LOCUS KU593578 4659 bp DNA linear HUM 25-MAY-2016 DEFINITION Homo sapiens MHC class II antigen (HLA-DRB5) gene, HLA-DRB5*02_02e1_STR1_IH31_E6_AL1 allele, partial cds. ACCESSION KU593578 VERSION KU593578.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4659) AUTHORS Barsakis,K., Babrzadeh,F., Chi,A., Mindrinos,M.N. and Fernandez-Vina,M.A. TITLE HLA variation in coding and non-coding gene segments JOURNAL Unpublished REFERENCE 2 (bases 1 to 4659) AUTHORS Barsakis,K., Babrzadeh,F., Chi,A., Mindrinos,M.N. and Fernandez-Vina,M.A. TITLE Direct Submission JOURNAL Submitted (25-JAN-2016) Stanford Blood Center, Stanford School of Medicine, 3165 Porter Drive, Palo Alto, CA 94304, USA COMMENT ##Assembly-Data-START## Assembly Method :: Program in house v. k1.1 Sequencing Technology :: Illumina; Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..4659 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" gene <243..>4359 /gene="HLA-DRB5" /allele="HLA-DRB5*02_02e1_STR1_IH31_E6_AL1" mRNA join(<243..512,2762..3043,3747..3857,4336..>4359) /gene="HLA-DRB5" /allele="HLA-DRB5*02_02e1_STR1_IH31_E6_AL1" /product="MHC class II antigen" CDS join(<243..512,2762..3043,3747..3857,4336..>4359) /gene="HLA-DRB5" /allele="HLA-DRB5*02_02e1_STR1_IH31_E6_AL1" /codon_start=3 /product="MHC class II antigen" /protein_id="ANG08866.1" /translation="CFLQQDKYECHFFNGTERVRFLHRGIYNQEENVRFDSDVGEYRA VTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGAVESFTVQRRVEPKVTVYPARTQ TLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQILVMLETVP RSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGIGGFVLGLLFLGAGLFIYFKN QKGHSGLHPT" BASE COUNT 1166 a 957 c 1127 g 1409 t ORIGIN 1 cggggagggg gtcccaaaag ccttgggatc agaaggggtt ttcccgcctg gtcccccaga 61 cagcccgttc gcctcaggaa gacggaggat gagcctctgg gctgcgcgtg gtcggggtta 121 tggttgggat cagttaaggt tccagtgccc gcaccccgcc cagggagccc cggatggcgg 181 cgtctctgtc agtgtcttcc ccggaggccg cccctgtgac cggatccttc gtgtccccac 241 agcatgtttc ttgcagcagg ataagtatga gtgtcatttc ttcaacggga cggagcgggt 301 gcggttcctg cacagaggca tctataacca agaggagaac gtgcgcttcg acagcgacgt 361 gggggagtac cgggcggtga cggagctggg gcggcctgac gctgagtact ggaacagcca 421 gaaggacatc ctggagcagg cgcgggccgc ggtggacacc tactgcagac acaactacgg 481 ggctgtggag agcttcacag tgcagcggcg aggtgagcat ggtggggggc ggggcctggg 541 tccttgtgag ctgggaatct gagtgtgtgt gtgtgtgtgt gtgtgtgtga gagagagaga 601 gagagagaga ggaagagaga gacagagagg gagcgcgcca tctgtgagca tttagaatcc 661 tctcaatctt gagcaaggac ttctgaggac acaggtgtgt gtgtagagtg tggatttgtc 721 tttgtggcct ttgtgggagg ggaagcagga gggggcttct tcttatcctt ggaggcctct 781 gtggggaggt gacatgggag gtgggtgcag ggggctggag agagaggaga ccttggttgt 841 ctcgtgtcct tagagatgca gggaaggaaa gtgtaaggtg tgtgtggttg gggtgaaggt 901 ttaggggagg agagctgagg ggtgtggaag atttgtgata atatgaggag gccagttcca 961 gactgtccct ggcacccacc cttcacgcag tctctgaaat aaaagggtgt ggtgtttgtt 1021 tgcaaaagca ttagattaat ttctagggga attgaagaga cctctgaggc acctctgaag 1081 cttctttagg tctaaatttc ttgctatttt ttctgtttgt tttcttagtg tgtatatttt 1141 tacatagttg aaatgactgt gaaactaact ttttgattaa aattttaata cactgttact 1201 attttattat aatgctaata gttttctact acttacctat tattctttta tatataatag 1261 ttgtgacaca acttatctca ctttcccctt tgttgacctt tattatgaca ttcaccaaaa 1321 gttgaaaata tatgtttctg gttaatattt aatttatttt tttatttgga attcttttga 1381 attatcttga cctatttatt gcccaattat aattactgct ctaagaattc cctattgtat 1441 ttggtaggta atggacaatg atctattttc tgttatctcc agggcttagt atttttctca 1501 gtgattttgt gggttctttg tactgtaaga ttattaacac tttattgata tttgattcca 1561 cattttctcc agtttttgat ttgtatgttg attttgaaaa ttctatgtta agaatttgaa 1621 catttctgtt taataaaata tattccaaaa cttttattaa tggtttacaa accatcttaa 1681 atctatcatt ttgtggtatt tttgtctcca ggtttctcct tccttcttaa aaaaaatgta 1741 tttattgaga gtctgctagt gttagggatt ttcctaggca taagcacccc aagtaatgag 1801 tcccagaccc tgcctgcctt gatccaaatg tcattctgga aagaaaaatt attttacaat 1861 gatagtataa taatagttat gcttgtttgc atgggagatg cattgatcag ctaaatgtaa 1921 atgtaagaat tttcaaaact aaaataactt tccttaatcc ttctctctgc tttatgactc 1981 atgctttcct gggaacttaa agattggaga accatttctg tctgtcctac cttcccaggg 2041 gcacaaccat ttctgtggtg ttctaaggtg tgagtgcatg gcagtagtat tcctaaacat 2101 tcatactcag tctccttttg taccctactc ggtcccttta tctatccaca ttactttaaa 2161 tcatattttt ctctcaagct gtacaaggat gataaatagg tggcaagtgg aacacccaag 2221 tgtgatgagc cctctcacag tggaatggag tgagaagctt tatgacctca taaattaaag 2281 gctatcttca gtcattgttt tatatatttt acgtgcatta atcctcatat aaccccaaga 2341 ggtaaattac tataattatc ctctattatg ggtgagaaag ttgagacaca gaagaattga 2401 aaaactcttc cagcatcaac cagtaaaagg cagaccttgg atttgagcca ggcaacctgg 2461 ctcaggtatc agttttaatt actacactct gtactttcaa agacttgtaa acactttgac 2521 aatgcatccc aatttcaagt gatgaagaaa caaacacaat ttttcacatc tctcaaatct 2581 gatgagcccc cactataaag actaaattcc aggctgatga cactgtgagg cctcatggcc 2641 agctgtgctg gaggcctggt caaggccaga gcctgggttt acagagaagc agacaaacag 2701 ccaaaaaggg agattcactc tgtcttcctg agtcattccc tctacatttc ctttctccta 2761 gttgagccta aggtgactgt gtatcctgca aggacccaga ccctgcagca ccacaacctc 2821 ctggtctgct ctgtgaatgg tttctatcca ggcagcattg aagtcaggtg gttccggaac 2881 ggccaggaag agaaggctgg ggtggtgtcc acaggcctga ttcagaatgg agactggacc 2941 ttccagattc tggtgatgct ggaaacagtt cctcggagtg gagaggttta cacctgccaa 3001 gtggagcacc caagcgtgac gagccctctc acagtggaat ggagtgagca gctttctgac 3061 ttcataaatt tctcaaccac caagaagcaa actttactaa tccctgagtg tcaggtttct 3121 catctcccac atcctatttt catttgctcc atgttctcat ctccgttagc acaggtcact 3181 gggggtagcc ctgtatagtt tctagaaaca cctgtatcct ctggggaagc agtcattcct 3241 ggcaggaagg agaggctgtc cctgttttga acctccccat gatgtcacag gtcagggtca 3301 ccccctctcc cagggctcca gaccctgcct ctgggtctga gactgtgttt ctggtgctgt 3361 tgatctgagt tatttgttgt gatctgggaa gaggagaagt gtaggggcct tcctgacatg 3421 aggggagtcc aatctcagct ctgcctttta ttagttctgt cactctagac aaactattta 3481 acctcattga gtctcaggct ttctgtttat cagatgttga agccgtgcct tacatcaggg 3541 ctgtaatatt agaatgaatt tgatccctga aacttgtaac tgttcagtgt gatttgaaaa 3601 cctttttttt ctccagaaat ggctagttat tttagttctt acagagcagc cttcttcccc 3661 attttcaaag ctatgaatat tgcagggtct caattaaaaa ggttcaattt gggataaaaa 3721 tcactaaacc tggcttcctc tcccaggagc acagtctgaa tctgcacaga gcaagatgct 3781 gagtggaatc gggggctttg tgctgggcct gctcttcctt ggggccgggc tattcatcta 3841 cttcaagaat cagaaaggtg aggagccttt ggtagcggct ctctccatag acttttccag 3901 aggaggaaat agggctttgc tgaggttagt tctcagtata tgagtggccc tggataaagc 3961 ctttctttcc acaaatgacc tccaatgccc tgctaatcca gaaatcatta atgcatggtt 4021 actatgtcaa aagcataata gcttgtggcc tgcagagata agagaaaggt taactagtta 4081 agggtccttt ggtttgaaat cctggagcaa attaaggaag agccactaag gctaatgcaa 4141 ttacactgga tcctgtgaca gacatgtcat gcttcatggg tcacatggtc tgtttctgct 4201 cctctctgcc ctggttggtg tgggttgtgg tgttagagaa atctcaggtg ggagatctgg 4261 gactaggaca ttgtgttggg agaatagatt tgcttccata ccttttaagt gtatatcttt 4321 tcctcttttt cccagggcac tctggacttc acccaacagg taataccttt taatcctctt 4381 ttagaaacag attcagtttt cctagaatga tggcagaggt gataaggcat gagacagaaa 4441 tagcaggaaa gactttggat ccaaattcct gatcaggcaa tttataccaa aactcctcct 4501 ctccacttag gcctgtgctc tgcaggagta ttggttcagg gagacttagg aacttgtttt 4561 tcttcttcct gcagtgctct catctgagtc cttgaaagag aggaaaagaa gctgttagtg 4621 gaaccaggtc tgaaaacaac actttcctct ctctctgca //