LOCUS KN666991 75439 bp DNA linear CON 17-DEC-2014 DEFINITION Glycine soja cultivar W05 unplaced genomic scaffold scaffold245, whole genome shotgun sequence. ACCESSION KN666991 AZNC01000000 VERSION KN666991.1 DBLINK BioProject: PRJNA223435 BioSample: SAMN02905861 KEYWORDS WGS. SOURCE Glycine soja ORGANISM Glycine soja Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja. REFERENCE 1 (bases 1 to 75439) AUTHORS Lam,H.-M., Qi,X., Li,M.-W., Liu,X., Xie,M., Ni,M. and Xu,X. TITLE Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing JOURNAL Unpublished REFERENCE 2 (bases 1 to 75439) AUTHORS Lam,H.-M., Qi,X., Li,M.-W., Liu,X., Xie,M., Ni,M. and Xu,X. TITLE Direct Submission JOURNAL Submitted (01-JUL-2014) School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Science center EG13, CUHK, Shatin, N.T. HKSAR, Hong Kong COMMENT ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2010 Assembly Name :: W05v1.0 Genome Coverage :: 63.1x Sequencing Technology :: Illumina GAII ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..75439 /organism="Glycine soja" /mol_type="genomic DNA" /submitter_seqid="scaffold245" /cultivar="W05" /db_xref="taxon:3848" /chromosome="Unknown" /tissue_type="root" /dev_stage="7d seedlings" /geo_loc_name="Hong Kong" /lat_lon="22.4242 N 114.2072 E" /collection_date="May-2010" gene 607..1550 /locus_tag="glysoja_048172" mRNA join(607..779,863..1550) /locus_tag="glysoja_048172" /product="Chalcone synthase 6" CDS join(607..779,863..1484) /locus_tag="glysoja_048172" /EC_number="2.3.1.74" /note="GO_function: GO:0016746 - transferase activity, transferring acyl groups [Evidence IEA]; GO_process: GO:0009058 - biosynthetic process [Evidence IEA]" /codon_start=1 /product="Chalcone synthase 6" /protein_id="KHN07531.1" /db_xref="InterPro:IPR001099" /db_xref="InterPro:IPR012328" /db_xref="UniProtKB/Swiss-Prot:P30080" /db_xref="UniProtKB/TrEMBL:B9H088" /translation="MIKKRYMYLNEEILKENPSVCAYMAPSLDARQDMVVVEVPKLGK EAATKAIKEWGQPKTLSLRQALHEITAVTFRGPSDTHLDSLVGQALFGDGAAAIIVGS DPLPAEKPLFELVWTAETILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIQKALVE AFQPLGIDDYNSIFWIAHPGGPAILDQVEAKLGLKPEKMEATRHVLSEYGNMSSACVL FILDQMRKKSIENGLGTTGEGLEWGVLFGFGPGLTVETVVLRSVTV" assembly_gap 1966..4859 /estimated_length=2894 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(7063..11480) /locus_tag="glysoja_048173" mRNA complement(join(7063..7181,7535..7593,7768..7834, 7978..8071,8196..8308,8452..8545,8670..8797,8881..9106, 9205..9332,10981..11415,11471..11480)) /locus_tag="glysoja_048173" /product="CRS2-associated factor 2, mitochondrial" CDS complement(join(7063..7181,7535..7593,7768..7834, 7978..8071,8196..8308,8452..8545,8670..8797,8881..9106, 9205..9332,10981..11415,11471..11480)) /locus_tag="glysoja_048173" /note="GO_function: GO:0003723 - RNA binding [Evidence IEA]" /codon_start=1 /product="CRS2-associated factor 2, mitochondrial" /protein_id="KHN07532.1" /db_xref="InterPro:IPR001890" /db_xref="UniProtKB/Swiss-Prot:Q9FFU1" /db_xref="UniProtKB/TrEMBL:B9I7U3" /translation="MQSPTSFVPDHQYDPPFSPSPKPYYKSKKNHAEKKKKNNSENGD PNKNEAPKLPFKSNLPFDFRYSYSESDPSVGPISFRESPKFSPFGPGRIDRKWAGVSA PVQGEPDRERVEEERNRILGEPLSEVEVAELIERYRHSDCARQINLGKGGVTHNMLGD IHNHWKKAEAVRIKCLGVPTLDMDNVCFHLEDKSGGKVIYRNINILLLYRGRNYDTKN CPVIPLMLWKPYAPIYPRLVKNVIEGLTYEETKEMRKSGLNSDPLLKLTRNGVYVNVV ERVREAFKTQEVVKLDCIHVGTSDCKKIGVKLRDLVPCVPILFKDEQIILWRGNFKEE QPSDSQCEKCIDSWLKLLNHQEVVKLDCIHVGTSDCKKIGVKLRDLVPCVPILFKDEQ IILWRGNFKEEQPSDSQCEKCIDSWLKLLNLLVCSVFKSLYSVDTMCCVLRILMHHGN TGVDHMLISGQETCVSLDSMVPNQDYTFLLKKEIAREQDK" assembly_gap 21390..22197 /estimated_length=808 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 27830..27858 /estimated_length=29 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<29267..29419) /locus_tag="glysoja_048174" mRNA complement(<29267..29419) /locus_tag="glysoja_048174" /product="hypothetical protein" CDS complement(<29267..29419) /locus_tag="glysoja_048174" /codon_start=1 /product="hypothetical protein" /protein_id="KHN07533.1" /translation="MASLQAEKLVESQSLRQVKKEPAKPSGSTPKAPSSKSAPKKTQK RSQPKQK" assembly_gap 31312..31830 /estimated_length=519 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 32699..38582 /estimated_length=5884 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 42515..42818 /estimated_length=304 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(47506..48451) /locus_tag="glysoja_048175" mRNA complement(join(47506..47709,48237..48310,48400..48451)) /locus_tag="glysoja_048175" /product="Putative F-actin-capping protein subunit beta" CDS complement(join(47506..47709,48237..48310,48400..48451)) /locus_tag="glysoja_048175" /codon_start=1 /product="Putative F-actin-capping protein subunit beta" /protein_id="KHN07534.1" /db_xref="UniProtKB/Swiss-Prot:Q9M9G7" /db_xref="UniProtKB/TrEMBL:C6TCA7" /translation="MWEDDNEGFVACFLIKKDGSKTGQGRRGYLEEGAWDAIHVIEMS MKLSVADGHLCNMEMMIEEMESKLRNSLDQVLLDYTGFNCVLVVFEISFFTFCSLMGK GLGIYQI" gene complement(52109..56611) /locus_tag="glysoja_048176" mRNA complement(join(52109..52759,53438..53616,53736..53906, 55912..56611)) /locus_tag="glysoja_048176" /product="ABC transporter G family member 21" CDS complement(join(52109..52759,53438..53616,53736..53906, 55912..56611)) /locus_tag="glysoja_048176" /note="GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATPase activity [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]" /codon_start=1 /product="ABC transporter G family member 21" /protein_id="KHN07535.1" /db_xref="InterPro:IPR003439" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR013525" /db_xref="InterPro:IPR017871" /db_xref="UniProtKB/Swiss-Prot:Q7XA72" /db_xref="UniProtKB/TrEMBL:G7I4Z2" /translation="MVGPGEVMAMLGPSGSGKTTLLTALAGRLDGKLSSAITYNGHPF SSSMKRNIGFVSQDDVLYPHLTVLESLTYAAMLKLPKSLTREEKMEQVEMIIVDLGLS RCRNSPVGGGAALFRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAQRIMAM LQSLAGAYRTVVTTIHQPSSRLYWMFDKVVMLSDGYPIFTGQTDQVMDYLESIGFVPV FNFVNPADFLLDLANGIVADVKQEEQIDHHEDQASIKQFLVSSYKKNLYPLLKQEIQQ NHRELAFLTSGAPRSSENQWTTSWWEQFMVLLKRGLMERRHESYSRLRIFQVLSVSIL SGLLWWHSDPSHIHDQVGLLFFFSIFWGFYPLFNAVFAFPLERPMLMKERSSGMYHLS SYYVARMVGDLPMEFVLPTIFVAISYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLA LGAILMDVKQATTLASVTMLVFLLAGGYYIRHIPFFIAWLKYISFSHYCYKLLVGVQY SVNEVYQCRHGLHCRIRDFLAIKCLGLDSLWGDVAVLAVMLIGYRVVAYLALRMGLHH " assembly_gap 57159..57207 /estimated_length=49 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 70177..72292 /estimated_length=2116 /gap_type="within scaffold" /linkage_evidence="paired-ends" CONTIG join(AZNC01030602.1:1..1965,gap(2894),AZNC01021360.1:1..16530, gap(808),AZNC01018541.1:1..5632,gap(29),AZNC01093481.1:1..3453, gap(519),AZNC01036532.1:1..868,gap(5884),AZNC01048584.1:1..3932, gap(304),AZNC01014925.1:1..14340,gap(49),AZNC01122290.1:1..12969, gap(2116),AZNC01065942.1:1..3147) //