LOCUS KU746835 5040 bp DNA circular VRL 09-AUG-2016 DEFINITION Betapolyomavirus tertihominis isolate NMKI001, complete genome. ACCESSION KU746835 VERSION KU746835.1 KEYWORDS . SOURCE Betapolyomavirus tertihominis ORGANISM Betapolyomavirus tertihominis Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Betapolyomavirus. REFERENCE 1 (bases 1 to 5040) AUTHORS Dehority,W.N., Eikman,M.M., Schwalm,K.C., Denson,J.L., Gross,S.M., Schroth,G.P., Burchiel,S.W., Young,S.A. and Dinwiddie,D.L. TITLE Complete Genome Sequencing of a KI Polyomavirus Isolated from an Otherwise Healthy Child with Severe Lower Respiratory Tract Infection JOURNAL Unpublished REFERENCE 2 (bases 1 to 5040) AUTHORS Dehority,W.N., Eikman,M.M., Schwalm,K.C., Denson,J.L., Gross,S.M., Schroth,G.P., Burchiel,S.W., Young,S.A. and Dinwiddie,D.L. TITLE Direct Submission JOURNAL Submitted (22-FEB-2016) Pediatrics, University of New Mexico, 1 University of New Mexico, MSC10 5590, Albuquerque, NM 87131, USA FEATURES Location/Qualifiers source 1..5040 /organism="Betapolyomavirus tertihominis" /mol_type="genomic DNA" /isolate="NMKI001" /isolation_source="nasopharyngeal swab" /host="Homo sapiens" /db_xref="taxon:1891764" /geo_loc_name="USA" /collection_date="23-Mar-2015" CDS 441..1643 /codon_start=1 /product="VP2" /protein_id="ANY58911.1" /translation="MGIFLAVPEIIAASIAGGAEALSIAGSGAAIATGEGLAALGGIT EGAALLGETIPISEAATTVLTKVPELVQATQAVTAAVQGGAGLVGGIYTALASDHPGD LPPNTPTGSASGLHPTSGYNPQGAGLNLQSVHKPIHAPYSGMALVPIPEYQLETGIPG IPDWLFNLVASYLPELPSLQDVFNRIAFGIWSSYYNAGSTVVNRVLSDEIQRLLRDLE YGFRATLASIGESDPVNAIATQVRSLATTARERELLQITAGQPLDLSRPTSALSAAAG ALTEAAYNFIYDASSLPKDGFNALSEGVHRLGQWISFSGPTGGTPHYATPDWILYVLE QLNADTYKIPTQAVKRKQDELHPVSPTKKANKAKKSSSPGTNSGNRSKKRRGRSTSRS TTVRRNRI" CDS 870..1643 /codon_start=1 /product="VP3" /protein_id="ANY58912.1" /translation="MALVPIPEYQLETGIPGIPDWLFNLVASYLPELPSLQDVFNRIA FGIWSSYYNAGSTVVNRVLSDEIQRLLRDLEYGFRATLASIGESDPVNAIATQVRSLA TTARERELLQITAGQPLDLSRPTSALSAAAGALTEAAYNFIYDASSLPKDGFNALSEG VHRLGQWISFSGPTGGTPHYATPDWILYVLEQLNADTYKIPTQAVKRKQDELHPVSPT KKANKAKKSSSPGTNSGNRSKKRRGRSTSRSTTVRRNRI" CDS 1498..2634 /codon_start=1 /product="VP1" /protein_id="ANY58913.1" /translation="MSCTPCRPQKRLTRPRSQVPRVQTLATEVKKGGVEVLAAVPLSE ETEFKVELFVKPVIGNTTAAQDGREPTPHYWSISSAIHDKESGSSIKVEETPDADTTV CYSLAEIAPPDIPNQVSECDMKVWELYRMETELLVVPLVNALGNTNGVVHGLAGTQLY FWAVGGQPLDVVGVTPTDKYKGPTTYTINPPGDPRTLHVYNSNTPKAKVTSERYSVES WAPDPSRNDNCRYFGRVVGGAATPPVVSYGNNSTIPLLDENGIGILCLQGRLYITCAD MLGTANSRIHTPMARFFRLHFRQRRVKNPFTMNVLYKQVFNRPTETVDAQVGVTEVTM VEEIGPLPPSIQTTLPTSVNLTQLPRTVTLQSQAPLLNTQQNSK" CDS complement(join(2655..4328,4716..4967)) /codon_start=1 /product="large T antigen" /protein_id="ANY58914.1" /translation="MDKTLSREEAKQLMQLLCLDMSCWGNLPLMRRQYLVKCKEYHPD KGGNEESMKLLNSLYLKLQDSVSSVHDLNEEEDNIWQSSQIPTYGTPDWDEWWSQFNT YWEEELRCNESMPSSPKRSAPEEEPSCSQATPPKKKHAFDASLEFPKELLEFVSHAVF SNKCITCFVVHTTREKGEVLYKKLLQKYQCSFISKHAFYNTVLIFFLTPHKHRVSAIN NFCKGHCTVSFLFCKGVNNPYGLYSRMCRQPFNLCEENIPGGLKENEFNPEDLFGEPK EPSLSWNQIANFALEFDIDDVYYLLGSYIRFATKPEECEKCSKNDDATHKRVHVQNHE NAVLLQESKSQKNACTQAIDRVIAERRYNCVTLTRKKLLTKRFKKLFNEMDKIVVGER KILLYMASIAWYTGLNKKIDELVVRFLKLIVDNKPKHRYWLFKGPINSGKTTLATALL NLCGGKALNINIPSEKLPFELGVALDQYMVVFEDVKGQIGIEKQLPSGNGVNNLDNLR DYLDGCVEVNLEKKHVNKRSQIFPPGIVTMNEYCIPETVAVRFEKTVMFTIKRNLRES LEKTPQLLSQRILHSGIAMLLLLIWYRPVSDFDEEIQSNVVYWKEVLDNYIGLTEFAT MQMNVTNGKNILEKWFE" CDS complement(4392..4967) /codon_start=1 /product="small T antigen" /protein_id="ANY58915.1" /translation="MDKTLSREEAKQLMQLLCLDMSCWGNLPLMRRQYLVKCKEYHPD KGGNEESMKLLNSLYLKLQDSVSSVHDLNEEEDNIWQSSQVYCKDLCCNKFRLVGAIY GEYYEAYIMKQWDVCIHGYNHECQCIHCILSKYHKEKYKIYRKPPVWIECYCYKCYRE WFFFPISMQTFFFWKVIIFNTEIRAVQPLLR" BASE COUNT 1507 a 1049 c 937 g 1547 t ORIGIN 1 cctctggcct cctgtaatat agaaaaaaag ggcacagtga ttgacagttg tgtatacaag 61 catgtgtggt atgttaagtg tgtaagccaa taaagttaaa ggtcaccacg gtgggtggtg 121 acacctgata ccggcggaac tagttgctac gtgccacaca atagctttca ctcttggcgt 181 gaagccaact tcctgggccg tgagccagct tcctgcggcc ttgtgttttt taacaacaca 241 cctggtgaac ttctactgtc cttgacacag gtaagactgg ggaccctttg taggccaaag 301 gagagtgaag ggtaactgaa atgctaagac tgtaagttct aatcctagta tttcagttcg 361 gggatgttgg cgccatcgtc tcgaacctgg cctgcatacc tttggatata gagggtcacc 421 aatttttatt ttgtttttag atgggaatat ttcttgctgt acctgaaatt atagcagcat 481 ctatagctgg aggagcagag gccttgtcaa ttgctggttc tggagctgcc atagctactg 541 gtgaaggctt agctgccctt ggtggtataa cagagggagc tgcacttctt ggggaaacaa 601 taccaatatc tgaagcagct actactgtgt taactaaagt tcctgaactt gttcaagcta 661 cccaagctgt aacagcagct gtgcaaggag gtgcaggcct tgtaggtggc atttatactg 721 ccttagcatc agaccaccct ggggacctgc ctccgaacac cccaacagga agtgcaagtg 781 gactccatcc cacctcagga tacaatcccc agggagcagg actcaatctc cagtcagtgc 841 acaaaccaat tcacgccccc tactcaggaa tggcattggt acctatccct gaataccagt 901 tggaaactgg aattccgggc atcccagact ggctcttcaa ccttgtcgcg tcatacttgc 961 ccgagttgcc tagtttgcag gacgtgttca atagaattgc ctttggaatc tggtcatcat 1021 attacaatgc ggggtcaaca gtagttaaca gagttcttag tgatgaaatt caaagacttt 1081 taagagacct tgaatatgga tttagagcaa ctttagccag cataggagaa tcagatcctg 1141 taaatgctat agctactcaa gttagaagct tagctaccac agcaagggaa agggagctgc 1201 tacaaattac tgcaggtcag ccacttgacc tttctaggcc tactagcgcc ttgtcagcag 1261 cagctggagc attaactgaa gcagcttata attttatata tgatgcttca agcctgccca 1321 aagatggctt taatgcttta agtgagggtg tacacagact aggtcagtgg atttcctttt 1381 cagggcctac aggaggtacc ccacattatg caactcctga ctggattttg tatgtgctag 1441 aacaactaaa tgctgatacc tataaaattc ctacacaggc agtaaaaaga aaacaagatg 1501 agctgcaccc cgtgtcgccc acaaaaaagg ctaacaaggc caagaagtca agttccccgg 1561 gtacaaactc tggcaacaga agtaaaaaaa ggaggggtag aagtactagc cgcagtacca 1621 ctgtcagaag aaacagaatt taaagtggaa ctatttgtaa agccagtaat tggaaataca 1681 acagctgctc aggatgggcg tgagcccacc cctcattact ggtcaattag ctctgccatt 1741 catgacaagg aaagcggttc aagtatcaaa gttgaagaaa ctccagatgc tgacacaact 1801 gtatgttaca gcctggcaga aattgctccc cctgatatac caaatcaagt tagtgagtgt 1861 gacatgaaag tatgggagct gtacagaatg gaaacagagt tgcttgttgt acctctagtt 1921 aatgctctag gaaacaccaa tggtgttgta catggtctgg ctggaaccca gttgtatttt 1981 tgggctgttg ggggacagcc acttgatgta gttggtgtaa cacccacaga caagtataaa 2041 ggcccaacta cctatacaat taatccacca ggagacccta gaacactgca tgtgtacaat 2101 agtaatacac ccaaagcaaa ggttaccagt gagagatatt ctgttgaatc atgggcccca 2161 gaccccagta gaaatgacaa ttgtagatat tttggaagag tggtaggtgg tgctgcaaca 2221 cctccagttg tatcatatgg taacaactct actattccac tattggatga aaatggcatt 2281 ggtatacttt gcttgcaggg aagattgtac attacttgtg cagatatgct tggaacagct 2341 aatagtagaa tccatacccc tatggctagg ttttttaggc tacattttag acaaagaagg 2401 gttaagaatc cttttacaat gaatgtgctg tataaacaag tgtttaacag acccacagaa 2461 actgttgatg cacaggttgg tgtaacagag gtgactatgg tagaagaaat aggcccactt 2521 ccccccagta tacaaactac cctccccacc agtgtaaatc ttactcagct tccacgcact 2581 gtaacacttc agtcccaggc tcctttgtta aatactcaac aaaattcaaa gtgaatgtat 2641 tataataaag ctgtttattc aaaccacttt tctagtatgt tttttccatt ggttacattc 2701 atttgcatag tggcaaactc agtaaggcct atataattat caagaacttc tttccaatac 2761 acaacattac tttgaatttc ttcatcaaag tcacttacag gtctatacca tattagcaat 2821 aacaacatag ctattccact gtgtaatatt ctttgtgata gtaactgtgg tgttttttct 2881 aggctttctc ttaaatttct tttaatagtg aacataacag ttttttcaaa tctcacagca 2941 actgtttctg gaatacaata ttcattcatg gttacaatcc ctgggggaaa tatttgtgac 3001 ctcttattaa catgtttttt ttctaagtta acctcaacac aaccatcaag gtagtctctt 3061 aagttatcaa gattatttac cccattacca gaaggtagtt gcttttcaat acctatttga 3121 cctttgacat cttcaaacac aaccatatat tgatcaagag caactccaag ttcaaatggt 3181 agtttttctg aaggtatgtt aatgttcaag gctttgccac cacacaaatt taacaaagca 3241 gtggctaatg tggttttgcc actgttaatt gggcctttga aaagccaata tctgtgtttt 3301 ggcttgttgt ctacaattag ctttaaaaat ctaacaacta attcatctat ttttttattt 3361 agtccagtat accaggctat tgaagccata taaagcagta tttttctttc tccaacaaca 3421 attttatcca tttcattaaa aagcttttta aaccttttag ttagtagctt tttcctagtt 3481 aaggttacac agttatatct tctttctgct ataactctat caatggcttg tgtgcaagca 3541 tttttttggc ttttactttc ttgcaaaagc acagcatttt catgattttg cacatgtacc 3601 cttttatggg tagcatcatc atttttactg catttttcac actcttcagg cttagtagca 3661 aaccttatat atgaccccag taagtaatac acatcatcta tgtcaaattc cagagcaaag 3721 ttagctattt gattccagct taatgagggt tccttaggtt ccccaaataa atcttctgga 3781 ttaaattcat tttcttttaa ccctccagga atattttctt cacacaaatt aaatggttgt 3841 ctacacatcc tactatacag accataaggg ttattaactc ctttacagaa taaaaagcta 3901 acagtacaat gacctttgca gaagttatta atagcactaa ctctatgctt gtgaggagtt 3961 aagaaaaata ttaaaacagt attataaaat gcatgcttac ttataaagct acattgatac 4021 ttttgaagta actttttata aagtacttcc cctttttctc tagtagtatg tactacaaag 4081 cacgttatac acttattact aaatacagca tgtgaaacaa actctaacaa ctctttagga 4141 aattctaaag aagcatcaaa tgcatgtttt ttcttaggag gggttgcctg agaacagcta 4201 ggctcctctt ctggtgcact tctttttgga gaagatggca tggattcatt acatcttaac 4261 tcttcttccc agtaggtgtt gaactgtgac caccactcat cccagtcagg tgtaccgtat 4321 gtaggtatct atacaacaaa aatatacatt taatattaca caaacaatta tttaaaaaca 4381 ttattttatg cttaccgtaa taatggttga actgctcgta tttcagtatt aaaaataatc 4441 actttccaaa agaaaaatgt ttgcattgaa attggaaaaa aaaaccactc cctgtagcac 4501 ttatagcagt agcactctat ccacacaggt ggttttctat aaattttgta cttttcttta 4561 tgatatttgc ttaaaataca gtgaatgcat tggcattcgt gattgtagcc atgaatgcat 4621 acatcccact gcttcataat atatgcttca tagtattcac catatatagc accaactaat 4681 ctaaacttat tgcagcacaa atctttgcag tatacctgag aagattgcca tatattatct 4741 tcttcttcat ttaaatcatg tacactgcta actgagtctt gcagttttaa atataaagaa 4801 ttaagaagct tcatgctttc ctcatttcct cctttatctg gatgatattc tttgcacttt 4861 actaagtatt gtcttctcat tagtggtaaa ttgccccagc aactcatgtc caaacataaa 4921 agttgcatta gctgctttgc ctcttctcta gataaagttt tatccatttt gcctctctag 4981 gcctctcaaa agcctctgca ggccctctcc ttcttctaga aaaagctggg gcttttttgg //