LOCUS KR051449 2559 bp RNA linear VRL 10-JUN-2015 DEFINITION HIV-1 isolate BS46_E1_21032012 from Cameroon envelope glycoprotein (env) gene, complete cds; and vpu protein (vpu), rev protein (rev), and tat protein (tat) genes, partial cds. ACCESSION KR051449 VERSION KR051449.1 KEYWORDS . SOURCE Human immunodeficiency virus 1 (HIV-1) ORGANISM Human immunodeficiency virus 1 Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus; Lentivirus humimdef1. REFERENCE 1 (bases 1 to 2559) AUTHORS Tongo,M., Essomba,R.G., Nindo,F., Abrahams,F., Nanfack,A.J., Fokam,J., Takou,D., Torimiro,J., Mpoudi-Ngole,E., Burgers,W., Martin,D. and Dorfman,J.R. TITLE Phylogenetics of HIV-1 subtype G env: greater complexity and older origins than previously reported JOURNAL Unpublished REFERENCE 2 (bases 1 to 2559) AUTHORS Tongo,M., Essomba,R., Nindo,F., Abrahams,F., Nanfack,A., Fokam,J., Takou,D., Torimiro,J., Mpoudi-Ngole,E., Burgers,W., Martin,D. and Dorfman,J. TITLE Direct Submission JOURNAL Submitted (31-MAR-2015) Cellular Immunology, International Centre for Genetic Engineering and Biotechnology, Wernher & Beit Bldg South S2.19 Anzio Road, Cape Town 7925, South Africa COMMENT Annotation information was provided by the author. Some of the information does not have GenBank feature identifiers and is being provided in the comment section. Information in this section is searchable in HIV Database at Los Alamos (hiv.lanl.gov). ##HIVDataBaseData-START## Patient Age :: 46 years Patient Sex :: F Patient Cohort :: Blood Bank Sample Tissue :: Plasma CD4 Count :: 230 cells/ul Viral Load :: 79555 copies/ml ##HIVDataBaseData-END## FEATURES Location/Qualifiers source 1..2559 /organism="Human immunodeficiency virus 1" /mol_type="genomic RNA" /isolate="BS46_E1_21032012" /host="Homo sapiens" /db_xref="taxon:11676" /geo_loc_name="Cameroon" /collection_date="2007" /note="subtype: G" gene 1..2559 /gene="env" CDS 1..2559 /gene="env" /codon_start=1 /product="envelope glycoprotein" /protein_id="AKK23464.1" /translation="MKVKGIQRNWQHLWTWWTLILGLVIICSTSNNLWVTVYYGVPVW EDANAPLFCASDAKAYETEKHNVWATHACVPTDPDPQEIILENVTENFNMWENNMVEQ MHEDIISLWDESLKPCVKLTPLCVTLECNDYNGTATNNSIATKNYTGIEKEAQNLKNC SFNITTEIRDKKKKEYAIFYKLDVVQIDNTSNYRLINCNVSTIKQACPKVSFDPIPIH YCAPAGFAILKCREKNFNGTGQCRNVSSVQCTHGIKPVVSTQLLLNGSLAEDEIVIRS KNISDNTKIIIVQLNETIEINCTRPNNNTRKDIRIGPGQAFYATGAIIGDIRQAYCNV SGKDWTDMMRKVKAQLGKVIKKNITFNSSTGGDLEITTHSFNCRGEFFYCNTSRLFNI SDTSNTSDTNITLLCRIRQIVRMWQKVGQAMYAPPIEGEITCRSNITGLLLTRDGGTN NNESETFRPGGGDMRDNWRSELYRYKIVKIKPLGVAPTKARRIVVTREKRAVGLGAVL FGFLGAAGSTMGAASITLTVQVRQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQ ARVLAVERYLRDQQLLGIWGCSGKLICTTNVPWNTSWSNKSYEEIWDNMTWIQWEREV SNYTQQIYSLIEESQNQQEKNEQDLLALDKWASLWTWFDISNWLWYIRIFIMIVGGLI GLRIVFAVISIVNRVREGYSPLSFQTLTHHRREPDRPEETEEGGGEQDRDKSIRLVNG FLALAWDDVRSLYLFCYHRLRDFILIAARTVQLLGRSSLQGLRLGWEGLKHLWNLLLY WGRELRNSAINLVDTLAIAVANWTDRVIEVAQRACRAICNIPRRIRQGAEKVLQ" gene <1..83 /gene="vpu" CDS <1..83 /gene="vpu" /codon_start=3 /product="vpu protein" /protein_id="AKK23463.1" /translation="ESEGDTEELATLVDMVDFDPWVGDNL" gene <2122..2417 /gene="rev" CDS <2122..2417 /gene="rev" /codon_start=3 /product="rev protein" /protein_id="AKK23462.1" /translation="PYPPPEGTRQARRNRRRRWRARQRQIHSISERILSTCLGRRAEP VPFLLPPLERLHIDCSEDSTTSGTQQPPGTETGVGGPQTSVESPVVLGSGTKE" gene <2122..2212 /gene="tat" CDS <2122..2212 /gene="tat" /codon_start=2 /product="tat protein" /protein_id="AKK23461.1" /translation="PLPTTGGNPTGQKKPKKEVESKTETNPFD" BASE COUNT 908 a 438 c 592 g 621 t ORIGIN 1 atgaaagtga aggggataca gaggaattgg caacacttgt ggacatggtg gactttgatc 61 cttgggttgg tgataatttg tagtacctca aacaacttgt gggtcacagt ctattatggg 121 gtaccagtgt gggaagacgc aaatgcccct ctattttgtg catctgatgc taaggcatat 181 gagactgaaa aacataatgt ctgggccaca catgcctgtg taccaacaga tcctgatcca 241 caagagataa ttttggaaaa tgtaacagaa aattttaaca tgtgggaaaa taacatggta 301 gaacaaatgc atgaggatat aatcagtcta tgggatgaaa gcctgaagcc atgtgtaaag 361 ctaacccctc tctgtgttac cttagaatgt aatgactata acggtactgc cactaacaac 421 agtattgcta ctaaaaacta tacaggtata gaaaaagaag cacaaaactt aaaaaactgc 481 tctttcaata taaccacaga aataagagat aaaaagaaga aagaatacgc gatcttctat 541 aaacttgatg tggtacaaat tgataatact agcaattata ggctgataaa ttgtaatgtc 601 tcaaccatta aacaggcttg tccaaaagtg tcttttgacc caattcccat acattattgt 661 gctccagctg ggtttgcgat tttaaaatgc agggaaaaga atttcaatgg aacaggacaa 721 tgtcgcaatg tcagttcagt acagtgtaca catggaatta agccagtggt atcaactcag 781 ttattgctga atggcagttt agcagaagat gaaatagtaa ttagatctaa aaacatctca 841 gacaatacca aaatcataat agtgcaactt aatgagacta tagaaattaa ttgtaccagg 901 cccaataaca atacaaggaa agatataaga ataggacctg gacaagcatt ttatgcaaca 961 ggggcaataa taggagatat aagacaagca tattgtaatg taagtggaaa agattggact 1021 gatatgatgc ggaaggtaaa agcacaacta ggaaaagtca ttaagaaaaa tataaccttt 1081 aactcatcca caggaggaga cctagaaatt acaacacata gttttaattg tagaggagaa 1141 tttttctatt gtaatacatc acgattattt aacatatcag atacatcaaa tacatcagac 1201 actaacatca cactcctatg taggataaga caaattgtga gaatgtggca gaaagtggga 1261 caagcaatgt atgcccctcc catcgaggga gaaattacat gtagatcaaa tattacagga 1321 ctactattaa caagagatgg tgggactaat aataatgaga gtgagacctt cagacctgga 1381 ggaggagata tgagggacaa ttggagaagt gaactatata ggtataaaat agtaaaaatt 1441 aaaccactag gagtagcacc caccaaggca aggagaatag tggtgacgag agaaaaaaga 1501 gcagttggac taggagctgt tctctttggg ttcctaggag cagccggaag cactatgggc 1561 gcggcgtcaa taacgctgac ggtacaggtc agacaattat tgtctggcat agtgcaacag 1621 caaaacaatt tgctgagggc tatagaggcg caacagcatc tgttgcaact cacagtctgg 1681 ggcattaaac agctccaggc cagagtcctg gctgtagaaa gatacctaag ggatcaacag 1741 ctcctaggaa tttggggctg ctctggaaaa ctcatctgca ccactaatgt gccctggaac 1801 actagttgga gtaataaatc ttatgaggag atttgggata acatgacctg gatacaatgg 1861 gaaagagaag tcagcaatta cacacaacaa atatacagcc taattgaaga atcacaaaac 1921 cagcaggaaa agaatgaaca agacttattg gcattagaca agtgggcaag cttgtggact 1981 tggtttgaca tatcaaattg gctatggtat ataagaatat ttataatgat agtagggggt 2041 ttaataggtc ttagaatagt ttttgctgtg atttctatag tgaatagagt tagggaggga 2101 tactcacctt tatcattcca gacccttacc caccaccgga gggaacccga caggccagaa 2161 gaaaccgaag aaggaggtgg agagcaagac agagacaaat ccattcgatt agtgaacgga 2221 ttcttagcac ttgcctggga cgacgtgcgg agcctgtacc ttttctgcta ccaccgcttg 2281 agagacttca tattgattgc agcgaggaca gtacaacttc tgggacgcag cagcctccag 2341 ggactgagac tggggtggga gggcctcaaa catctgtgga atctcctgtt gtattggggt 2401 cgggaactaa ggaatagtgc tattaattta gttgatacat tagcaatagc agtagctaac 2461 tggacagata gggttataga agtagcacaa agagcttgta gagctatttg taacatacct 2521 agaaggataa gacaaggcgc ggaaaaagtt ctgcaataa //