LOCUS       KQ151220               59993 bp    DNA     linear   CON 22-JUL-2015
DEFINITION  Spinacia oleracea cultivar SynViroflay unplaced genomic scaffold
            scaffold20548, whole genome shotgun sequence.
ACCESSION   KQ151220 AYZV02000000
VERSION     KQ151220.1
DBLINK      BioProject: PRJNA41497
            BioSample: SAMN02182572
KEYWORDS    WGS.
SOURCE      Spinacia oleracea (spinach)
  ORGANISM  Spinacia oleracea
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae;
            Anserineae; Spinacia.
REFERENCE   1  (bases 1 to 59993)
  AUTHORS   Dohm,J.C., Minoche,A.E., Holtgrawe,D., Capella-Gutierrez,S.,
            Zakrzewski,F., Tafer,H., Rupp,O., Sorensen,T.R., Stracke,R.,
            Reinhardt,R., Goesmann,A., Kraft,T., Schulz,B., Stadler,P.F.,
            Schmidt,T., Gabaldon,T., Lehrach,H., Weisshaar,B. and
            Himmelbauer,H.
  TITLE     The genome of the recently domesticated crop plant sugar beet (Beta
            vulgaris)
  JOURNAL   Nature 505 (7484), 546-549 (2014)
   PUBMED   24352233
REFERENCE   2  (bases 1 to 59993)
  AUTHORS   Dohm,J.C., Minoche,A.E., Holtgraewe,D., Capella-Gutierrez,S.,
            Zakrzewski,F., Tafer,H., Rupp,O., Rosleff Soerensen,T., Stracke,R.,
            Reinhardt,R., Goesmann,A., Kraft,T., Schulz,B., Stadler,P.F.,
            Schmidt,T., Gabaldon,T., Lehrach,H., Weisshaar,B. and
            Himmelbauer,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUN-2015) Centre for Genomic Regulation (CRG), C. Dr.
            Aiguader 88, Barcelona 08003, Spain
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 1.05
            Assembly Name         :: Spinach-1.0.3
            Genome Coverage       :: 60.1x
            Sequencing Technology :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..59993
                     /organism="Spinacia oleracea"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold20548"
                     /cultivar="SynViroflay"
                     /db_xref="taxon:3562"
                     /chromosome="Unknown"
                     /tissue_type="leaf"
                     /note="genotype: Viroflay"
     assembly_gap    726..736
                     /estimated_length=11
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    12055..12055
                     /estimated_length=1
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    12165..12507
                     /estimated_length=343
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    13027..13404
                     /estimated_length=378
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    18455..18455
                     /estimated_length=1
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    20320..20320
                     /estimated_length=1
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    20416..20725
                     /estimated_length=310
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    20868..20868
                     /estimated_length=1
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    21174..21302
                     /estimated_length=129
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            24106..28871
                     /locus_tag="SOVF_110340"
                     /note="stable ID ismd"
     mRNA            join(24106..24695,25486..25937,27153..27386,27480..27806,
                     28360..28871)
                     /locus_tag="SOVF_110340"
                     /product="hypothetical protein"
     CDS             join(24167..24695,25486..25937,27153..27386,27480..27806,
                     28360..28656)
                     /locus_tag="SOVF_110340"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNA14103.1"
                     /translation="MAPIDPHSYTDSTHPFTTHIALSLYFDFSSSIIHSSALLSLSSP
                     HTGDLSLDTRALSITSVVDAETLTPIPFSLSSEIDSIKGALLTVSLSNQARFLISFET
                     SPNSSALQWLSPPQTFNKTSPFVYTQCQAIHARSIFPCQDTPAARIKYSAKINIPRTL
                     SAVMSARHVERRVPTAGEAGSACDDSIWCAENRVVEEFVMEQPIPPYLFAFAVGEISH
                     REVGPRTRVYAESVPSVLDAAATEFAGTEDMIRQGEKLFGPYDWERFDLLVLPPSFPY
                     GGMENPRMVFLTPTVIKGDATGAQVVAHELAHSWTGNLITNKNNEHFWLNEGFTTYAE
                     RRIVEVVQGEDRAALNIGIGWKGLNDEMERFKDNMEFTKLKTQQEGVDPDDVYSQVPY
                     EKGFQFLWRIERQIGRPAFDEFLKKYISTFKFQSIDTETFLVFLKENIPGIEKEINLE
                     LWTEGTGIPPDALAPESKLYTQIVSLAYEFRNGRMPKEDEVADWGGQEWELYLEFLPK
                     SVEASQISALDARYQLAESKDYEVKVAFLQLAISSGCRDYYGEVEKTLKEVGRMKYLR
                     PLYTYLVQGPGKEEEKILAKRVFAENRACYHPIAQGVVEAILSKHL"
     assembly_gap    30264..30264
                     /estimated_length=1
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    30450..30592
                     /estimated_length=143
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    31664..31664
                     /estimated_length=1
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(32257..33411)
                     /locus_tag="SOVF_110350"
                     /note="stable ID deej"
     mRNA            complement(join(32257..32699,32948..33411))
                     /locus_tag="SOVF_110350"
                     /product="hypothetical protein"
     CDS             complement(join(32449..32699,32948..33374))
                     /locus_tag="SOVF_110350"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNA14104.1"
                     /translation="MNLIRIITACSHTIQGNDFKAIQGNDFKALIYEFMNGESLETWL
                     HLNEENNNEILEVGKLSRLQRVNIAVDVACALDYIHHGCEVRIVHRDLKQKPSNVLLD
                     TDMVAHVGDFVLARFLPQPSHPNQSSSPAAVKGTIGYAAPEYGLGADPTTAGDVYSYG
                     FLLEMMTGKRPTEEMFNEAGLNLHTYVSAALPDNVMQIIDPSLLDNEGDLINDTRTRG
                     ETAIIGR"
     assembly_gap    36789..36825
                     /estimated_length=37
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(39965..40981)
                     /locus_tag="SOVF_110360"
                     /note="stable ID sdpm"
     mRNA            complement(39965..40981)
                     /locus_tag="SOVF_110360"
                     /product="hypothetical protein"
     CDS             complement(40119..40817)
                     /locus_tag="SOVF_110360"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNA14105.1"
                     /translation="MESTLFLSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTHKH
                     PTTTTITAAISRTKKEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTL
                     IVAKNTLVEKAVQDTQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDND
                     FTGACFEGKFYGPGEVKRLETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLL
                     KAYIKKLEDEQQQG"
     assembly_gap    41640..41727
                     /estimated_length=88
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    42481..42481
                     /estimated_length=1
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(44384..50551)
                     /locus_tag="SOVF_110370"
                     /note="stable ID heut"
     mRNA            complement(join(44384..44734,44841..44924,45019..45217,
                     46319..46386,47020..47115,47604..47805,47899..47970,
                     48389..48429,48557..48630,50058..50093,50260..50363,
                     50455..50551))
                     /locus_tag="SOVF_110370"
                     /product="hypothetical protein"
     CDS             complement(join(44660..44734,44841..44924,45019..45217,
                     46319..46386,47020..47115,47604..47805,47899..47970,
                     48389..48429,48557..48630,50058..50093,50260..50363,
                     50455..50498))
                     /locus_tag="SOVF_110370"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KNA14106.1"
                     /translation="MISQPLLHNSAQFKGLPFGIAFDIDGVILRGRAPIAGAAQAIQR
                     LYHKDGTMKVPFLFLTNGGGLPESKRALELSELLGVNILPSQVVQGHSMFRNLLGRYQ
                     NELIVATGKGDPALVMSEYGFNKVFSIEEYTSYFKDIDPVSQYKNWTTMPKNDQSSTL
                     MKKASACDVYRERVKAAFVVSDPVDWGRDIQVLCDILRTGSPSGQENGGQPALYFAAD
                     DLEYQAAFPAKRLGVGAFRIALESIFNRVHHTPLECIIYGKPEPLAFKNAEATLRQLH
                     CHTDFDVQLNNNQSDYFRALYMVGDNPSVDIKGARQAGDPWIPVLTRTGLFQGKGNHK
                     EYPADLVVDTVKDAVDYILEKEFSSVCTSG"
     assembly_gap    54096..54096
                     /estimated_length=1
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    59696..59777
                     /estimated_length=82
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
CONTIG      join(AYZV02084247.1:1..725,gap(11),AYZV02084248.1:1..11318,gap(1),
            AYZV02084249.1:1..109,gap(343),AYZV02084250.1:1..519,gap(378),
            AYZV02084251.1:1..5050,gap(1),AYZV02084252.1:1..1864,gap(1),
            AYZV02084253.1:1..95,gap(310),AYZV02084254.1:1..142,gap(1),
            AYZV02084255.1:1..305,gap(129),AYZV02084256.1:1..8961,gap(1),
            AYZV02084257.1:1..185,gap(143),AYZV02084258.1:1..1071,gap(1),
            AYZV02084259.1:1..5124,gap(37),AYZV02084260.1:1..4814,gap(88),
            AYZV02084261.1:1..753,gap(1),AYZV02084262.1:1..11614,gap(1),
            AYZV02084263.1:1..5599,gap(82),AYZV02084264.1:1..216)
//