacacgg agaggcattc agcccagcag attttaccac 481 caggaagaga agaccatttg tcagtcatgc gtcatccagg gctgtttacg tacacgctct 541 tggtcgtgaa catggcaagc tttgccatac tcctagactc gttcatgatg ggagcatacg 601 agtcagatca tgtagttccg gctgtggcct tgatgaccct gtgcgctacc gtgctttggt 661 tgagtctgtc actcgtgagc ttcctttacg gatatgtccg agtgcaactg attcctgaag 721 ttaagcgaga caggatctac tatgttgccc agtcagcccc atattttgat cctacattag 781 gagttatgat gaagttcgct cccagtcatg gtggacccag cattgaggct caagtaaacc 841 catcttggat cagcttgttg gatcgctctc tcaagataaa cggagatgag caatcgaacg 901 agtcagccat actgggtagc ttttactctg ctgttaagcc gggggatgaa ccagcaagtt 961 tggttgctat aaagagtggc gcccacacca tcggttttgg ttgtagaact aagatagatg 1021 gcggagatgt cctcttaaca gccaatcatg tttggaacag cgctgcgaaa ccagatgctc 1081 ttgccaagag tggcaagcag gtggtcatcg aggattggga agttcccgtg tcttctgatc 1141 accaaatgct cgattttgtg gccgtgcgag taccatcatg cgtttggtca aagctaggtg 1201 tcaagtcgac cccgctagtt tgcccgtccg ccaaggacgt tgtgacatgc tatgggggtc 1261 ctacctccga cgaacttctg tccagtgttg gtcattgtag tcccaccgag tttgcttgga 1321 aggtgacaca caattgcccc acagcggctg gttggagtgg aacacctctg tattcgtcca 1381 ggggagttgt tggcatgcac actggttttg aaaacattgg caagatgaac cgtggtgtca 1441 acatgtttta cgttgcaaac tacctcttga ggtctcaaga gactttacct ccggagttgt 1501 ccatcattga aatcccattc gaggatgttg agacacggag ttatgagttt ctggaagttg 1561 agattgtcgg gagaggtaag gctaaacttg gtaagcgtga gttcgcttgg attcctgaaa 1621 gcggaaaata ttgggctgat caagatgaag atgagctccc tccacccccg aaggtgaggg 1681 acgggaagct agtttgggct gatgctcaag agactcttcc gtggctagaa gagcctttaa 1741 actgccagcg ggcggcaggg ttgcgaccct tgccgacctc tatgagattg caggctacaa 1801 cttcacaaag ggaggagttg cctcatcagg aggcatgccc ctcagatttg ttggccagtc 1861 gtcttgccag tttagagagc tgtgtagaaa acctacttca gaagatgtca cacgagccac 1921 cgctactttc ccagagctct ccgactactc ttggcccgat agaggctcaa aagctgagct 1981 tcgctccctc ttattgcaag caggaaagtt taatcccacc agagtcccaa gcaatcttga 2041 aggagcttgt caaaacctcc ttgagcgcta ccccgcctcc aaaccctgct caagccttag 2101 atcagacgcc tggtccttcg acgcagtctt cgaagaagtc tgcaagaagg cgcaatcggc 2161 ggaaatcaac gaaaaggcaa gcccaggggt ccccctcgcc cgcctcgctt ccacaaacaa 2221 agacatcata aggaagcatt tgcagtttgt tgctctctgt gtaacagaaa gacttttcct 2281 actcagcgaa gttgagggtc tggagaacat tactcccgtt gaaatggttg agcttggcct 2341 ctgcgatcct gtcagacttt ttgtgaagca agaaccacac gcctcccgca aggttaaaga 2401 gggtaggttt aggctcattt cgtctgtctc actggttgat caacttgttg agcgcatgct 2461 tttcgggaag cagaatcagt tggagatagc tgagtgggag aatataccat ctaaacctgg 2521 aatgggtctt tccttggaaa gacaagccag gtcgctgttt gatgacttga ggatcaagca 2581 ttctcgttgt ccagctgccg aagctgacat ttcaggtttt gattggtctg tgcaagactg 2641 ggagttgtgg gctgatgttg agatgagaat agttctaggc ggcttcggag acaagttgtc 2701 tcgagctgct aggaacaggt tctcgtgctt catgaactca gtcttccagt tgtctgatgg 2761 tacattgata gagcaacagc agcccggaat aatgaagtcc ggatcttact gcacctcgtc 2821 caccaattcc agaatacgat gccttatggc tgagctgatt ggctcccctt ggtgtattgc 2881 catgggtgac gattcagttg aagggtgggt tgagaatgct aaagacaagt acaaggaatt 2941 gggccacgtg tgtaaggatt ataagccttg ccagaccgac attgaaggct ctctctacga 3001 agttgagttc tgctctcacg tagttagaca aggccgctgt tggttaaact catggcctaa 3061 gaccttgttc aagtacttgt ctgagggtaa gtggttctat gaagatctgg agcgagagct 3121 ctggtcgtct ccccactggc cccggattcg gcaatatgta gtggacaata ctccatcggt 3181 ccacaaaatt ataaaaccaa gtcctagtta tggcgaagag gctaaccaaa cagcagctag 3241 ccaaggccat agcgaacact ttggaaccac cttcaggggc tcaaccccgg aagcggagga 3301 accgaagcag gcgtcgttct gctgcgatgc agcctcggcc tacccaggct ggggtatcca 3361 tggcccctat tgctcagggg actatggtgc gtcttcgtga accgtcaatg cggacgactg 3421 gaggcattac aactctcact cactccgagc tctcaacaga gctctcagtt acgagtacga 3481 ttgttgttgc ctccgagcta gtgatgccct actcagtggg cacttggctg agaggtgtgg 3541 cttctaactg gtccaagtac gcttggcttt cagtgaggta tacttacctc cccgcctgtc 3601 cttctgacac ggcgggtact attcatatgg gtttccaata tgacatggct gatactgtgc 3661 ccgtatccgt taaccagctt tccaatctgc gtggttatgt gtcggggcag gtctggtcgg 3721 gttcatctgg cctgtgtttc attaatggaa ccaagtgcct ggacacctct tccgctatct 3781 ccaccactct ggatgtgagt aagcttggca agaagtggta cccgtataag actagcaccg 3841 actataccac cgcagtaggt gtggatgcta acattgcgac tcctctggtg ccagcaaggc 3901 tagtgatagc tatgctggat ggaacgagta ccaccgcggt aaacgctgga cgcctttacg 3961 ttacgtacac catccagttg gttgagccta ttgcctcagc cctgaacaac tgagaagttg 4021 taaaacatcc tccccgtcct tcggaaagat gggtgagtaa ttcacaaccc gcgaggtttt 4081 ggaaggtaat ctcgttaaaa cctttcacgc tagaaatgga g //