LOCUS KU954086 7264 bp RNA linear VRL 31-MAR-2017 DEFINITION Senecavirus A strain ATCC PTA-5343, complete genome. ACCESSION KU954086 VERSION KU954086.1 KEYWORDS . SOURCE Senecavirus A ORGANISM Senecavirus A Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Senecavirus; Senecavirus valles. REFERENCE 1 (bases 1 to 7264) AUTHORS Zhang,J., Li,G., Zheng,Y. and Chen,Q. TITLE Full-length genome sequences of U.S. historical and contemporary Senecavirus A isolates JOURNAL Unpublished REFERENCE 2 (bases 1 to 7264) AUTHORS Zhang,J., Li,G., Zheng,Y. and Chen,Q. TITLE Direct Submission JOURNAL Submitted (21-MAR-2016) Veterinary Diagnostic and Production Animal Medicine, Iowa State University, 1800 Christensen Drive, Ames, IA 50011, USA COMMENT ##Assembly-Data-START## Assembly Method :: DNAStar v. Lasergene 11 Core Suite Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7264 /organism="Senecavirus A" /mol_type="genomic RNA" /strain="ATCC PTA-5343" /host="swine" /culture_collection="ATCC:PTA-5343" /db_xref="taxon:390157" /geo_loc_name="USA" CDS 662..7207 /codon_start=1 /product="polyprotein" /protein_id="AQM55549.1" /translation="MQNSHFSFDTASGTFEDVTGTKVKIVEYPRSVNNGVYDSSTHLE ILNLQGEIEILRSFNEYQIRAAKQQLGLDIVYELQGNVQTTSKNDFDSRGNNGNMTFN YYANTYQNSVDFSTSSSASGAGPGNSRGGLAGLLTNFSGILNPLGYLKDHNTEEMENS ADRVTTQTAGNTAINTQSSLGVLCAYVEDPTKSDPPSSSTDQPTTTFTAIDRWYTGRL NSWTKAVKTFSFQAVPLPGAFLSRQGGLNGGAFTATLHRHFLMKCGWQVQVQCNLTQF HQGALLVAMVPETTLDVKPDGKAKSLQELNEEQWVEMSDDYRTGKNMPFQSLGTYYRP PNWTWGPNFINPYQVTVFPHQILNARTSTSVDINVPYIGETPTQSSETQNSWTLLVMV LVPLDYKEGATTDPEITFSVRPTSPYFNGLRNRYTAGTDEEQGPIPTAPRENSLMFLS TLPDDTVPAYGNVRTPPVNYLPGEITDLLQLARIPTLMAFERVPEPVPASDTYVPYVA VPTQFDDRPLISFPITLSDPVYQNTLVGAISSNFANYRGCIQITLTFCGPMMARGKFL LSYSPPNGTQPQTLSEAMQCTYSIWDIGLNSSWTFVVPYISPSDYRETRAITNSVYSA DGWFSLHKLTKITLPPDCPQSPCILFFASAGEDYTLRLPVDCNPSYVFHSTDNAETGV IEAGNTDTDFSGELAAPGSNHTNVKFLFDRSRLLNVIKVLEKDAVFPRPFPTQEGAQQ DDGYFCLLTPRPTVASRPATRFGLYANPSGSGVLANTSLDFNFYSLACFTYFRSDLEV TVVSLEPDLEFAVGWFPSGSEYQASSFVYDQLHVPFHFTGRTPRAFASKGGKVSFVLP WNSVSSVLPVRWGGASKLSSATRGLPAHADWGTIYAFVPRPNEKKSTAVKHVAVYIRY KNARAWCPSMLPFRSYKQKMLMQSGDIETNPGPASDNPILEFLEAENDLVTLASLWKM VHSVQQTWRKYVKNDDFWPNLLSELVGEGSVALAATLSNQASVKALLGLHFLSRGLNY TDFYSLLIEKCSSFFTVEPPPPPAENLMTKPSVKSKFRKLFKMQGPMDKVKDWNQIAA GLKNFQFVRDLVKEVVDWLQAWINKEKASPVLQYQLEMKKLGPVALAHDAFMAGSGPP LSDDQIEYLQNLKSLALTLGKTNLAQSLTTMINAKQSSAQRVEPVVVVLRGKPGCGKS LASTLIAQAVSKRLYGSQSVYSLPPDPDFFDGYKGQFVTLMDDLGQNPDGQDFSTFCQ MVSTAQFLPNMADLAEKGRPFTSNLIIATTNLPHFSPVTIADPSAVSRRINYDLTLEV SEAYKKHTRLNFDLAFRRTDAPPIYPFAAHVPFVDVAVRFKNGHQNFNLLELVDSICT DIRAKQQGARNMQTLVLQSPNENDDTPVDEALGRVLSPAAVDEALVDLTPEADPVGRL AILAKLGLALAAVTPGLIILAVGLYRYFSGSDADQEETESEGSVKAPRSENAYDGPKK NSKPPGALSLMEMQQPNVDMGFEAAVAKKVVVPITFMVPNRPSGLTQSALLVTGRTFL INEHTWSNPSWTSFTIRGEVHTRDEPFQTVHFTHHGIPTDLMMVRLGPGNSFPNNLDK FGLDQMPARNSRVVGVSSSYGNFFFSGNFLGFVDSITSEQGTYARLFRYRVTTYKGWC GSALVCEAGGVRRIIGLHSAGAAGIGAGTYISKLGLIKALKHLGEPLATMQGLMTELE PGITVHVPRKSKLRKTTAHAVYKPEFEPAVLSKFDPRLNKDVDLDEVIWSKHTANVPY QPPLFYTYMSEYAHRVFSFLGKDNDILTVKEAILGIPGLDPMDPHTAPGLPYAINGLR RTDLVDFVNGTVDAALAVQIQKFLDGDYSDHVFQTFLKDEIRPSEKVRAGKTRIVDVP SLAHCIVGRMLLGRFAAKFQSHPGFLLGSAIGSDPDVFWTVIGAQLEGRKNTYDVDYS AFDSSHGTGSFEALISHFFTVDNGFSPALGPYLRSLAVSVHAYGERRIKITGGLPSGC AATSLLNTVLNNVIIRTALALTYKEFEYDMVDIIAYGDDLLVGTDYDLDFNEVARRAA KLGYKMTPANKGSVFPPTSSLSDAVFLKRKFVQNNDGLYKPVMDLKNLEAMLSYFKPG TLLEKLQSVSMLAQHSGKEEYDRLMHPFADYGAVPSHEYLQARWRALFD" BASE COUNT 1710 a 2052 c 1699 g 1803 t ORIGIN 1 aaggaaggac tgggcatcag ggcccagccc ttcctttccc cttccggggg gttaaccggc 61 tgtgtttgct agaggcacag aggggcaaca tccaacctgc ttttgcgggg aacggtgcgg 121 ctccgattcc tgcgtcgcca aaggtgttag cgcacccaaa cggcgcacct accaatgtta 181 ttggtgtggt ctgcgagttc tagcctactc gtttctcccc cgaccattca ctcacccacg 241 aaaagtgtgt tgtaaccata agatttaacc cccgcacggg atgtgcgata accgtaagac 301 tggctcaagc gcggaaagcg ctgtaaccac atgctgttag tccctttatg gctgcaagat 361 ggctacccac ctcggatcac tgaactggag ctcgaccctc cttagtaagg gaaccgagag 421 gccttcgtgc aacaagctcc gacacagagt ccacgtgact gctaccacca tgagtacatg 481 gttctcccct ctcgacccag gacttctttt tgaatatcca cggctcgatc cagagggtgg 541 ggcatgaccc ctagcatagc gagctacagc gggaactgta gctaggcctt agcgtgcctt 601 ggatactgcc tgatagggcg acggcctagt cgtgtcggtt ctataggtag cacatacaaa 661 tatgcagaac tctcattttt ctttcgatac agcctctggc acctttgaag atgtaaccgg 721 aacaaaagtc aagatcgttg aataccccag atcggtgaac aatggtgttt acgattcgtc 781 tactcatttg gagatactga acctacaggg tgaaattgaa attttaaggt ctttcaatga 841 ataccaaatt cgcgccgcca aacaacaact cggactggac atcgtgtacg aactacaggg 901 taatgttcag acaacgtcaa agaatgattt tgattcccgt ggcaataatg gtaacatgac 961 cttcaattac tacgcaaaca cttatcagaa ttcagtagac ttctcgacct cctcgtcggc 1021 gtcaggcgcc ggacccggga actcccgggg cggattagcg ggtctcctca caaatttcag 1081 tggaatcttg aaccctcttg gctacctcaa agatcacaac accgaagaaa tggaaaactc 1141 tgctgatcga gtcacaacgc aaacggcggg caacactgcc ataaacacgc aatcatcatt 1201 gggtgtgttg tgtgcctacg ttgaagaccc gaccaaatct gatcctccgt ccagcagcac 1261 agatcaaccc accaccactt tcactgccat cgacaggtgg tacactggac gtctcaattc 1321 ttggacaaaa gctgtaaaaa ccttctcttt tcaggccgtc ccgcttcccg gggcctttct 1381 gtctaggcag ggaggcctca acggaggggc cttcacagct accctacata gacacttttt 1441 gatgaagtgc gggtggcagg tgcaggtcca atgtaatttg acacaattcc accaaggcgc 1501 tcttcttgtt gccatggttc ctgaaaccac ccttgatgtc aagcccgacg gtaaggcaaa 1561 gagcttacag gagctgaatg aagaacagtg ggtggaaatg tctgacgatt accggaccgg 1621 gaaaaacatg ccttttcagt ctcttggcac atactatcgg ccccctaact ggacttgggg 1681 tcccaatttc atcaacccct atcaagtaac ggttttccca caccaaattc tgaacgcgag 1741 aacctctacc tcggtagaca taaacgtccc atacatcggg gagaccccca cgcaatcctc 1801 agagacacag aactcctgga ccctcctcgt tatggtgctc gttcccctag actataagga 1861 aggagccaca actgacccag aaattacatt ttctgtaagg cctacaagtc cctacttcaa 1921 tgggcttcgc aaccgctaca cggccgggac ggacgaagaa caggggccca ttcctacggc 1981 acccagagaa aattcgctta tgtttctctc aaccctccct gacgacactg tccctgctta 2041 cgggaatgtg cgtacccctc ctgtcaatta cctccctggt gaaataaccg accttttgca 2101 actggcccgc atacccactc tcatggcatt tgagcgggtg cctgaacccg tgcctgcctc 2161 agacacatat gtgccctacg ttgccgttcc cacccagttc gatgacaggc ctctcatctc 2221 cttcccgatc accctttcag atcccgtcta tcagaacacc ctggttggcg ccatcagttc 2281 aaatttcgcc aattaccgtg ggtgtatcca aatcactctg acattttgtg gacccatgat 2341 ggcgagaggg aaattcctgc tctcgtattc tcccccaaat ggaacgcaac cacagactct 2401 ttccgaagct atgcagtgca catactctat ttgggacata ggcttgaact ctagttggac 2461 cttcgtcgtc ccctacatct cgcccagtga ctaccgtgaa actcgagcca ttaccaactc 2521 ggtttactcc gctgatggtt ggtttagcct gcacaagttg accaaaatta ctctaccacc 2581 tgactgtccg caaagtccct gcattctctt tttcgcttct gctggtgagg attacactct 2641 ccgtctcccc gttgattgta atccttccta tgtgttccac tccaccgaca acgccgagac 2701 cggggttatt gaggcgggta acactgacac cgatttctct ggtgaactgg cggctcctgg 2761 ctctaaccac actaatgtca agttcctgtt tgatcgatct cgattattga atgtaatcaa 2821 ggtactggag aaggacgccg ttttcccccg ccctttccct acacaagaag gtgcgcagca 2881 ggatgatggt tacttttgtc ttctgacccc ccgcccaaca gtcgcttccc gacccgccac 2941 tcgtttcggc ctgtacgcca atccgtccgg cagtggtgtt cttgctaaca cttcactgga 3001 cttcaatttt tatagcttgg cctgtttcac ttactttaga tcggaccttg aggttacggt 3061 ggtctcacta gagccggatc tggaatttgc tgtagggtgg tttccttctg gcagtgaata 3121 ccaggcttcc agctttgtct acgaccagct gcatgtgccc ttccacttta ctgggcgcac 3181 tccccgcgct ttcgctagca agggtgggaa ggtatctttc gtgctccctt ggaactctgt 3241 ctcgtctgtg ctccccgtgc gctggggggg ggcttccaag ctctcttctg ctacgcgggg 3301 tctaccggcg catgctgatt gggggactat ttacgccttt gtcccccgtc ctaatgagaa 3361 gaaaagcacc gctgtaaaac acgtggccgt gtacattcgg tacaagaacg cacgtgcctg 3421 gtgccccagc atgcttccct ttcgcagcta caagcagaag atgctgatgc aatctggcga 3481 tatcgagacc aatcctggtc ctgcttctga caacccaatt ttggagtttc ttgaagcaga 3541 aaatgatcta gtcactctgg cctctctctg gaagatggtg cactctgttc aacagacctg 3601 gagaaagtat gtgaagaacg atgatttttg gcccaattta ctcagcgagc tagtggggga 3661 aggctctgtc gccttggccg ccacgctatc caaccaagct tcagtaaagg ctcttttggg 3721 cctgcacttt ctctctcggg ggctcaatta cactgacttt tactctttac tgatagagaa 3781 atgctctagt ttctttaccg tagaaccacc tcctccacca gctgaaaacc tgatgaccaa 3841 gccctcagtg aagtcgaaat tccgaaaact gtttaagatg caaggaccca tggacaaagt 3901 caaagactgg aaccaaatag ctgccggctt gaagaatttt caatttgttc gtgacctagt 3961 caaagaggtg gtcgattggc tgcaggcctg gatcaacaaa gagaaagcca gccctgtcct 4021 ccagtaccag ttggagatga agaagctcgg gcctgtggcc ttggctcatg acgctttcat 4081 ggctggttcc gggccccctc ttagcgacga ccagattgaa tacctccaga acctcaaatc 4141 tcttgcccta acactgggga agactaattt ggcccaaagt ctcaccacta tgatcaatgc 4201 caaacaaagt tcagcccaac gagttgaacc cgttgtggtg gtccttagag gcaagccggg 4261 atgcggcaag agcttggcct ctacgttgat tgcccaggct gtgtccaagc gcctctatgg 4321 ctcccaaagt gtatattctc ttcccccaga tccagatttc ttcgatggat acaaaggaca 4381 gttcgtgacc ttgatggatg atttgggaca aaacccggat ggacaagatt tctccacctt 4441 ttgtcagatg gtgtcgaccg cccaatttct ccccaacatg gcggaccttg cagagaaagg 4501 gcgtcccttt acctccaatc tcatcattgc aactacaaat ctcccccact tcagtcctgt 4561 caccattgct gatccttctg cagtctctcg ccgtatcaac tacgatctga ctctagaagt 4621 atctgaggcc tacaagaaac acacacggct gaattttgac ttggctttca ggcgcacaga 4681 cgcccccccc atttatcctt ttgctgccca tgtgcccttt gtggacgtag ctgtgcgctt 4741 caaaaatggt caccagaatt ttaatctcct agagttggtc gattccattt gtacagacat 4801 tcgagccaag caacaaggtg cccgaaacat gcagactctg gttctacaga gccccaacga 4861 gaatgatgac acccccgtcg acgaggcgtt gggtagagtt ctctcccccg ctgcggtcga 4921 tgaggcgctt gtcgacctca ctccagaggc cgacccggtt ggccgtttgg ctattcttgc 4981 caagctaggt cttgccctag ctgcggtcac ccctggtctg ataatcttgg cagtgggact 5041 ctacaggtac ttctctggct ctgatgcaga ccaagaagaa acagaaagtg agggatctgt 5101 caaggcaccc aggagcgaaa atgcttatga cggcccgaag aaaaactcta agccccctgg 5161 agcactctct ctcatggaaa tgcaacagcc caacgtggac atgggctttg aggctgcggt 5221 cgctaagaaa gtggtcgtcc ccattacctt catggttccc aacagacctt ctgggcttac 5281 acagtccgct cttctggtga ccggccggac cttcctaatc aatgaacata catggtccaa 5341 tccctcctgg accagcttca caatccgcgg tgaggtacac actcgtgatg agcccttcca 5401 aacggttcat ttcactcacc acggtattcc cacagatctg atgatggtac gtctcggacc 5461 gggcaattct ttccctaaca atctagacaa gtttggactt gaccagatgc cggcacgcaa 5521 ctcccgtgtg gttggcgttt cgtccagtta cggaaacttc ttcttctctg gaaatttcct 5581 cggatttgtt gattccatca cctctgaaca aggaacttac gcaagactct ttaggtacag 5641 ggtgacgacc tacaaaggat ggtgcggctc ggccctggtc tgtgaggccg gtggcgtccg 5701 acgcatcatt ggcctgcatt ctgctggcgc cgccggtatc ggcgccggga cctatatctc 5761 aaaattagga ctaatcaaag ccctgaaaca cctcggtgaa cctttggcca caatgcaagg 5821 actgatgact gaattagagc ctggaatcac cgtacatgta ccccggaaat ccaaattgag 5881 aaagacgacc gcacacgcgg tgtacaaacc ggagtttgag cctgctgtgt tgtcaaaatt 5941 tgatcccaga ctgaacaagg atgttgactt ggatgaagta atttggtcta aacacactgc 6001 caatgtccct taccaacctc ctttgttcta cacatacatg tcagagtacg ctcatcgagt 6061 cttctccttc ttggggaaag acaatgacat tctgaccgtc aaagaagcaa ttctgggcat 6121 ccccggacta gaccccatgg atccccacac agctccgggt ctgccttacg ccatcaacgg 6181 ccttcgacgt actgatctcg tcgattttgt gaacggtaca gtagatgcgg cgctggctgt 6241 acaaatccag aaattcttag acggtgacta ctctgaccat gtcttccaaa cttttctgaa 6301 agatgagatc agaccctcag agaaagtccg agcgggaaaa acccgcattg ttgatgtgcc 6361 ctccctggcg cattgcattg tgggcagaat gttgcttggg cgctttgctg ccaagtttca 6421 atcccatcct ggctttctcc tcggctctgc tatcgggtct gaccctgatg ttttctggac 6481 cgtcataggg gctcaactcg aggggagaaa gaacacgtat gacgtggact acagtgcctt 6541 tgactcttca cacggcactg gctccttcga ggctctcatc tctcactttt tcaccgtgga 6601 caatggtttt agccctgcgc tgggaccgta tctcagatcc ctggctgtct cggtgcacgc 6661 ttacggcgag cgtcgcatca agattaccgg tggcctcccc tccggttgtg ccgcgaccag 6721 cctgctgaac acagtgctca acaatgtgat catcaggact gctctggcat tgacttacaa 6781 ggaatttgaa tatgacatgg ttgatatcat cgcctacggt gacgaccttc tggttggcac 6841 ggattacgat ctggacttca atgaggtggc acgacgcgct gccaagttgg ggtataagat 6901 gactcctgcc aacaagggtt ctgtcttccc tccgacttcc tctctttccg atgctgtttt 6961 tctaaagcgc aaattcgtcc aaaacaacga cggcttatac aaaccagtta tggatttaaa 7021 gaatttggaa gccatgctct cctacttcaa accaggaaca ctactcgaga agctgcaatc 7081 tgtttctatg ttggctcaac attctggaaa agaagaatat gatagattga tgcacccctt 7141 cgctgactac ggtgccgtac cgagtcacga gtacctgcag gcaagatgga gggccttgtt 7201 cgactgaccc agatagccca aggcgcttcg gtgctgccgg cgattctggg agaactcagt 7261 cgga //