LOCUS       KQ412172              134962 bp    DNA     linear   CON 10-AUG-2015
DEFINITION  Termitomyces sp. J132 unplaced genomic scaffold scaffold40, whole
            genome shotgun sequence.
ACCESSION   KQ412172 JDCH01000000
VERSION     KQ412172.1
DBLINK      BioProject: PRJNA193471
            BioSample: SAMN03959805
KEYWORDS    WGS.
SOURCE      Termitomyces sp. J132
  ORGANISM  Termitomyces sp. J132
            Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina;
            Agaricomycetes; Agaricomycetidae; Agaricales; Tricholomatineae;
            Lyophyllaceae; Termitomyces.
REFERENCE   1  (bases 1 to 134962)
  AUTHORS   Hu,H. and Poulsen,M.
  TITLE     The genome of Termitomyces
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 134962)
  AUTHORS   Hu,H. and Poulsen,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2014) China National Genebank, BGI, Building No.
            11, Beishan Industrial Zone, Yantian District, Shenzhen, Guangdong
            518083, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 2.04
            Assembly Name         :: TerJ1321.0
            Genome Coverage       :: 81.0x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..134962
                     /organism="Termitomyces sp. J132"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold40"
                     /strain="J132"
                     /isolation_source="Mycelium fragment"
                     /db_xref="taxon:1306850"
                     /chromosome="Unknown"
                     /geo_loc_name="South Africa: Mookgophong"
                     /collection_date="Oct-2011"
     gene            complement(<11144..>13319)
                     /locus_tag="J132_07713"
     mRNA            complement(join(<11144..11337,11405..11971,12275..12557,
                     12612..12884,12938..13050,13106..13188,13240..>13319))
                     /locus_tag="J132_07713"
                     /product="Vacuolar protein sorting-associated protein 72
                     like protein"
     CDS             complement(join(11144..11337,11405..11971,12275..12557,
                     12612..12884,12938..13050,13106..13188,13240..13319))
                     /locus_tag="J132_07713"
                     /note="GO_component: GO:0005634 - nucleus [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - sequence-specific DNA binding
                     transcription factor activity [Evidence IEA];
                     GO_process: GO:0045449 - regulation of transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /product="Vacuolar protein sorting-associated protein 72
                     like protein"
                     /protein_id="KNZ82129.1"
                     /db_xref="InterPro:IPR008895"
                     /db_xref="InterPro:IPR013272"
                     /db_xref="UniProtKB/Swiss-Prot:Q9VKM6"
                     /translation="MDEQDTTMDAVEPLVTRRSRRSTAGNRMEAALAEMALDTTVDSV
                     DDDQDFVNDKEEEDVFGSDFESTDEEAQEDTEAGEKALLDEEKRTKKKDARSKVERVT
                     AAAHARQKVTFDPQGEVSTSRPKPKDLKRRVSLGPAVNAETGEVLPVHQPSPKKKRHS
                     QRTHTILATSAAAERLKRSEEKKAAMPKKAKIESKAYTQAELIALALDNEEGNIIDHR
                     DYLKIEEERRKRSRVVRTIIEGPLIRWISRREEIKEVVIPPPSAPTFTPGRAGFVYNS
                     YAAQSPTQSPQTSPQPASQPASQPTSQPTTSSTQTTSQPTTQSTQTAPQSISKSINQS
                     TISSGTQLTSQPSIRPTISSAVQLTAQSSTPTVTQRDPQSVTTPASQSNPYQSTHYNP
                     YIAQLQSASAMMWTPPPPTPVERIEKVTKNYIVHELAQNNGAPIPPWNETMAAMFGDD
                     VDWGALKVYTGKNRPLSRPKQKCPITGKEAKYFDPRTGVPYADLKAYDVLTKLLVHEY
                     AWNPSLRCYVGQDEAGSAPSAL"
     gene            <13445..>14097
                     /locus_tag="J132_07714"
     mRNA            join(<13445..13575,13624..13745,13799..>14097)
                     /locus_tag="J132_07714"
                     /product="hypothetical protein"
     CDS             join(13445..13575,13624..13745,13799..14097)
                     /locus_tag="J132_07714"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82130.1"
                     /db_xref="InterPro:IPR007741"
                     /translation="MPKPSPSYLAKVLVKLNALPKLHLTQLKSIKLSLAFRNDHFGAR
                     HFVKEQLPRIRWANPDLDIQVEKWRKTKQEAWRPEMELEFADGTQKTIDMHEKWSTTI
                     LKELMEVAGGEPWKKWEQEARASGQPVVPGEENERNIVKRQTLEPLPSLNVFRTTLPP
                     PRPEVPITPVDSTPKIGVSAALP"
     gene            <14726..>15554
                     /locus_tag="J132_07715"
     mRNA            join(<14726..14971,15040..15206,15253..15262,
                     15384..>15554)
                     /locus_tag="J132_07715"
                     /product="putative serine/threonine-protein kinase kinX"
     CDS             join(<14726..14971,15040..15206,15253..15262,15384..15554)
                     /locus_tag="J132_07715"
                     /note="GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /product="putative serine/threonine-protein kinase kinX"
                     /protein_id="KNZ82131.1"
                     /db_xref="InterPro:IPR000719"
                     /db_xref="InterPro:IPR001245"
                     /db_xref="InterPro:IPR017442"
                     /db_xref="UniProtKB/Swiss-Prot:Q23915"
                     /translation="LLDKPELDVPFRRHLVVATQRLAKRSQLYPACYELQDIIQDNRL
                     PVEAGGFADIYKGRFEGQTVCLKAIRVYQSTRIEYLLKQISQESILWGQLEHVNVLPF
                     YGLFRFNGRLCFVSPWMEAGDIRIYLTNYPDANRAHILRPNILIDNSGRARLADFGLS
                     GMSDPQILAWTSTSSAGSRGGSVRWQAPELFDVKNDV"
     gene            complement(<17308..>18289)
                     /locus_tag="J132_07716"
     mRNA            complement(join(<17308..17496,17551..17616,17802..18121,
                     18172..>18289))
                     /locus_tag="J132_07716"
                     /product="hypothetical protein"
     CDS             complement(join(17308..17496,17551..17616,17802..18121,
                     18172..18289))
                     /locus_tag="J132_07716"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82132.1"
                     /translation="MSASARAEARRKAILSRGSDRLAKLTTSARGDDPAYIHPDSPST
                     IRKASSNFLGEETTMPPPPNLTSSSRCPQNDPESVNVNPFTGSAPDPSVWSEQQQQQL
                     LQALMGGTRPPEPVPGLTPTDMDSSLPPPLDNPLAAMLFPRGQGPFFWAFTTLQLVLH
                     SVRIFSGFDTVQPPTLLAIVLPHLPPPLPSIIVNGIKYFQMGSLFLDDLAGLLVGIGF
                     IVMFSGWFATSS"
     gene            complement(<19945..>20835)
                     /locus_tag="J132_07717"
     mRNA            complement(<19945..>20835)
                     /locus_tag="J132_07717"
                     /product="hypothetical protein"
     CDS             complement(19945..20835)
                     /locus_tag="J132_07717"
                     /note="GO_function: GO:0003824 - catalytic activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82133.1"
                     /db_xref="InterPro:IPR003719"
                     /db_xref="UniProtKB/Swiss-Prot:Q9CKV2"
                     /translation="MSLKLRFVQLDVFSTVRFLGNPLAIVHIPEGVELSQSQKQLIAR
                     EFNLSETVFLHETSDSNAAVTIDIFTTTEELPFAGHPTIGSGWYLLSQTARKDTITLR
                     TKAGQIPVVRDGGRVVLQVPIDFKVHAPFLQPNLKALQPHLDDKDYMNGKHGAEALVS
                     IVKGMTFILLELTSEEALAKMQPLPTRITAPDLGDWAGLVGVYAFYERLDGVVRTRMF
                     DGTLEDPATGSAASTLAGWLARKNGPGKWNIEIVQGVEMGRRSEIAVKVEIGSDGEVV
                     RVDLGGSAVEAMEGLVCVDS"
     gene            complement(<25698..>26933)
                     /locus_tag="J132_07718"
     mRNA            complement(<25698..>26933)
                     /locus_tag="J132_07718"
                     /product="hypothetical protein"
     CDS             complement(25698..26933)
                     /locus_tag="J132_07718"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82134.1"
                     /translation="MTSHTDVQVSLSEDLYLLKRVQSSSCLPRYTFVNQQEFILNTVA
                     LYMTTGRPDGVVATFFHESTFTLYLAKSGPPNHIDAAKATSFLSCLKDATGFEALLPF
                     LALYSAENVEKRIRNLFYSLEEILELLAEIAPEDENTALESLKTLLEFPFTFDDTAEA
                     HDKFINIIAASSNLLKCFSSFQSAFPSKYANVYLSRLKRHLTKVVQYRDANRLIWFVQ
                     RNSSKITICWVPGTSQRQLSLTGTVVDRYLDGFLAWAIIDFDLNKKAQIRELMASALT
                     YRDQTIEVTVFVHPEIRLIMYLTDVVGVQSQYPPGTQLYIGSGKRICGCCEQWIDAFN
                     NCVTVKWMATFLNHGMRYDWKIPDPDLTQHIQVAVRQGNDAVLKSVERGMRDKLTREY
                     NYALDTLFDTWYRDRKYSH"
     gene            <37195..>38004
                     /locus_tag="J132_07719"
     mRNA            <37195..>38004
                     /locus_tag="J132_07719"
                     /product="hypothetical protein"
     CDS             37195..38004
                     /locus_tag="J132_07719"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82135.1"
                     /translation="MPMISLRIPQKGHSERLRMLAASRFKNPESESTNKHHRSDNTHH
                     DMKHLETIALYMVTGAPGDVVASAFKKTESGLGIVLAKNDKASDKDKEYACCFLRYLE
                     NPSDEAFLGSLPLLTSHSLKNLQYHVNKVGDLTTMICKKLDAKIESYVESSSDHFLDE
                     EEFPGHGQDLKKLWLRTGATRVSGVKQGLFKILDICRSKPELAQNSASHRVLQELILA
                     ASVFKDSSFSICLQSLTSEQRFHKSGPELFPKFWRNLDKLRQYLRIESLIQ"
     gene            complement(<41256..>42178)
                     /locus_tag="J132_07720"
     mRNA            complement(join(<41256..41571,41623..41733,41787..>42178))
                     /locus_tag="J132_07720"
                     /product="hypothetical protein"
     CDS             complement(join(41256..41571,41623..41733,41787..42178))
                     /locus_tag="J132_07720"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82136.1"
                     /db_xref="InterPro:IPR009009"
                     /translation="MHLSSSLAVLFLLFVSDIAPVAAKAHALNRLPRHHDLSERIPAA
                     NSTRLRRRRTCKHKKHPAHVPTTAAPTPTAGAAFKPAEWPAQTQAGAAPAATRASAAD
                     PFLTELSKSFNNKNNAYYTKVHTGDMTFYSTGTVSCGDTYDDSTFTAAVSKLMFDHWP
                     GATAETNRNPICGPYVPGRKSLNTAGEFVTSVHASSFVNLGGDGLLSCAPDSQCHVPM
                     TATVKRGDKQIVVKIVDRCEACKEGDIDLTMTAFAALADPALGRTGVTWWFNQY"
     assembly_gap    42480..46263
                     /estimated_length=3784
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<46363..>47503)
                     /locus_tag="J132_07721"
     mRNA            complement(join(<46363..46411,46470..46889,46945..47060,
                     47112..47412,47463..>47503))
                     /locus_tag="J132_07721"
                     /product="hypothetical protein"
     CDS             complement(join(46363..46411,46470..46889,46945..47060,
                     47112..47412,47463..47503))
                     /locus_tag="J132_07721"
                     /note="GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82137.1"
                     /db_xref="InterPro:IPR006076"
                     /translation="MLEAREACSGATGRNGGHITPVLYEQYPDLKDAFGPETAMQIMR
                     FRLAHISALLEAAREEGLLEDTGCRRVDAFDVYRSQELFKESKRKLEVYQRELPVEGE
                     AYKVREGEEVIKELQLNENTAGCISTRAGAVHPYRLVTGILARLLREYPSTFRLFTRT
                     PCTAVSVAARDGVELYEVTTPRGTIRTPHVVHATNGWVSHLLPGMRGKIVPARGTMTA
                     QTVKNEQWAGERSFVFFPGTGTHTFDYLTQQPVGGGGRYPAPEGEMMLGGAYAKGNWM
                     EEMGNADDAGWDGKAGTCGAGCSGCRWTGSRG"
     assembly_gap    48325..48399
                     /estimated_length=75
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<49488..>53319)
                     /locus_tag="J132_07722"
     mRNA            complement(join(<49488..49604,49698..49846,49899..49936,
                     49987..50033,50092..50110,50164..50214,50275..50294,
                     50348..50460,50514..50614,50663..50750,50802..50809,
                     50863..51004,51124..51169,51225..51291,51347..51405,
                     51455..51568,51641..51691,51745..51786,51839..51916,
                     51972..52127,52185..52273,52322..52360,52414..52484,
                     52538..52732,52793..52865,52917..53139,53194..>53319))
                     /locus_tag="J132_07722"
                     /product="MutS like protein"
     CDS             complement(join(49488..49604,49698..49846,49899..49936,
                     49987..50033,50092..50110,50164..50214,50275..50294,
                     50348..50460,50514..50614,50663..50750,50802..50809,
                     50863..51004,51124..51169,51225..51291,51347..51405,
                     51455..51568,51641..51691,51745..51786,51839..51916,
                     51972..52127,52185..52273,52322..52360,52414..52484,
                     52538..52732,52793..52865,52917..53139,53194..53319))
                     /locus_tag="J132_07722"
                     /note="GO_function: GO:0005524 - ATP binding [Evidence
                     IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /product="MutS like protein"
                     /protein_id="KNZ82138.1"
                     /db_xref="InterPro:IPR000432"
                     /db_xref="InterPro:IPR007696"
                     /db_xref="UniProtKB/Swiss-Prot:O15457"
                     /translation="MTALSAKYEGNYVIALLEGRGVAREVGMAALDKDTGKVMLVQLA
                     DCQTYVKTLHQMHLHPPCLVLVPDTFLSGCDIPSGSSSKRPSAMSLLVQCIQEEFPGV
                     HLEPVARRYWNDSGGLEFILQLCVEDDERAGTVIAVSNKYYALSATCALFKHAEAKMN
                     TRFATGSLRIRYVPVEGTMMIDPDTARNLELVENMTYRKSAHSLFGVLNHTYTAMASR
                     LLRVNLLSPITVQTSIDARLDVVEEFIRTEDRYTEVRDALKAFNKMDFDKLIVSLASQ
                     EVRVANTAKVASSRILQMLNLRNVVKNLPLLQKALAGSQSQLLRIIHDLISDERLTKI
                     ESLVTANLNEDGAPAKGGIGAVNARVYAVKAHRNRLLDVARETYKENETGFVYTLKKT
                     DLEGELPPGFTNVSVKKGKWVFTSMDLQKMNARMKDALDETLMLSDAIVQDLVVEILT
                     DVGALYKASEAVALVDMLWSFAHSSIIRPEFTGTLAIKSGRHPILETIQSAGTLVPND
                     VYCDDSSSFQIIHGPNMSGKSTYLKQIGLLTVMAMTGCFVPAEYASFRIHDALLTRLS
                     NDDDLEKSLSTFASEMASSAMIIGLATPNSLVLVDELGRGTSPRDGLGISHAIGEELI
                     ALKPFVFFATHFKELTLTLSRQPTVINLHLSVHRSRPSASNFGMTFQYKIVDGTPEDS
                     NHYGLELARLADLPNDVLTEGKRVAEALAALHAKHEEESESSRAAVRRKALLRLRTQL
                     IQAFEHSALPDQELLAYLHRFQDDIAKVFLHMK"
     gene            complement(<55850..>57664)
                     /locus_tag="J132_07723"
     mRNA            complement(<55850..>57664)
                     /locus_tag="J132_07723"
                     /product="RNA-directed DNA polymerase from mobile element
                     jockey"
     CDS             complement(55850..57664)
                     /locus_tag="J132_07723"
                     /note="GO_function: GO:0003676 - nucleic acid binding
                     [Evidence IEA];
                     GO_function: GO:0004523 - ribonuclease H activity
                     [Evidence IEA]"
                     /codon_start=1
                     /product="RNA-directed DNA polymerase from mobile element
                     jockey"
                     /protein_id="KNZ82139.1"
                     /db_xref="InterPro:IPR002156"
                     /db_xref="UniProtKB/Swiss-Prot:P21328"
                     /translation="MHHSWRQDRGHSPSIKLPMPDGTKIEIKARETMRILGLHIDRKF
                     TFNQHVCKVAQKAKSIAMGSCILANTIRGVNQMQLCTIYRACMVPVITYACTVWWTGK
                     KVHLEKLTKIQTYALRHMAGAFRTTPTKALEVDMAIPPLEIVMDTVVGGYTNRLLRLK
                     ESNPIIGRLKDDWRQTGQAANTPPLPSRKPTKRKKNQKLNQLKRIAKMMYKPMEGEHI
                     DPFFPPPWHNTAERFGDRLIITGVPKKAKKKEEAKQHNERVHTLRADQTQLLMYSDGS
                     MKAMDTNKTKTVGWGFIGYYRGEEVLVDRGGLGSKAEVYDAKLMGIAKAVKAAMGYAR
                     THRQVKHIHIFADNTAAVTLVYKPKLKPGQLHMLNITHLVDKFLNKRPNNTVGIEWWA
                     GNVRVDREAKKGTEMWKQDYNTYTYAGRRVREAALETWTKEWWTAPQTGRFAIANNFP
                     PRWKTREDVVYMPREIFGRLTQCRTKHAFLGEYYAKFLPNENIGCTCSERYQTREHVI
                     QNCLEYEEQREILREANEQMELGTLLGTKDGLEAMTKFLGKTGAFTKMGHLRPILNEL
                     TAEDEDNDEEEESWWNRMERIREGEDGGGDRRGGLGRG"
     gene            <62620..>63107
                     /locus_tag="J132_07724"
     mRNA            join(<62620..62762,62826..62948,63020..>63107)
                     /locus_tag="J132_07724"
                     /product="hypothetical protein"
     CDS             join(62620..62762,62826..62948,63020..63107)
                     /locus_tag="J132_07724"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82140.1"
                     /translation="MPALTLPTFPEDVPTHPLLIIDYRLISARGSHEIDRLWEAATKL
                     GFWYLKNHGVDEEVDGMFEMGAETMKLPLEEKMRFEQGDSGMSFGYKAAGANAVDATG
                     RLDTVEFIYIAKDEN"
     gene            complement(<63573..>64343)
                     /locus_tag="J132_07725"
     mRNA            complement(join(<63573..64046,64104..>64343))
                     /locus_tag="J132_07725"
                     /product="hypothetical protein"
     CDS             complement(join(63573..64046,64104..64343))
                     /locus_tag="J132_07725"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82141.1"
                     /translation="MVNKNFIMEDQEFVLVNRDPNDCRNRKDTAGNPGFDFVIVVTGL
                     DVAHVVVERIQETTITRRYSSAFSMQSFHQAMDALTLKDTPKPTLPLDNPAIPDKMFL
                     PLPKRTSGNKGHHMYYGFPVSEDWVSAYCDLNSHRIENYGPDFNIMDKIDIVLQLLRV
                     SSTIKNLDYASVFPEGADVLNLEAHRGRRCDCILTVCNTRPRSYRNRPTQSQFNELQS
                     IMGAEAGWYIDLYPIAGGK"
     assembly_gap    65900..66424
                     /estimated_length=525
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <68174..>68437
                     /locus_tag="J132_07726"
     mRNA            <68174..>68437
                     /locus_tag="J132_07726"
                     /product="hypothetical protein"
     CDS             <68174..68437
                     /locus_tag="J132_07726"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82142.1"
                     /db_xref="InterPro:IPR005135"
                     /translation="RGAIKFASLNIKGGGSTLTRTKWNELCQIIREEKIDVLAIQETQ
                     LDSVKTAELNSLFERQVLFISSLDPDTPNAKGVAFIINKRSVK"
     gene            70180..72330
                     /locus_tag="J132_07727"
                     /note="Ribonuclease H1; nonfunctional due to internal
                     stop"
     gene            complement(<77939..>78118)
                     /locus_tag="J132_07728"
     mRNA            complement(<77939..>78118)
                     /locus_tag="J132_07728"
                     /product="hypothetical protein"
     CDS             complement(77939..78118)
                     /locus_tag="J132_07728"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82143.1"
                     /db_xref="InterPro:IPR010285"
                     /translation="MTINKSQDQSVKHVGLDLQSGVFAHGQLYVAFSQCTSGDCIEVI
                     LDPENTSRKTANIVY"
     gene            complement(<78922..>79476)
                     /locus_tag="J132_07729"
     mRNA            complement(join(<78922..79378,79436..>79476))
                     /locus_tag="J132_07729"
                     /product="hypothetical protein"
     CDS             complement(join(78922..79378,79436..79476))
                     /locus_tag="J132_07729"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82144.1"
                     /db_xref="InterPro:IPR010285"
                     /translation="MPEPQQVWNVIPGKLLQEETDYDVEKLKRRVDENKARFNGEQLG
                     AFNEVMDSVDNNLGKMIFIHSAGECGKTFVCNTLASAVQSNGDVALYVASSGIAALLL
                     EGGRTVHSRFNIVIPTLIHPLPISKEDFNCLNSYSGPKLSSGMKFQCNTKMPLTLWIE
                     GLETS"
     gene            complement(<82152..>83013)
                     /locus_tag="J132_07730"
     mRNA            complement(join(<82152..82250,82306..82674,82726..>83013))
                     /locus_tag="J132_07730"
                     /product="hypothetical protein"
     CDS             complement(join(82152..82250,82306..82674,82726..83013))
                     /locus_tag="J132_07730"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82145.1"
                     /translation="MILPPPHTLALFQEQQRLKERQQEQALAALQEQQRLRHIALAEE
                     QKRQQEEALAVLHKQQRLRQIAIAEEQERQQQALAILSQEREREEEEQFMPEHIDLNP
                     EHRPLNAALAQRILQGWKQQHEADLEEDFNDLGPQNDIPSEIDLEYVDPTGHQAPEQL
                     DPPLDNPLGPQDDIPSDDDLEYVDPAGHQPAEQMDPPLDVPSGPQDDIPSDDDLEYVD
                     PDYKILLNRLILGFLFHHSLALFSLFQEEGNLT"
     assembly_gap    84361..84416
                     /estimated_length=56
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<88778..>92188)
                     /locus_tag="J132_07731"
     mRNA            complement(join(<88778..89071,89773..89910,89931..90026,
                     90077..90529,91901..>92188))
                     /locus_tag="J132_07731"
                     /product="hypothetical protein"
     CDS             complement(join(88778..89071,89773..89910,89931..90026,
                     90077..90529,91901..92188))
                     /locus_tag="J132_07731"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82146.1"
                     /translation="MSWYYSSKNLSLGALDHLVYNVILAPDFQCEDLEGFSAVQENRH
                     LDDEASDHLPETSESLPWLSSDVWRKSSVFLPLPFTHKSYKSEKHAPTIQIHNAAPCF
                     EGLFWRTSPTIDRKIQDLLFVMAAWHASAKMHLHTNWSLGIFCRLTKSFTHHLHIFSS
                     EVCPHFETRETPNEAEASACQKAAAVAKNTGNIESSKPAKTVQKGKVANTSHKTKSFR
                     LDIPKIHSIVHYPDSIQCFSTTDSYCTQIGEQEHKCVKAFYAQTNKNQFEAQIAQQSS
                     VGHAIQTTVEDEQLPPTNPEEHHYISKTKQTPLNLLKWVKDHVNDPAVKFTGGGIGHW
                     TTRDATHSLQQDVEEGFSIGNSSTDMDDSETDDQDQENASNNSSEDSSEDEDLSEEDN
                     KEDEEISEEESDDEQDDVELLDDSLGYAVL"
     gene            complement(<98254..>100035)
                     /locus_tag="J132_07732"
     mRNA            complement(join(<98254..98418,98468..98532,98598..98628,
                     98685..98811,98863..98977,99100..99157,99296..99389,
                     99442..99468,99572..99673,99731..99763,99811..99851,
                     99907..>100035))
                     /locus_tag="J132_07732"
                     /product="Transmembrane protein 184 like protein"
     CDS             complement(join(98254..98418,98468..98532,98598..98628,
                     98685..98811,98863..98977,99100..99157,99296..99389,
                     99442..99468,99572..99673,99731..99763,99811..99851,
                     99907..100035))
                     /locus_tag="J132_07732"
                     /codon_start=1
                     /product="Transmembrane protein 184 like protein"
                     /protein_id="KNZ82147.1"
                     /db_xref="InterPro:IPR005178"
                     /db_xref="UniProtKB/Swiss-Prot:Q54WM0"
                     /translation="MTKPVCVSDNKDVIDQSSFWDSNGVNWDAHRIGWAIAGSCTVVT
                     LIISIVSVGRHCRSYTNPREQRQILRILYMPPVYAIISFFSYRFFRSYTYYSFIEVGE
                     KAVTLSAFLLLLIEYVAATASGHKAENAIARKDKHPLPLPPYFMFTVKVESFFFHWFS
                     SVISIIGIICQKYDVLCESAGFSVHYANVYLEAVDFVSITFALYGLLVFYGLMAEELQ
                     GRRPLAKFMCIKLIVMFTFYQSFVFNALEGRVIKETTYWTATNIADGLNALTICIEMI
                     IFAGLMMWAYTPAEYKRKSGIPPTSIWRPLWDSYVVTLYHSSLMTHGFYSSA"
     gene            <100249..>101230
                     /locus_tag="J132_07733"
     mRNA            join(<100249..100382,100446..100509,100566..100935,
                     100992..>101230)
                     /locus_tag="J132_07733"
                     /product="hypothetical protein"
     CDS             join(100249..100382,100446..100509,100566..100935,
                     100992..101230)
                     /locus_tag="J132_07733"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82148.1"
                     /db_xref="InterPro:IPR010699"
                     /translation="MNNKKDVERGSSSSLLSFWSYLNSDVDPAQSTGPLAAFCFMTGY
                     LDAISFSSVFVWCGFQTGNFAQLAIAIARLFEGPIEFRDLTFHRADQQALCSLISFQL
                     GASVGRFGDWVGPLKRTWLITGTLLQALLTMAAAVTLWKSGELSIADVRDNPSWNNAL
                     SFATLAFISASLGVQGILGKRLNTQFGTTIVLTTIWVELASDPRLFKIREKVKSRDHK
                     LFAVVALFIGAFAGRALLGKLGSPAALGIAVGIRILITISWVFIGGKKAS"
     gene            complement(<103575..>103938)
                     /locus_tag="J132_07734"
     mRNA            complement(join(<103575..103754,103810..>103938))
                     /locus_tag="J132_07734"
                     /product="hypothetical protein"
     CDS             complement(join(103575..103754,103810..103938))
                     /locus_tag="J132_07734"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82149.1"
                     /translation="MSADPLPTSLYESLFLKLATVLELTQKSEGIVTPQAKQALLQAT
                     NDFKNTINQAKEFAGGLAGGEMLIEDQDEVIAMLEELRDRKRCAQTSLHRIFSKYLNE
                     "
     gene            <106801..>113499
                     /locus_tag="J132_07735"
     mRNA            join(<106801..106887,106949..107147,107206..107276,
                     107832..108074,108136..108459,108518..108764,
                     108819..108996,109052..109131,109185..109206,
                     109262..109309,109364..109424,109477..112906,
                     112965..113048,113101..113178,113228..113257,
                     113320..113331,113384..>113499)
                     /locus_tag="J132_07735"
                     /product="DNA-directed RNA polymerase II subunit rpb1"
     CDS             join(106801..106887,106949..107147,107206..107276,
                     107832..108074,108136..108459,108518..108764,
                     108819..108996,109052..109131,109185..109206,
                     109262..109309,109364..109424,109477..112906,
                     112965..113048,113101..113178,113228..113257,
                     113320..113331,113384..113499)
                     /locus_tag="J132_07735"
                     /note="GO_component: GO:0005665 - DNA-directed RNA
                     polymerase II, core complex [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed RNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006350 - transcription [Evidence IEA];
                     GO_process: GO:0006366 - transcription from RNA polymerase
                     II promoter [Evidence IEA]"
                     /codon_start=1
                     /product="DNA-directed RNA polymerase II subunit rpb1"
                     /protein_id="KNZ82150.1"
                     /db_xref="InterPro:IPR000684"
                     /db_xref="InterPro:IPR000722"
                     /db_xref="InterPro:IPR006592"
                     /db_xref="InterPro:IPR007066"
                     /db_xref="InterPro:IPR007073"
                     /db_xref="InterPro:IPR007075"
                     /db_xref="InterPro:IPR007080"
                     /db_xref="InterPro:IPR007081"
                     /db_xref="InterPro:IPR007083"
                     /db_xref="UniProtKB/Swiss-Prot:P36594"
                     /translation="MLGHSFAFSTAPIRKVKEVQFGILSPEEIKAVSVAKIEHPEVMD
                     ETTHRPKMGGLMDPRMGTIDRNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVK
                     KILESICVNCGKLKADILDPNFADKIRHIRDPKARMAMVWSHCKGKTVCEPDDPKEEG
                     AEDGDEVKKGHGGCGHVQPQIRKEGLKLFLQYKKSKDDDEEMKSLQPDKRLITPSEVY
                     TVFKKMSDSDLHLLGLSEEYARPEWMILTVMPVPPPPVRPSIAVDGGAMRSEDDLTYK
                     LGDIIKASANVRRCEQEGAPAHVISEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVK
                     AIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPKSIAMNLTFPERVT
                     PYNIAYLQELVRNGPTTYPGARYVVRDTGERIDLRYNKRADAFLQYGWVVERHLKDGD
                     FVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETR
                     AELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNAVQNILLWVPDW
                     DGTVPIPAIVKPKPLWTGKQILSMTIPRGINIHRAPEPRSSNPVFDDGMMIENGEIIF
                     GIVEKKTVGASQGGLVHVVFREKGPEATRQLFTGLQMVVNYWLFHNGFSIGIGDTIAD
                     PKTMDYITKRIQQSKTEVAQIIDNAYHDRLKAAPGMTIRESFESLVERSLNLARDHSG
                     QYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRRIPFGFRHRTLPHFT
                     KDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE
                     DVTVCYDGTVRNSLGDLIQFVYGEDGMDGAFIEKQTIETFGLSDKEFEHNYRVDVTDP
                     AGGFLPGVLQIGIDDSSLELQSKLDEEYTRLLEDRRVLRNFIFPRAPTNIPHYLPVNL
                     QRIVQNATQIFHIDRRKPSDLEPAYIVDAVEELCKRLIVVRGDDELSQEAQTNATLNF
                     RMHLRASFATRRVLEKFHLTREAFDWVLGEVESKFNQSVAHPGEMCGTLAAQSIGEPA
                     TQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLTVYLEPEIAQSSTLAKNV
                     QQELAYTSLRTVTASVEIWYDPDPSTTIIEEDALFVESFFAIPDEEIESKLHLQSPWL
                     LRLEMDRAKMIDRKLTMQYVATRIAESFKTDLFVIWSEDNSEKLIIRCRVIGGKDDED
                     DKIEEDQFLRALETTMLNSVSLRGVKGVKRVFLMEQKKVVITPDGSIDTEKEKEWVLE
                     TDGVNLKTVMTVEGVDFKRTYSNSCVEIFNVLGIEAARAAIMKELRSVIEFDGSYVNY
                     RHLALLCDLMTHRGTLMAITRHGINRADTGALMRCSFEETVEILMEAAAVGEKDDCHG
                     IAENVMFGQMAPMGTGAFDVALDIDMLKDAIVDHRLPVQTMLAAHIDGGMTPGQVAMT
                     PYDTNSPVWQEGIFKGDQASFSPLAVNGGEDAANFQYLGFGQSPLGAGGMSPGGPGYS
                     PSSPNAYSPTSPSFVPQSPYGGATSPFGTSPYATSPFYDRSRGPTSPTYSPTSPALNL
                     TSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPTSPRYSPSK
                     FSLLYYLNLIINHALLNVFLLTASPTQLSPSSPKYSPTSPMASPSSPKYSPTSPTYSP
                     ASPAYSPASPAYSPTSPQWSPSSPAQNGGTNRGHSYQSSPSWD"
     gene            122273..122674
                     /locus_tag="J132_07736"
                     /note="hypothetical protein; nonfunctional due to internal
                     stop"
     gene            <123407..>126005
                     /locus_tag="J132_07737"
     mRNA            join(<123407..123724,124007..124085,124400..124962,
                     125682..>126005)
                     /locus_tag="J132_07737"
                     /product="hypothetical protein"
     CDS             join(<123407..123724,124007..124085,124400..124962,
                     125682..126005)
                     /locus_tag="J132_07737"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNZ82151.1"
                     /translation="FFLPVHILTIPHIPWVQHNCPIPPGLEKEVCEIIHKKIKAGIYE
                     PSNSTYHLQWFCILKKNGKLRIVHSLELLNHVTICHSGVPPFPDHVAESFAGCICGTT
                     LNLYFFELLNRILQWMKYCGGTFSGHKLVLFILAVDTSYIAVGYYLCQCTSENHKKHH
                     YNHFESIMLNNREARFSQLKLELYGLYQALQALQMYLIGIRNLIIEVNACYIKGMLQN
                     PDIQSSASMNCWIMAILMFHFELIHIKGTFHGPDGLLQHPLQPSDPLPNNSNNSIYKD
                     WINCLHSFIHQVQLLLPLLCQVSTASCRLPPLVEFPPLQPLATFTYLAKKYNLHHIWI
                     SGYNKYANGIVKQPHFDVHQALFKAVDGDQSRWSTATYAVFWSECVTVCKQMGCSPYY
                     AMTGIHSLLPANIVKVTYLQPLPNSFLSTTNLITC"
     assembly_gap    134146..134414
                     /estimated_length=269
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
CONTIG      join(JDCH01000088.1:1..42479,gap(3784),JDCH01000089.1:1..2061,
            gap(75),JDCH01000090.1:1..17500,gap(525),JDCH01000091.1:1..17936,
            gap(56),JDCH01000092.1:1..49729,gap(269),JDCH01000093.1:1..548)
//