LOCUS KV862233 623171 bp DNA linear CON 16-NOV-2016 DEFINITION Lupinus angustifolius cultivar Tanjil unplaced genomic scaffold Scaffold_61_1, whole genome shotgun sequence. ACCESSION KV862233 MLAU01000000 VERSION KV862233.1 DBLINK BioProject: PRJNA299755 BioSample: SAMN04215042 KEYWORDS WGS. SOURCE Lupinus angustifolius (narrow-leaved blue lupine) ORGANISM Lupinus angustifolius Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; genistoids sensu lato; core genistoids; Genisteae; Lupinus. REFERENCE 1 (bases 1 to 623171) AUTHORS Hane,J.K., Ming,Y., Kamphuis,L.G., Nelson,M.N., Garg,G., Atkins,C.A., Bayer,P.E., Bravo,A., Bringans,S., Cannon,S., Edwards,D., Foley,R., Gao,L.L., Harrison,M.J., Huang,W., Hurgobin,B., Li,S., Liu,C.W., McGrath,A., Morahan,G., Murray,J., Weller,J., Jian,J. and Singh,K.B. TITLE A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution JOURNAL Plant Biotechnol. J. (2016) In press PUBMED 27557478 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 623171) AUTHORS Hane,J.K., Ming,Y., Kamphuis,L.G., Nelson,M.N., Garg,G., Atkins,C., Bayer,P., Bravo,A., Bringans,S., Cannon,S., Edwards,D., Foley,R., Gao,L.-L., Harrison,M., Huang,W., Hurgobin,B., Li,S., Liu,C.-W., Mcgrath,A., Morahan,G., Murray,J., Weller,J., Jian,J. and Singh,K. TITLE Direct Submission JOURNAL Submitted (28-SEP-2016) Molecular Plant Pathology & Crop Genomics, CSIRO, 147 Underwood Avenue, Perth, WA 6014, Australia COMMENT Sequencing was done with Illumina HiSeq 2500 paired-ends and Illumina HiSeq 2500 mate-paired. This assembly was constructed with CutAdapt (min length 25 bp, rounds 3, match length 5 bp) v. 1.1; FLASH (mate-paired 3' overlap read pairs discarded) v. 1.2.2; Kmerfreq v. 2015-05-28; SOAPdenovo2 (PE only) v. 2015-05-28; SSPACE2 (5 rounds per library insert size, ascending size order) v. 2.0; BGI GapCloser (5 rounds, PE libraries only) v. 2015-05-28 and 100kb BAC-end scaffolding - Bambus (range 50-400,000) v. 2015-05-28. Gaps of unknown size >10 bp were converted to 100bp, Repeatmasker(-no _is -norna -noint) and Tandem Repeats Finder (2 7 7 80 10 50 50 -f -d -m -h) were run, and then sequences were discarded if they were < 200 bp length OR >= 50% repetitive, simple repeat or unknown N bases. LG mapping was done via ePCR (<=2gap, <=2mis, amplicon 10-1000bp(Fluidigm) 10-5000bp(other)) and Glycine max synteny: MUMmer (promer --mum --filter, >=90% sim). ##Genome-Assembly-Data-START## Assembly Date :: 28-MAY-2015 Assembly Method :: CutAdapt v. 1.1; FLASH v. 1.2.2; Kmerfreq v. 2015-05-28; SOAPdenovo2 v. 2015-05-28; SSPACE2 v. 2.0; BGI GapCloser v. 2015-05-28 Assembly Name :: LupAngTanjil_v1.0 Long Assembly Name :: Lupinus_angustifolius_cv_Tanjil_pschrom_v 1.0 Genome Representation :: Full Expected Final Version :: No Genome Coverage :: 245.0x Sequencing Technology :: Illumina HiSeq 2500 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..623171 /organism="Lupinus angustifolius" /mol_type="genomic DNA" /submitter_seqid="Scaffold_61_1" /cultivar="Tanjil" /db_xref="taxon:3871" /chromosome="Unknown" /tissue_type="whole plant" /dev_stage="seedling" /geo_loc_name="Australia: Western Australia" gene complement(<3824..>6847) /locus_tag="TanjilG_27444" mRNA complement(join(<3824..4053,4294..4416,4497..4562, 4820..4889,4997..5138,5242..5316,5408..5561,6273..6344, 6451..>6847)) /locus_tag="TanjilG_27444" /product="hypothetical protein" CDS complement(join(3824..4053,4294..4416,4497..4562, 4820..4889,4997..5138,5242..5316,5408..5561,6273..6344, 6451..6847)) /locus_tag="TanjilG_27444" /codon_start=1 /product="hypothetical protein" /protein_id="OIV89838.1" /translation="MDPSKTPSIAEKPIPNPLPQTLTTESPPPSPLRKYKTRLADRLQ IDAVEESPEPPIVLRRRKCRDSSVAVAQSPKKVRKARKRSSEVEIREEKDIGLVEEVG KPRKRLNRVRSKKEKVNLVPSAPPSSLSSPSTIQHILSVSTVVVKSQFDTLDSGEAEE ENGIDFDRVGQLLGDLIMWKDLSKSVLWLGFGTLCFLSFSFTKGLNFSIFSAMSQLAI PFLGFSFFSNSILQRNQVEKKCEFKLKESDIFRLAKFILPALNFTISKMRVLFSGDPS MTLKVAPFLLLGAKYGHLITFWRLCAIGFFGSFTVPKLYSCYTAQIHHRAECIKSWLL KTWSACTHKKKMIAVLLMAFWNLSSVKTQICTAFILLVLFRYVKQHVIRQLEDEQARE SDKEPQQASVVAEPDEKETLQASVLAEPEEMEQQQPLVVWEEQGVPKLAP" assembly_gap 16457..16556 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<17390..>22097) /locus_tag="TanjilG_27445" mRNA complement(join(<17390..17655,19475..19543,19644..19737, 19837..19992,20314..20373,20524..20742,20850..21189, 21826..>22097)) /locus_tag="TanjilG_27445" /product="hypothetical protein" CDS complement(join(17390..17655,19475..19543,19644..19737, 19837..19992,20314..20373,20524..20742,20850..21189, 21826..22097)) /locus_tag="TanjilG_27445" /codon_start=1 /product="hypothetical protein" /protein_id="OIV89839.1" /translation="MEIGSISKKWNFEGNEWLNASAVSVRAVFNKLKENISNEDKRPS IYMCRVDPTENPMFRTTFIASDAIVSAVQSYNFNSYPPTLGLPDATRAIADYLSSDLP YQLSPDNVFLTIGGTQAIDIILPVLARPGANILLPRPGYPQYESRANCCRLEVRHFDL LPERGWEVDLDSLEAIADENTVAMVLINPSNPCGNVFTHQHLKRVAEAARKLGIFLIS DEVYAHIAFGSNPFVPMAVFSSIVPVITIGSLSKRWFVPGWRFGWIATCDPNGILKQT GILTLIKSYLEISTDPPTIIQAAVPEILKRTKEEFYAENLNIMREGANIFYDRCKEIP CLKCPHKPEGAMSIMVQINISQLEGIIDDVDFCVKLAEEESVLLLPGVSVGLKNWLRI SFAVERSALEDEGTDLGVPRPSLLVDGSRSVDASDLATDAPSLTETDVPSASRLTEAD APRLTDVDAPGLTEVHASHHAPSLIETYASHTPHATHLMQM" gene <32975..>42351 /locus_tag="TanjilG_27446" mRNA join(<32975..33085,33686..33790,34097..34194,34287..34429, 35363..35459,35608..35717,35803..35967,36861..37015, 37093..37173,37370..37490,38948..39054,39314..39445, 39726..39879,40190..40307,41275..41379,41566..41716, 42019..>42351) /locus_tag="TanjilG_27446" /product="hypothetical protein" CDS join(32975..33085,33686..33790,34097..34194,34287..34429, 35363..35459,35608..35717,35803..35967,36861..37015, 37093..37173,37370..37490,38948..39054,39314..39445, 39726..39879,40190..40307,41275..41379,41566..41716, 42019..42351) /locus_tag="TanjilG_27446" /codon_start=1 /product="hypothetical protein" /protein_id="OIV89840.1" /translation="MDAMIDKLTGAIFVFQIVVVMVLGIAGNVWKDTEAKKQWYVLYP DEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYANFIDWDHQMIDLETSIPSH ATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCINGIFYGNENGDALKDVELLNAV SSGSPDVVRFLTVMAICNTVIPTRSKTGDILYKAQSQDEDALVQAAAWMHMVFLNKNG NILEVKFNSKILQYEVLETLEFTSDRKRMSVVLKDYQNGKILLLSKGADEAILPYARA GQQTRNFIEAVDQYSHLGLRTLCLACRELKEDEYQEWSLMFKEASSTLVDREWRVAEV CQRVEHNLEVLGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNF ISPEPKGQLLSIDGKTEDEVRRSLERVLLTMRITTSEPKNVAFVVDGWALEIALNHYR KAFTELAILSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVG ISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQIF IHAYAYDKSEMEEISMVALSGCIWLQAFVVTMETNSFTTLQHIAIWGNLGFFYVINWI FSALPSSGMYTIMFRLCQQPSYWIAVFLMVAAGMGPVLAIKYFRYTYRPSKINTLQQA ERLGGPILSLGPIEPQPRSIEKEVSTLSITQPKDRSPVFEPLLSDSPNSTRRSLGAGA PFDFFQTQSRLPLFRHTRKDN" gene complement(<64468..>65652) /locus_tag="TanjilG_27447" mRNA complement(<64468..>65652) /locus_tag="TanjilG_27447" /product="hypothetical protein" CDS complement(64468..65652) /locus_tag="TanjilG_27447" /codon_start=1 /product="hypothetical protein" /protein_id="OIV89841.1" /translation="MSSVCTEQHKFHPSYQQQQLSPKKILRDIDIPPRKLLTRRATAT TYDGGADMFSDDFVQKFLPCNKLDDEDEESDDPYSSDYFRMYEFKVRRCTRSRSHDWT DCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGSCSRGDNCEFAHGVFECWLHPARYRT EACKDGKKCKRKVCFFAHTPRQLRILPVSSQHSTSSNDNISLCKKNINNKLFLNSSSG SNNNNCCMFCHHCVGAANSASPTSTLFNMSHFSPPLSPLSTTNSPPFSPVKRAISGVN TNSYKDVVCELMNSMEGLNFGDGSPISAAKARNFAWLDMSLNNDDQQFLVSPSASPFG WEDQFVLSPSTQNPTRSNVGKCSNFSSKFFSNDNKVVDADINNGLSCPAPDLEWVNEL LM" gene complement(<67740..>68093) /locus_tag="TanjilG_27448" mRNA complement(<67740..>68093) /locus_tag="TanjilG_27448" /product="hypothetical protein" CDS complement(67740..68093) /locus_tag="TanjilG_27448" /codon_start=1 /product="hypothetical protein" /protein_id="OIV89842.1" /translation="MAMARVLAFLTLFLLICRSEMSPNSSTLCDKVYWDFATCLRYLA GYESDPIPYCCKSIAELSSDAMQYTEAEAICQCIETLAMGADIRFDVSRVEDLPEKCH TPVTFPISNYMNCSK" gene complement(<73970..>76112) /locus_tag="TanjilG_27449" mRNA complement(join(<73970..74002,74081..74308,74622..74729, 74863..75378,75669..75710,75798..75918,76057..>76112)) /locus_tag="TanjilG_27449" /product="hypothetical protein" CDS complement(join(73970..74002,74081..74308,74622..74729, 74863..75378,75669..75710,75798..75918,76057..76112)) /locus_tag="TanjilG_27449" /codon_start=1 /product="hypothetical protein" /protein_id="OIV89843.1" /translation="MECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDA LIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEAMGKRRKDTPGTSVT RSQRNQRNVHSRRQNQVNDTQGSEDNDEDNDNNEKDSSSADERCTESRQSKRKRWTRV RPSQPSSSRASPDGGCIESDMDISRENQGTSRQVTRPRKLTWGRGGFRSHTRYGSGGG SNSKSSRSARVSKLVDHLRNLDENTDEFEIHLMLISLDKQSTPVLQQPYLCCRPTLSV KHLCEYVACQTPLAVEEVEILAVKGCSSTKFDKSDDDTSALICDKLTTLVIDPCKDEL EILKEHESLAGITSKCISKMEHLILAYRRKEAL" gene complement(<79214..>79528) /locus_tag="TanjilG_27450" mRNA complement(<79214..>79528) /locus_tag="TanjilG_27450" /product="hypothetical protein" CDS complement(79214..79528) /locus_tag="TanjilG_27450" /codon_start=1 /product="hypothetical protein" /protein_id="OIV89844.1" /translation="MPAQKRSFPDSLDDVDTSSQLPHHHLKHQQQQHPKQHEYEDEEN DEHEGQEEGEGEEEAEEQGDGEEEQDEDEDGEEAEDDKEEEEEEEEGQHQNDNKDEKP QG" assembly_gap 101124..101223 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 106867..106966 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 108476..108575 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 112396..112495 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 115182..115281 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 120447..120546 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 131867..131966 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 144864..144963 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 146089..146188 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 175798..175897 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 185188..185287 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 185803..185902 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 189264..189363 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 190362..190461 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <191993..>193939 /locus_tag="TanjilG_27451" mRNA join(<191993..192170,193254..>193939) /locus_tag="TanjilG_27451" /product="hypothetical protein" CDS join(191993..192170,193254..193939) /locus_tag="TanjilG_27451" /codon_start=1 /product="hypothetical protein" /protein_id="OIV89845.1" /translation="MGSSTHGFLGLMLLVITMLMLQATAHTFYVGGKHGWVPKPKERY NKWAERTRFQVNDTLHFKFHEKHDSVLVVDKESYLKCKTKHPIHKLGGHGHSEFKLDR SGPFYFISGRSKHCRRGQKLIVVVLALSHHKHPSHPPHHAPHHAPSHVPSHAPHHAPS HAPHHAHHHAPHHAPSHAPHHHAPHHHGPHHHAPHHAPHHHAPSHAPHHHAPSHAPHH HPPSHVPANAPSSVPRHAPASGPAHAHSWSPVHAPAPGPSSAASSRFGGSVSVAMGLG IWVVLVLSSFI" assembly_gap 197597..197696 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 198021..198120 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 198665..198764 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 203012..203111 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 203765..203864 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 212887..212986 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 213386..213485 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 225587..225686 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 249639..249738 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 251358..251457 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 251867..251966 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 252415..252514 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<252526..>252729) /locus_tag="TanjilG_27452" mRNA complement(<252526..>252729) /locus_tag="TanjilG_27452" /product="hypothetical protein" CDS complement(252526..252729) /locus_tag="TanjilG_27452" /codon_start=1 /product="hypothetical protein" /protein_id="OIV89846.1" /translation="MIQSHPHSSEAPRDNNFNVIEESIVIQRKLKPSMVSSFHHHHQN LMIPKEASFNNTDYNSFTNFSPN" assembly_gap 252958..253057 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 253563..253662 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 257031..257130 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 258273..258372 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 261404..261503 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 304161..304260 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<315687..>316022) /locus_tag="TanjilG_27453" mRNA complement(<315687..>316022) /locus_tag="TanjilG_27453" /product="hypothetical protein" CDS complement(315687..316022) /locus_tag="TanjilG_27453" /codon_start=1 /product="hypothetical protein" /protein_id="OIV89847.1" /translation="MNLASIRKVALEMKQKHALEGSHHLVVDMTKIFEDTRFFKLCVD LGRTYAMIHEQPFLLSDFERASISDLMDLSVLRAYTSSQVYTPEDLINFIDNVVAEEL HAYMRVGLG" gene complement(<319839..>324574) /locus_tag="TanjilG_27454" mRNA complement(join(<319839..319849,320188..320299, 320404..320460,321171..321240,321420..321453, 321581..321743,323062..323235,324145..324443, 324535..>324574)) /locus_tag="TanjilG_27454" /product="hypothetical protein" CDS complement(join(319839..319849,320188..320299, 320404..320460,321171..321240,321420..321453, 321581..321743,323062..323235,324145..324443, 324535..324574)) /locus_tag="TanjilG_27454" /codon_start=1 /product="hypothetical protein" /protein_id="OIV89848.1" /translation="MCFSMDHGRLALVAKNLTYKLQSVEKGKLILRRKQVVNSLLMGI NVKGKIEKVNGKELSYTEFAKRYMDKNDPVVVTGLMDLLHWRACVDWVTPLGQPNFHF FSSHFGASEVQVADCDMREFTDQKREEMSVSDFVEHCLRVEGSAVQCNNENHTSNDHS VPYLKDWHFVKEYPEYAAYITPMLFCDDWLNLYLDNFRMHTDSTTCQQNKEICSSDYR FVYMGVKGSWTPLHADVFRNMKNCVYNIFDEVSDSKFPGFKKEDTISINHNWFNAYNL SWVWNLLLRDYEEAKEYIEDIKDVCDDFEGLCQRNLAANTEDT" assembly_gap 336155..336254 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<339893..>343994) /locus_tag="TanjilG_27455" mRNA complement(join(<339893..340447,340800..341000, 341426..341512,341725..341781,341883..341978, 342080..342415,343106..343298,343417..343567, 343931..>343994)) /locus_tag="TanjilG_27455" /product="hypothetical protein" CDS complement(join(339893..340447,340800..341000, 341426..341512,341725..341781,341883..341978, 342080..342415,343106..343298,343417..343567, 343931..343994)) /locus_tag="TanjilG_27455" /codon_start=1 /product="hypothetical protein" /protein_id="OIV89849.1" /translation="MATGHLTCSHSFKERLDEALAGSYSIATICIFGWSSKAWCLEYL HVDVHTIVIDELCVAEYLKFKEDLVEGSSNSNFVLELDFEPFNTTFLRSTLNKSIGNG VEFLNHHLSSKLFHDRESIKPLLKFLRLHSYKGKTLMLNDKIRNLNSLQHVLKKVEEY LVTLTPETPYSEFDVKLQDIGLERGWGDTAESVLEIIQLLLNLLDTPDPYTLEKFLGR IPMVFNVVILSPHNYFAQDNVLGYPDTGGHVVYILDQVRALDNEMLNRIKKQGLNIKP RILIITRLLPDAIGTTCGERIEEDVAHELTKELQGKPNLIVGNYIDGNCCLFDTIGQY ESHTTFTLPRLYRVVHGIDVFDPKFNIVSPGADMSIYFPYIETKRRLTSFHPEIEELL YSSDQSKLIIFTMATLDRVKNITGLVEWYGKNARLRELVNLVVIAGDRRKESKDLEEK AEMKKMYGLVETYKLNDQFRWISSQMNKVRNGELYRVICDIKGAFVQPAVYEAFGLTV IEAMTCGLPTFSTFNGGPTEIIVHGKFGYHIDPYNGDHVADLLIDFFEKSKADPSHWD KISQGGLKRIHEK" gene complement(<350010..>350165) /locus_tag="TanjilG_27456" mRNA complement(<350010..>350165) /locus_tag="TanjilG_27456" /product="hypothetical protein" CDS complement(350010..350165) /locus_tag="TanjilG_27456" /codon_start=1 /product="hypothetical protein" /protein_id="OIV89850.1" /translation="MVHIPRSTVKGSSPPLKVVESKRPSVSIDAAAKQARLMLQRKMK RMNLMRR" assembly_gap 359317..359416 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <359600..>361237 /locus_tag="TanjilG_27457" mRNA join(<359600..359867,361020..>361237) /locus_tag="TanjilG_27457" /product="hypothetical protein" CDS join(359600..359867,361020..361237) /locus_tag="TanjilG_27457" /codon_start=1 /product="hypothetical protein" /protein_id="OIV89851.1" /translation="MIGDQGNLGRDRDNLARDHEKLTHKDRKNSGRDDLAHERENMTH DQGTTWAWSDRGTKRPRPSLGASGLAMMHQVGASDLAMTHQIGAPGDVGITSGGNSNG EDGDGSDNGVEVKVEAISRMLVEGEKNNSSVSCWSNYEMTMVVDAKAEAILEEAVWFG Q" assembly_gap 404504..404603 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 405664..405763 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 412345..412444 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 414704..414803 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 415176..415275 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 416430..416529 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 416855..416954 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 417348..417447 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 418710..418809 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 419530..419629 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 420150..420249 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 420815..420914 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 422343..422442 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 423212..423311 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 423664..423763 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 445114..445213 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 446068..446167 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 448948..449047 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 455345..455444 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 456260..456359 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 456982..457081 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 466879..466978 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 467298..467397 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 468181..468280 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 470069..470168 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 471379..471478 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 472657..472756 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 473210..473309 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 474315..474414 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 476295..476394 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<476957..>479236) /locus_tag="TanjilG_27458" mRNA complement(join(<476957..477399,477558..477681, 477772..477908,478214..478349,478438..478709, 479170..>479236)) /locus_tag="TanjilG_27458" /product="hypothetical protein" CDS complement(join(476957..477399,477558..477681, 477772..477908,478214..478349,478438..478709, 479170..479236)) /locus_tag="TanjilG_27458" /codon_start=1 /product="hypothetical protein" /protein_id="OIV89852.1" /translation="MGNCVCNSSAKVDAAHTSTTISAISKSDASSSSLSLPIEILSSP NLKPFTFNELKNSTSNFRPDTLLGEGGFGYVYKGWIDEQTFTASKPGSGMVVAVKKLK PEGYQGHKEWLTEVNYLGQLHHPNLVKLIGYCVEGEHRLLVYEFLSKGSLENHLFRRG AQPLSWPVRMKVAIDAARGLSFLHNAESQVIYRDFKASNILLDAEFNAKLSDFGLAKA GPTGDRTHVSTQVMGTRGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRTKG DVEQNLVDWAMPYLGDKRRLFRIMDIKLEGQYPQKGAYVAATLALKCLSIEAKARPPM TEVLATLKQIEVPKSSGRSSQSQRRRVHVPIKKSHAPINLTRKAAFPLPSHGQSPGVH " assembly_gap 513969..514068 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 518491..518590 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 522135..522234 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 525676..525775 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 526095..526194 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 526513..526612 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 553694..553793 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 560095..560194 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 561692..561791 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 562126..562225 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 562454..562553 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 563058..563157 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 563497..563596 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 564133..564232 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 565881..565980 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 566972..567071 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 567438..567537 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 569974..570073 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 573942..574041 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 575881..575980 /estimated_length=unknown /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<585322..>603479) /locus_tag="TanjilG_27459" mRNA complement(join(<585322..585472,585933..586496, 586810..587034,587144..587253,587428..587544, 587914..588009,588111..588446,588984..589116, 589294..589445,589536..589662,589775..589833, 599906..600127,600308..600525,600800..601072, 601334..601522,601612..601736,601821..601878, 602171..602324,602434..602539,603397..>603479)) /locus_tag="TanjilG_27459" /product="hypothetical protein" CDS complement(join(585322..585472,585933..586496, 586810..587034,587144..587253,587428..587544, 587914..588009,588111..588446,588984..589116, 589294..589445,589536..589662,589775..589833, 599906..600127,600308..600525,600800..601072, 601334..601522,601612..601736,601821..601878, 602171..602324,602434..602539,603397..603479)) /locus_tag="TanjilG_27459" /codon_start=1 /product="hypothetical protein" /protein_id="OIV89853.1" /translation="MDSATENLENTDSVFVWDENSQLYFHSSSGFYHDPNAGWYYSSR DGLYYKFEDGNYVPLGSNNDDCGETHLCNKTTPENPEQIYDNNNEDCSFFLENKCEAY QQTGTSANEAANDSVNSMSSPTSENPPPPSEWLEDTLIELYLSGYNNAAVRDDDTAAV PVETDDGYNSKLAADAYRNSYEAEGEWIPDPMDENGIADKTTVDEGIADSNTYELEEG EWIPDPEDENDIAGRTTIDEGILLDEERWQAQYGQVTESEKDLVSEFQIVDLWDWEMV RGSIKDGKDKAARLVGRLVKQSAKTHPSIPSSGGKLRSAPICEVHLNLVRVKTGQVYK LRNPSARYMASLSTYDSANPTKDWDFPQLSSSRKVTRLSRSSESTASASGEIPIEKAL FMSSQLSASKQIKCQYRDRAAARRILHGGYGKGPGQKNQVLGDDDTPSSPFSDCPQQA ASEALEMSFGVGSYARKLLENMGWKEERLNEALAGIRNEILALLSRIEAKGKGILHHH QVIDECEEIPKENREKLIDGVFGEVLRSTQEVVVLPPFVVLAGRPRPGVWEYLRVDVH AIVVNELCAAEYLKFKEDLIDGRPTLNKSIGNGVEFLNRHLSSKLFHDRESMKPLLEF LKLHSYNGKTLMLNDKIRNLNSLQHVLKKVEEYLVTLTLGTPYSEFEVKLQEIGLERG WGDTAESVLEIIQLLLDLLEAPDPSTLKKFLGRIPMVFNVVILSPHGYFAQDNVLGYP DTEGQVVYILDQVRALETEMLNRIKKQGLDIKPRVLIDVALELTKELQGKPDLIIGNY SDGNIVASLLAHKLGVTQETFEDKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDT IGQYESHIAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTETKCRLTSFHPEI EKLLYNYVENEEHICVLKDRNKPIIFTMARLDRVKNITGLVEWYGKNARLRELVNLVV VAGDRRKESKDLEEKAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRMICDIKG AFVQPAFYEAFGLTVIEAMTCGLPTFATCKGGPAEIIVHGKYGYHIDPYNGNHAADLL VDFFEKSKADPSHWDKISQGGLKRIHENVYGFWKHVTDLDHRERKRYLDMFYALKYRK LVYIFSHYPFNGFTYLLMI" CONTIG join(MLAU01017839.1:1..16456,gap(unk100),MLAU01017840.1:1..84567, gap(unk100),MLAU01017841.1:1..5643,gap(unk100), MLAU01017842.1:1..1509,gap(unk100),MLAU01017843.1:1..3820, gap(unk100),MLAU01017844.1:1..2686,gap(unk100), MLAU01017845.1:1..5165,gap(unk100),MLAU01017846.1:1..11320, gap(unk100),MLAU01017847.1:1..12897,gap(unk100), MLAU01017848.1:1..1125,gap(unk100),MLAU01017849.1:1..29609, gap(unk100),MLAU01017850.1:1..9290,gap(unk100), MLAU01017851.1:1..515,gap(unk100),MLAU01017852.1:1..3361, gap(unk100),MLAU01017853.1:1..998,gap(unk100), MLAU01017854.1:1..7135,gap(unk100),MLAU01017855.1:1..324, gap(unk100),MLAU01017856.1:1..544,gap(unk100), MLAU01017857.1:1..4247,gap(unk100),MLAU01017858.1:1..653, gap(unk100),MLAU01017859.1:1..9022,gap(unk100), MLAU01017860.1:1..399,gap(unk100),MLAU01017861.1:1..12101, gap(unk100),MLAU01017862.1:1..23952,gap(unk100), MLAU01017863.1:1..1619,gap(unk100),MLAU01017864.1:1..409, gap(unk100),MLAU01017865.1:1..448,gap(unk100), MLAU01017866.1:1..443,gap(unk100),MLAU01017867.1:1..505, gap(unk100),MLAU01017868.1:1..3368,gap(unk100), MLAU01017869.1:1..1142,gap(unk100),MLAU01017870.1:1..3031, gap(unk100),MLAU01017871.1:1..42657,gap(unk100), MLAU01017872.1:1..31894,gap(unk100),MLAU01017873.1:1..23062, gap(unk100),MLAU01017874.1:1..45087,gap(unk100), MLAU01017875.1:1..1060,gap(unk100),MLAU01017876.1:1..6581, gap(unk100),MLAU01017877.1:1..2259,gap(unk100), MLAU01017878.1:1..372,gap(unk100),MLAU01017879.1:1..1154, gap(unk100),MLAU01017880.1:1..325,gap(unk100), MLAU01017881.1:1..393,gap(unk100),MLAU01017882.1:1..1262, gap(unk100),MLAU01017883.1:1..720,gap(unk100), MLAU01017884.1:1..520,gap(unk100),MLAU01017885.1:1..565, gap(unk100),MLAU01017886.1:1..1428,gap(unk100), MLAU01017887.1:1..769,gap(unk100),MLAU01017888.1:1..352, gap(unk100),MLAU01017889.1:1..21350,gap(unk100), MLAU01017890.1:1..854,gap(unk100),MLAU01017891.1:1..2780, gap(unk100),MLAU01017892.1:1..6297,gap(unk100), MLAU01017893.1:1..815,gap(unk100),MLAU01017894.1:1..622, gap(unk100),MLAU01017895.1:1..9797,gap(unk100), MLAU01017896.1:1..319,gap(unk100),MLAU01017897.1:1..783, gap(unk100),MLAU01017898.1:1..1788,gap(unk100), MLAU01017899.1:1..1210,gap(unk100),MLAU01017900.1:1..1178, gap(unk100),MLAU01017901.1:1..453,gap(unk100), MLAU01017902.1:1..1005,gap(unk100),MLAU01017903.1:1..1880, gap(unk100),MLAU01017904.1:1..37574,gap(unk100), MLAU01017905.1:1..4422,gap(unk100),MLAU01017906.1:1..3544, gap(unk100),MLAU01017907.1:1..3441,gap(unk100), MLAU01017908.1:1..319,gap(unk100),MLAU01017909.1:1..318, gap(unk100),MLAU01017910.1:1..27081,gap(unk100), MLAU01017911.1:1..6301,gap(unk100),MLAU01017912.1:1..1497, gap(unk100),MLAU01017913.1:1..334,gap(unk100), MLAU01017914.1:1..228,gap(unk100),MLAU01017915.1:1..504, gap(unk100),MLAU01017916.1:1..339,gap(unk100), MLAU01017917.1:1..536,gap(unk100),MLAU01017918.1:1..1648, gap(unk100),MLAU01017919.1:1..991,gap(unk100), MLAU01017920.1:1..366,gap(unk100),MLAU01017921.1:1..2436, gap(unk100),MLAU01017922.1:1..3868,gap(unk100), MLAU01017923.1:1..1839,gap(unk100),MLAU01017924.1:1..47191) //