LOCUS KU528610 2915 bp DNA linear HUM 31-MAR-2016 DEFINITION Homo sapiens MHC class I antigen (HLA-C) gene, HLA-C*17:NEW allele, complete cds. ACCESSION KU528610 VERSION KU528610.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2915) AUTHORS Bravo-Egana,V., Clark,P. and Monos,D. TITLE Generation of high confidence HLA genotyping and consensus sequences for Class I HLA loci using the NGS-based Omixon Holotype HLA typing system and the Illumina MiSeq platform JOURNAL Unpublished REFERENCE 2 (bases 1 to 2915) AUTHORS Bravo-Egana,V., Clark,P. and Monos,D. TITLE Direct Submission JOURNAL Submitted (16-DEC-2015) Immunogenetics Laboratory, Children's Hospital of Philadelphia, 3516 Civic Center Blvd. Abramson Bldg. Room 712, Philadelphia, PA 19104, USA COMMENT ##Assembly-Data-START## Assembly Method :: Omixon Twin v. 1.1.1 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2915 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" gene <1..>2915 /gene="HLA-C" /allele="HLA-C*17:NEW" mRNA join(<1..73,204..473,720..995,1583..1858,1983..2120, 2559..2591,2699..2746,2911..>2915) /gene="HLA-C" /allele="HLA-C*17:NEW" /product="MHC class I antigen" CDS join(1..73,204..473,720..995,1583..1858,1983..2120, 2559..2591,2699..2746,2911..2915) /gene="HLA-C" /allele="HLA-C*17:NEW" /codon_start=1 /product="MHC class I antigen" /protein_id="ALZ40825.1" /translation="MRVMAPQALLLLLSGALALIETWAGSHSMRYFYTAVSRPGRGEP RFIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVNL RKLRGYYNQSEAGSHTIQRMYGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAA DTAAQISQRKLEAAREAEQLRAYLEGECVEWLRGYLENGKETLQRAERPKTHVTHHPV SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSG QEQRYTCHVQHEGLQEPCTLRWKPSSQPTIPNLGIVSGPAVLAVLAVLAVLAVLGAVV AAVIHRRKSSGGKGGSCSQAASSNSAQGSDESLIACKA" BASE COUNT 542 a 845 c 932 g 596 t ORIGIN 1 atgcgggtca tggcgcccca agccctcctc ctgctgctct cgggagccct ggccctgatc 61 gagacctggg ccggtgagtg cggggttggg agggaaacgg cctctgcgga gaggagcgag 121 gggcccgccc ggcgagggcg caggacccgg ggagccgcgc agggaggagg gtcgggcggg 181 tctcagcccc tcctcgcccc caggctccca ctccatgagg tatttctaca ccgccgtgtc 241 ccggcccggc cgcggagagc cccgcttcat cgcagtgggc tacgtggacg acacgcagtt 301 cgtgcggttc gacagcgacg ccgcgagtcc gagaggggag ccgcgggcgc cgtgggtgga 361 gcaggagggg ccggagtatt gggaccggga gacacagaag tacaagcgcc aggcacaggc 421 tgaccgagtg aacctgcgga aactgcgcgg ctactacaac cagagcgagg ccggtgagtg 481 accccagccc ggggcgcagg tcacgacccc tccccatccc ccacggacgg cccgggtcgc 541 cccgagtctc ccggtctgag atcctccccg aggctgcgga acccgcccag accctcgacc 601 ggagagagcc ctagtcgcct ttacccggtt tcattttcag tttaggccaa aatccccgcg 661 ggttggtcgg ggctggggcg gggctcgggg gacggggctg accacggggg cggggccagg 721 ttctcacacc atccagagga tgtatggctg cgacctgggg cccgacgggc gcctcctccg 781 cgggtataac cagttcgcct acgacggcaa ggattacatc gccctgaacg aggacctgcg 841 ctcctggacc gcggcggaca cggcggctca gatctcccag cgcaagttgg aggcggcccg 901 tgaggcggag cagctgagag cctacctgga gggcgagtgc gtggagtggc tccgcggata 961 cctggagaac gggaaggaga cgctgcagcg cgcgggtacc aggggcagtg gggagccttc 1021 cccatctcct atagatctcc cgggatggcc tcccacgagg aggggaggaa aatgggatca 1081 gcgctagaat atcgccctcc cttgaatgga gaatgggatg agttttcccg agtttcctct 1141 gagggccccg tctgctctct aggacaatta agggatgaag tccctgagga aatggagggg 1201 aagacagtcc ctggaatact gatcaggggt cccctttgac cactttgacc actgcggcag 1261 ctgtggtcag gctgctgacc tttctctcag gccttgttct ctgcctcaca ctcaatgtgt 1321 ctgaaggttt gattccagct tttctgagtc cttcggcctc cactcaggtc aggaccagaa 1381 gtcgctgttc ctccctcaga gactagaact ttccaaagaa taggagatta tcccaggtcc 1441 ctgtgtccag gctggcgtct gggttctgtg cccccttccc taccccaggt gtcctgtcca 1501 ttctcaggat ggtcacatgg gcgctgctgg agtgtcgcaa gagagataca aagtgtctga 1561 attttctgac tcttcccgtc agaacgccca aagacacacg tgacccacca tcccgtctct 1621 gaccatgagg ccaccctgag gtgctgggcc ctgggcttct accctgcgga gatcacactg 1681 acctggcagc gggatgggga ggaccaaact caggacaccg agcttgtgga gaccaggcca 1741 gcaggagatg gaaccttcca gaagtgggca gctgtggtgg tgccttctgg acaagaacag 1801 agatacacgt gccatgtgca gcacgagggg ctgcaggagc cctgcaccct gagatggagt 1861 aaggaggggg atgaggggtc atgtgtcttc tcagggaaag cagaagtcct tctggagccc 1921 ttcagccggg tcagggctga ggcttgggtg taagggcccc tcaccttccc ctcctttccc 1981 agagccgtct tcccagccca ccatccccaa cttgggcatc gtttctggcc cagctgtcct 2041 ggctgtcctg gctgtcctgg ctgtcctagc tgtcctagga gctgtggtcg ctgctgtgat 2101 acataggagg aagagctcag gtagggaagg ggtgaggagt ggggtctggg ttttcttgtc 2161 ccactgggag tttcaagccc caggtagaag tgtgccccac ctcgttactg gaagcaccat 2221 ccacacctgg gccatcccag cctgggaccc tgtgtgccag cacttactct gttgtgaagc 2281 acatgacaac gaaggacaga tgtatcacct tgatgattat ggtgttgggg tcctgattcc 2341 agcattcgtg agtcagggga aggtccctgc taaggacaga ccttaggagg gcagttgctc 2401 cagaacccac agctgctttc cccgtgtttc ctgatcctgc cctgggtctg cagtcatagt 2461 tctggaaact tctcttgggt ccaagactag gaggttcccc taagatcgca tggccctgcc 2521 tcctccctgt cccctcacag ggcattttct tcccacaggt ggaaaaggag ggagctgctc 2581 tcaggctgcg tgtaagtgat ggcggtgggc gtgtggagga gctcacctac cccataattc 2641 ctcttgtccc acatctcctg cgggctctga ccaggtcttt ttttttgttc taccccagcc 2701 agcaacagtg cccagggctc tgatgagtct ctcatcgctt gtaaaggtga gattctgggg 2761 agctgaagtg gtcgggggtg gggcagaggg aaaaggcctg ggtaatgggg atcctttgat 2821 tgggacgttt cgagtgtgtg gtggactgtt cagagtgtca tcacttacca tgactgacct 2881 gaatttgttc atgactattg ttttctgtag cctga //