LOCUS KN662924 234018 bp DNA linear CON 17-DEC-2014 DEFINITION Glycine soja cultivar W05 unplaced genomic scaffold scaffold4743, whole genome shotgun sequence. ACCESSION KN662924 AZNC01000000 VERSION KN662924.1 DBLINK BioProject: PRJNA223435 BioSample: SAMN02905861 KEYWORDS WGS. SOURCE Glycine soja ORGANISM Glycine soja Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja. REFERENCE 1 (bases 1 to 234018) AUTHORS Lam,H.-M., Qi,X., Li,M.-W., Liu,X., Xie,M., Ni,M. and Xu,X. TITLE Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing JOURNAL Unpublished REFERENCE 2 (bases 1 to 234018) AUTHORS Lam,H.-M., Qi,X., Li,M.-W., Liu,X., Xie,M., Ni,M. and Xu,X. TITLE Direct Submission JOURNAL Submitted (01-JUL-2014) School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Science center EG13, CUHK, Shatin, N.T. HKSAR, Hong Kong COMMENT ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 2010 Assembly Name :: W05v1.0 Genome Coverage :: 63.1x Sequencing Technology :: Illumina GAII ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..234018 /organism="Glycine soja" /mol_type="genomic DNA" /submitter_seqid="scaffold4743" /cultivar="W05" /db_xref="taxon:3848" /chromosome="Unknown" /tissue_type="root" /dev_stage="7d seedlings" /geo_loc_name="Hong Kong" /lat_lon="22.4242 N 114.2072 E" /collection_date="May-2010" gene complement(2461..7805) /locus_tag="glysoja_042176" mRNA complement(join(2461..2877,3301..3409,3731..3879, 3977..4079,4356..4531,4650..4712,4909..4997,5096..5206, 5367..5501,6163..6328,6449..6736,7339..7805)) /locus_tag="glysoja_042176" /product="Pyruvate kinase isozyme G, chloroplastic" CDS complement(join(2770..2877,3301..3409,3731..3879, 3977..4079,4356..4531,4650..4712,4909..4997,5096..5206, 5367..5501,6163..6328,6449..6736,7339..7569)) /locus_tag="glysoja_042176" /EC_number="2.7.1.40" /note="GO_function: GO:0000287 - magnesium ion binding [Evidence IEA]; GO_function: GO:0004743 - pyruvate kinase activity [Evidence IEA]; GO_function: GO:0030955 - potassium ion binding [Evidence IEA]; GO_process: GO:0006096 - glycolysis [Evidence IEA]" /codon_start=1 /product="Pyruvate kinase isozyme G, chloroplastic" /protein_id="KHN12918.1" /db_xref="InterPro:IPR001697" /db_xref="InterPro:IPR015793" /db_xref="InterPro:IPR015795" /db_xref="InterPro:IPR018209" /db_xref="UniProtKB/Swiss-Prot:Q40546" /db_xref="UniProtKB/TrEMBL:G7IDV6" /translation="MSQVVATRSIHSSLTRPTSGSAHHRAQTLLKPPTFASKLFGAQR NNPSKVCSRSCLVNARKSAPTEVVPVSPEDDSKIEEELQHLRGMQQLGDTSVGMWSKP TFRRKTKVVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKIIDLVKEYNAQ SKDNVIAIMLDTKGPEVRSGDLPQPINLTTGQEFTFTIRRGVGTADCVSVNYDDFVND VDVGDMLLVDGGMMSLVVKSKTEDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKD WDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCDADIHVIVKIESADSIPNLHSI ITASDGAMVARGDLGAELPIEEVPLLQEEIITICRSMGKAVIVATNMLESMIVHPTPT RAEVSDIAIAVREGSDAIMLSGETAHGKFPLKAVKVMHTVALRTEATIPGGQMPPNIG QVFKNHMSEMFAYHATMMSNTLGTSTVVFTRSGFMAILLSHYRPSGTIFAFTDQKRIQ QRLALYQGVCPIYMEFSEDAEETFTRALDLLQKQGMVKSGEEVALVQSGTQPIWRFQS THNIQVRTV" gene 8782..18010 /locus_tag="glysoja_042177" mRNA join(8782..8884,9002..9154,9251..9410,9518..9836, 10063..10200,10366..10555,10665..10795,11513..11725, 12107..12273,12773..12851,13254..13775,13875..14245, 14469..14543,14616..14720,15513..15581,15770..15994, 16235..16345,16943..17059,17851..18010) /locus_tag="glysoja_042177" /product="Protein timeless like" CDS join(8782..8884,9002..9154,9251..9410,9518..9836, 10063..10200,10366..10555,10665..10795,11513..11725, 12107..12273,12773..12851,13254..13775,13875..14245, 14469..14543,14616..14720,15513..15581,15770..15994, 16235..16345,16943..17059,17851..18010) /locus_tag="glysoja_042177" /codon_start=1 /product="Protein timeless like" /protein_id="KHN12919.1" /db_xref="InterPro:IPR006906" /db_xref="InterPro:IPR007725" /db_xref="UniProtKB/Swiss-Prot:Q9UNS1" /db_xref="UniProtKB/TrEMBL:G7IDV7" /translation="MDTEGLSVICAGIGTIEVDDEGNVIGYIKGQYCLDNLKDLLRFL RRDDPQTRDVFKQVCKWNIVSKYLIPTIELYHEDSNLLLNAVKVLVFLTMPIEPSSTD ISQQLEYLWGLKSALTNSDVAAVIVSFLERPLENLERGTFSEDDWKLVQLVLTLFRNI LAVQEIPTHQKSGGLATQLLSMRDRFLELLFRENVMDIMLVISQCVGSSNVYLRQDNL LLLEIFHYILMGQDPELIVRAHLKESKEDEQPQTSLNSLQFILEEEKKRRNICKLNNL SRHSQFSPTFARLTMDGSKAVIKGNPNSSHNVLLKAQNVTRGPTKRTVWDHPRLPSTE DKILELLHGFVNQFLSGGYNVLMRSIREDIEKEHPSIQKSDVVVFFQVAEFVTSFQCY KYSASKTTEGGDTFETFSHKDADTSDFSGQICGPIAASLNESMFQLVISKWRHAYDGL KETNDYQFLSAAGSLLKNMIRMLDLILKLLPEDSKEPQTARILLYKLFYDQTEEGMTQ FLLNLIKTFDTHKQPKSDLSDLVEIIHKVVKLMDNLQSRGALRVSRKSRKVKKKIIPE ETESGDKLAGDHSFIQNETGISTVNQSAENQPLQEGLPNANSTGEDVIPNDNEHENHV EEVGNSQVGLEPMGATNSEHVNEDMLDGTNDFSEDEQLHAYNEVDFKVSTLVSAFANH NIIQKLCWLLKFYKSNSLATNHYIISMLRRISDDLELHPMLYQLSLLTTFYDILVEQK SCPCKDYAGIVDFLTCLVRKMLKKMKKQPLLFVELLFWKTRRECHYINAEYLLSELGH LKKESANWNNTQGDEEIGSSPAKVWTRRSIADALGEDEADVVITHDSGYQKDKLDDVI KGFALPLAVTVTKMIISTGEQLMEDESQIALRRRKKLVLDGDLERQIKDLHEKQKKKR VQAFNKDQEALIKVLYEQFKDHRRCSYMIANALDKDGKFTTAQVSRKLKQLGLYLPLP KDGKFTTAQGVLLLDRSNERMDESDDETLVSLVKRKKMESGKLSRGQLHGQTSEDKLS KGDSDDEMLSSVLKRTRRPSLKSKQVELENIQIHERIMGDDSFNGRITEVSEGEYRVD SMNSSQVEYQQMDDLADLEDEVAVSAVPDNARSRRKLRMVIDPEDDD" assembly_gap 19376..19728 /estimated_length=353 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(22741..29569) /locus_tag="glysoja_042178" mRNA complement(join(22741..22876,23050..23161,23804..23846, 24805..24927,25396..25504,25580..25655,25941..26003, 26479..26573,26672..26774,27142..27236,27345..27403, 28210..28460,28537..28695,28779..28902,28979..29569)) /locus_tag="glysoja_042178" /product="WD repeat-containing protein 91 like" CDS complement(join(22742..22876,23050..23161,23804..23846, 24805..24927,25396..25504,25580..25655,25941..26003, 26479..26573,26672..26774,27142..27236,27345..27403, 28210..28460,28537..28695,28779..28902,28979..29369)) /locus_tag="glysoja_042178" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="WD repeat-containing protein 91 like" /protein_id="KHN12920.1" /db_xref="InterPro:IPR001680" /db_xref="InterPro:IPR017986" /db_xref="InterPro:IPR019775" /db_xref="UniProtKB/Swiss-Prot:Q55FJ2" /db_xref="UniProtKB/TrEMBL:E0CUP1" /translation="MEKMQHAEELVREFLVFRGFTNTLESYEAELRTDIGKGFEVDKI LDLIFSLHVPKFHADSLLALLAFFKHYLSSSSDAPLASTLSKLETSLLRFYVVHAVQC NRNDKVVDFFTLYGAELLQRSQDWTNWFAIPYKKNPHLDPEFRVFFSKEWYQALHLSS RNFFSEVFNATHLNAVSRLPALLKVSSEMNATNLLKRDIVHLNLKLSQLQASLDEKEV QLRQFRSMEGGSTGSSSTLREKTARMSKDSPEVFPAGVARVGLTESSQDSVAGGLGNI HSELIGSTSGDDSAFLSNDHLRNGGADNAGVKENDGEVYGEEYFSEVQVEHQETFLGH TSPISRCRFSASGNNIASASLDGTVRIWTYDTSTPVSRNATIYCSTEILSLDWECKSD RLLLIGTSDGCIKAWNVDAKRVVCDLNTTEAFPSVLDIKCSPVEPIFVSAAASGGAGS NYIDHLGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMF VEDMSAGLQITGWPAHDSSISSILFGPDETSIFSLGCDGKAKNPKLGLTLLVLVVRFC YPLNDSKYCRHEMALDANGRRLLVTSSSFRAPIYQVHGHLSGWRTLPHGAPITAVDWH PTLPIFLTGSADNSVRVTSLS" gene complement(32349..37334) /locus_tag="glysoja_042179" mRNA complement(join(32349..32687,33285..33738,33981..34161, 34261..35618,37075..37334)) /locus_tag="glysoja_042179" /product="G-type lectin S-receptor-like serine/threonine-protein kinase" CDS complement(join(32349..32687,33285..33738,33981..34161, 34261..35618,37075..37334)) /locus_tag="glysoja_042179" /EC_number="2.7.10.1" /note="GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO_function: GO:0004713 - protein tyrosine kinase activity [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0005529 - sugar binding [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0048544 - recognition of pollen [Evidence IEA]" /codon_start=1 /product="G-type lectin S-receptor-like serine/threonine-protein kinase" /protein_id="KHN12921.1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR000858" /db_xref="InterPro:IPR001480" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR020635" /db_xref="UniProtKB/Swiss-Prot:Q9FLV4" /db_xref="UniProtKB/TrEMBL:G7IDW1" /translation="MANADSSLICYFWVILALGLCCFSGCISGQIGLGSRLLAREAQT WVSENGTFALGFTPAETDNRLFVIGIWFARLPGDRTLVWSPNRDNPVSQEAALELDTT GNLVLMDGHMTMWTSNTSGADVQTAIMAETGNFILHNSNNHSVWQSFSQPSDTLLPNQ LLTVSSELTSSKSSSQGGYYSLKMLQQPTSLSLALTYNLPETYQASDESYTNYSYWQG PDISNVTGEVIVVLDQAGSFGIVYGDSSDGAVYVYKNDGDDAGLSSAVHQSAPLTVLR RLTLEKNGNLRLYRWDEVNGSRQWVPQWAAVSNPCDIAGVCGNGVCNLDRSKTKATCT CLPGTSKVGRDGQCFENSSLVGNCNGKHENLTSQFRISAVQQTNYYFSEFSVITNYSD ISNVSKCGDACLSDCDCVASVYGLNEERPFCWVLRSLSFGGFEDTSSTLFVKVRANGS WTSEGQAGGSNSSSDGMGSAKEKAVIIPTVLSMVVLIVLLSLLLYFSVHRKRTLKREM ESSFILSGAPMSFTYRNLQIRTCNFSQLLGTGEFGSVYKGSLRDGTLVAVKKLDRVLP HGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPSYQGRD RLLDWTTRFNIAIATAQGIAYFHEQCRDRIIHCDIKPENILVDENFCPKVSDFGLAKL MGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIIGGRRNLDMSFGA EDFFYPGWAYKEMTNGSIIKVADRRLNGAVDEEELTRALKVAFWCIQDEVSMRPTMGE VVRLLEDSIDINMPPMPQTVVELIEEGLDHVYKAMKREYNQSSSFTLTSHLTSQATCS NSTMSPR" gene 40199..45874 /locus_tag="glysoja_042180" mRNA join(40199..40321,40548..40700,41658..41726,43869..43934, 44919..45874) /locus_tag="glysoja_042180" /product="hypothetical protein" CDS join(40199..40321,40548..40700,41658..41726,43869..43934, 44919..45587) /locus_tag="glysoja_042180" /codon_start=1 /product="hypothetical protein" /protein_id="KHN12922.1" /translation="MSTTISSLPFSLPLRQNSRVTLFNPPSSPNPSQSSVTFPKKKWR LLWFRHGNTSSKTDGSELNEDKLSEDLVKLEGVQSKDLKKDWLATILTHSLNYWLRGT SNLLRRRRHREEEVITVIRGVEPWTVPWTAKTIVQVMLLWIASFWFVGSWIVPFLAYT AGFRKESLTYRGQALCSLLTDVAEGVVGIAILRHCLAKFQPLSSDWFKFEVKGKWQFD VGLGCLMFPLINQLSQMNLNLLPVLQYTPVTISSVEQSIVARDPVAMALYAVVVSVCA PIWEEIVFRGFLLPSLTKYMPVWSAILVSSIAFALAHFNIQRMLPLVFLGMVMGTVFV RSRNLFPSMLLHSLWNAFVFLDLMK" gene 49773..51311 /locus_tag="glysoja_042181" mRNA join(49773..50699,50818..51311) /locus_tag="glysoja_042181" /product="Putative membrane-associated kinase regulator 6" CDS join(50042..50699,50818..50825) /locus_tag="glysoja_042181" /codon_start=1 /product="Putative membrane-associated kinase regulator 6" /protein_id="KHN12923.1" /db_xref="UniProtKB/Swiss-Prot:Q84JK8" /db_xref="UniProtKB/TrEMBL:C6TDS3" /translation="METSQPLSIESFSYSWLVNLRPSSLESLESSLRTSLDASDEASF IEMDPRMPPSKRFFKNSQDSKFDFPISQSPLTLVHADELFSNGYLMPLFVESLQMEEY ESSDSNTSLVSSSSHAPTSEAPTGPSRCLSLKRCRTLSRRVFQKYLNFLRPLCRKLRV HKSSTEAVAKRGEAVKNRRYYSDTTSPRTSVAFSADDWRYSCDSESSIYEAVLHCKRS IGE" assembly_gap 52550..52601 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 54499..54620 /estimated_length=122 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 65722..73094 /locus_tag="glysoja_042182" mRNA join(65722..65939,67634..67752,67846..67934,68016..68051, 68357..68450,68797..68916,69376..69440,69779..70275, 70356..70422,70505..71091,71509..71644,71722..71790, 71902..72024,72119..72247,72654..73094) /locus_tag="glysoja_042182" /product="Fidgetin-like protein 1" CDS join(65722..65939,67634..67752,67846..67934,68016..68051, 68357..68450,68797..68916,69376..69440,69779..70275, 70356..70422,70505..71091,71509..71644,71722..71790, 71902..72024,72119..72247,72654..72767) /locus_tag="glysoja_042182" /EC_number="3.6.4.3" /note="GO_function: GO:0000166 - nucleotide binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]" /codon_start=1 /product="Fidgetin-like protein 1" /protein_id="KHN12924.1" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR003959" /db_xref="InterPro:IPR003960" /db_xref="UniProtKB/Swiss-Prot:Q60QD1" /db_xref="UniProtKB/TrEMBL:B9RIQ4" /translation="MEQKHVLFSALSVGVGLGVGLGLSTGQAVQKWVVGSCESDEISG EQIVLELNNRVIDGKNSKVTFDDFPYYLSERIRFVLTSTGYVYLKQDFSKHLRNLRPA SRAILLSGPAEPYQQNLARALAHYFESKLLLLDITDFSLEMQRKYGCPRKEPCFQRSI SEVTLERVSGLFGSLSVLPSTGRTRGTLHRQSSGIENSSNPPKLRRNASTACDTISTP QYGPSDPAPLKCTSGFCFDEKLFVQSLYKVLVSISETSSVILYIKDVEKLFVRSTRLH NLFQKLIKKLSGSVLILGSQIFDSEDDCAEIDEKLTMLFPYNIDIKPPQDETHLASWR TKLKKDMETSLFQDSRNHIAEVLAANDVDCDDLEKVSNADTMLLSNCIEEIVASAISH HLMETKHPEYRNRKLVISHKSLSHVLNLFQESESNPENKDSNKEDALATKKDGDNEFE KHMREEVVPANEIGVTFEDIGALDDIKELLQDVVMLPLRRPDLFKGGLLKPYKGILLF GPPGTGKTMLAKAIANEAGASFINVSISKITSKWFGEDEKNVRALFSLAAKVAPTIIF IDEVDSMLGKRTKYGEHEAMRKIKNEFMAHWDGLLTEPNERILVLAATNRPFDLDEAI IRRFERRIMVGLPSAENREMILKTILAKEKYENIDFKELSTMTEGYTGSDLKNLCTAA AYRPVREVLQQDRLKEKEKKKTEVEVQRSEDASDAKGDKDEVTTLRCLNVEDIRHCSQ EKKKTEAEVQSSQNASDAKGDKDDQVMTLRPLNMEDMRLAKSQVAASFAAEGSIMSEL KEWNELFGEGGSRKKQQLTYFL" gene <73432..75350 /locus_tag="glysoja_042183" mRNA join(<73432..73583,74624..74754,74878..74965,75140..75350) /locus_tag="glysoja_042183" /product="F-box protein" CDS join(<73432..73583,74624..74754,74878..74965,75140..75350) /locus_tag="glysoja_042183" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="F-box protein" /protein_id="KHN12925.1" /db_xref="InterPro:IPR001810" /db_xref="UniProtKB/Swiss-Prot:Q9FLX3" /db_xref="UniProtKB/TrEMBL:C6T8P6" /translation="PIRESLLKTYRYPIACRELSFILREAFHQFPKNLQSIVFQDTLS AFRLLPQIQTQSAVSAVHSLLQSVEAALPKQKKNVAVTKFKHAMVVHKRRCSLQLPQD ILAHIFSFLEMKSLVSMGLVCWSWNIAANDNHLWEKQYVALYGNRAKPKPAKLIEGKN DGLLLEPVDTRIITDWKESVKGAYTCKLNVEEM" gene complement(83387..86227) /locus_tag="glysoja_042184" mRNA complement(join(83387..83845,83965..84034,84288..84429, 84629..84809,85897..86227)) /locus_tag="glysoja_042184" /product="Reticulon-like protein B1" CDS complement(join(83685..83845,83965..84034,84288..84429, 84629..84809,85897..86098)) /locus_tag="glysoja_042184" /EC_number="2.7.1.26" /note="GO_component: GO:0005783 - endoplasmic reticulum [Evidence IEA]" /codon_start=1 /product="Reticulon-like protein B1" /protein_id="KHN12926.1" /db_xref="InterPro:IPR003388" /db_xref="UniProtKB/Swiss-Prot:Q9SUR3" /db_xref="UniProtKB/TrEMBL:G7IDX1" /translation="MASGDTDSFSDKVEENFHHHNNSDSDSYSDSDDDHNKRPPPKTT GSTNVYRLFGRDQPVHKVLGGGKPADILLWRSRRSTGIVLGAGTAFWIFFELMQYHLI TFICHLLIVSLAALFLWSNASVFIHKSPLHIPHVALPEECVHQVASALTIEINRAFVV VREIGTGKDLKKFLSVIAVLWVISVIGSWFNFMTLFYLFFVSLFTLPLLYEKYEDQVD ALGEKAMIEIKKQYAVFDAKVLSQIPIAGFKKD" gene 91857..93496 /locus_tag="glysoja_042185" mRNA join(91857..93011,93117..93496) /locus_tag="glysoja_042185" /product="Putative membrane-associated kinase regulator 5" CDS join(92084..93011,93117..93175) /locus_tag="glysoja_042185" /codon_start=1 /product="Putative membrane-associated kinase regulator 5" /protein_id="KHN12927.1" /db_xref="UniProtKB/Swiss-Prot:Q9FLX4" /db_xref="UniProtKB/TrEMBL:G7IDX6" /translation="MDALNFLKFWRNATTTTTSEPHLVVETDTESDEEDSFFDLELTL HDFHNKENTTTTKIDDDPKQTTTTTTTELKSICSKDDELSKIDNDVPRKTPLPMSSPP EPISKRKVLPIEPISKPQSPIALLRSAPSFRIFMFRKRNRAPPQKTEHSVNETKVFAV KLSVDDFRSSPALSRDNSTRSLRSKVRGLSYEEPKPERFSKEVLRKYLKLIKPLYVKV SKRYSDKVRFSGEGFATSPSSSPSVASVSSRTEKQGKGMTVVSKHLGKSRSASSTVVG VGSPAKRSDDTLQQQLDGIQSAILHCKRSFNSREGSMYSVRKSFDGERGAKV" assembly_gap 102380..104833 /estimated_length=2454 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene 105614..106758 /locus_tag="glysoja_042186" mRNA 105614..106758 /locus_tag="glysoja_042186" /product="ABC transporter G family member 8" CDS 105614..106597 /locus_tag="glysoja_042186" /note="GO_component: GO:0016020 - membrane [Evidence IEA]" /codon_start=1 /product="ABC transporter G family member 8" /protein_id="KHN12928.1" /db_xref="InterPro:IPR013525" /db_xref="UniProtKB/Swiss-Prot:Q9FLX5" /db_xref="UniProtKB/TrEMBL:G7IDX8" /translation="MEILSQLNEVKPVTPPSIPESPQSSISTSSVSEGGARSSREIIR YRSSRVHEIFTLYSRFWKIIYRTRQLLLTNTAEALLVGLVLGTIYINIGFDKEGIEKR FGLFAFTLTFLLSSTTETLPIFINERPILLRETSSGVYRLSSYLIANTLVFLPYLFVI AVIYSIPVYFLVGLCASWLSFAYFVLVIWVIVLMANSFALFLSSLAPNYIAGTSLLTV LLAAFFLFSGYFISKESLPKYWLFMHFFSMYKYALDALLINEYSCLVSRCLIWYQENE QCMVTGGDVLQKKGLKESERWTNVYFLLGFFVLYRVLCFLVLARRVSRSKT" assembly_gap 109220..109229 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(111248..116235) /locus_tag="glysoja_042187" mRNA complement(join(111248..111657,112181..112314, 112565..112755,113149..113321,114065..114366, 114678..115132,115282..115395,115488..115799, 115983..116103,116183..116235)) /locus_tag="glysoja_042187" /product="SPX domain-containing membrane protein" CDS complement(join(111419..111657,112181..112314, 112565..112755,113149..113321,114065..114366, 114678..115132,115282..115395,115488..115799, 115983..116103,116183..116235)) /locus_tag="glysoja_042187" /note="GO_component: GO:0016021 - integral to membrane [Evidence IEA]; GO_process: GO:0055085 - transmembrane transport [Evidence IEA]" /codon_start=1 /product="SPX domain-containing membrane protein" /protein_id="KHN12929.1" /db_xref="InterPro:IPR004331" /db_xref="InterPro:IPR011701" /db_xref="UniProtKB/Swiss-Prot:Q93ZQ5" /db_xref="UniProtKB/TrEMBL:D7TW83" /translation="MVAFGKKLKERQIQEWQRYYINYKLMKKRVKQYAQQIQLGTLDR RHVLKDFSRMLDNQIEKTVLFLLEQQGLLASRIAKLGEDHEVIQQEPHISRIAELREA YRAVGQELLKLLFFVEVNAVGLRKILKKFDKRFGYKFTDYYVKTRANHPYSQLQQVFK HVGFGAVVGALSRNLHELQENQESQGSFLSIYDQPTLPLQDPVIDSIRAAIDRLSNST NFLNFLGQHALIMHEELPAPVDEHVDDQRYHFMSLFLNLANTFLYMVNTYIIVPTADD YSMSLGAAPTVCGIVIGAMAVAQVFSSVYFSAWSNKSYFRPLVFSSIVLFLGNVMYAL AYDLNSIWILIIGRLLCGFGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGP ALAGLLQTKFKIFNITFNQDTLPGWVMTIAWLIYLVWLWITFKEPYREIEENHVPHQS NAENNALEKGINQPLLTSLKDKVDEDDDQDYDDSEEAPEDSRQPANSIGAAYRLLTPS VKVQLLIYFMLKYAMEILLSESSVITTYYFNWTTSTVSIFLACLGLTVLPVNIIVGSY ISNMFEDRQILLASEVMVFVGILFSFHVIFPYTEPQYICSGLLMFVSAEVLEGVNLSL LSRVMSSRLSRGTYNGGLLSTEAGTLARVIADATITLAGYGGVSRLLNVTLFPSFFIC VASIIATCYTYNSLY" gene 127552..130217 /locus_tag="glysoja_042188" mRNA join(127552..127884,128718..130217) /locus_tag="glysoja_042188" /product="Pentatricopeptide repeat-containing protein, chloroplastic" CDS join(127552..127884,128718..130217) /locus_tag="glysoja_042188" /EC_number="3.4.24.-" /EC_number="3.6.4.3" /note="bifunctional" /codon_start=1 /product="Pentatricopeptide repeat-containing protein, chloroplastic" /protein_id="KHN12930.1" /db_xref="InterPro:IPR002885" /db_xref="UniProtKB/Swiss-Prot:Q9FLX6" /db_xref="UniProtKB/TrEMBL:G7IDY0" /translation="MKLLLTTRVSPHNSNVVESRCYVVKQFLTLFLHGASENCNSQSL KEGACVHCPIIKVGLQHDLYLNNNLLSLYAKCFGVRHARHFFDEMPHRDVVSWTTLLS AHTRNKHHFKLFRGIALPNVISWTSLIAGFAEHGLVEESFWLFAEMQAAEVQPNSFTL STILGNLLLTKKLHGHIIKSKADIDMAVGNALVDAYAGGGMTDEAWAVIGMMNHRDII TNTTLAARLNQQGDHQMALKVITHICNDEVKMDEFSLASFISAAAGLGTMETGKLLHC YSFKSGFGRCNLASNSLVHLYSKCGSMFNACRAFKDITEPDTVSWNVLISGLASNGHI SEALSAFDDMRLARVKLDSFTFLSLIFACSQGSLLNLGLDYFYSMEKTYHITPKLDHH VCLVDLLSRGGRLEEAMGVIETMPFKPDSVIYKTLLNACNAHGNVPPEEDMARRCIVE LDPCDPAIYLLLASLYDNAGLSVFSDKILKLMRERGLRSRPRQCWMEVKSKIYLFSGR EKIGKNEINEKLEFLITEIKNKGYPYQENEDKLYHSEQLALVFGVLSVPTSAPIRKNK NSLICTHCHSFIMLVTQFVDREIIVRDRKRFHFFKDGQCSCRGH" gene complement(132060..134070) /locus_tag="glysoja_042189" mRNA complement(join(132060..132965,133110..133223, 133322..134070)) /locus_tag="glysoja_042189" /product="Putative WRKY transcription factor 27" CDS complement(join(132611..132965,133110..133223, 133322..133818)) /locus_tag="glysoja_042189" /note="GO_function: GO:0003700 - sequence-specific DNA binding transcription factor activity [Evidence IEA]; GO_function: GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]" /codon_start=1 /product="Putative WRKY transcription factor 27" /protein_id="KHN12931.1" /db_xref="InterPro:IPR003657" /db_xref="UniProtKB/Swiss-Prot:Q9FLX8" /db_xref="UniProtKB/TrEMBL:G7IDY1" /translation="MAEDWDLFAIVRSCQSATTTIPQTTTNNTSSPLITSTVKEENYD GFSFPNIVQPITNEFQALHQLFTPFNPTTNTTNTSASGINPNSPYFAEQESQQISEHL PIWPHFVPEHSSTPSFSRFHDHQQQQQQINQLQALQKHEFQLPQNNSPTVSPNAQPQT PKSRKRKSQQKKMVCHVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCMAR KQVERSNTEPDMFIVTYSGDHSHPRPTHRNSLAGSTRNKIPATNPLPSPGSLSSFQAT PFSSSSSSPPHSPTSPSEEPPETGDLEPDPDMETDGDDDGDIQIQ" gene complement(146198..147725) /locus_tag="glysoja_042190" mRNA complement(146198..147725) /locus_tag="glysoja_042190" /product="Hypothetical protein" CDS complement(146611..147633) /locus_tag="glysoja_042190" /codon_start=1 /product="Hypothetical protein" /protein_id="KHN12932.1" /translation="MATTTANKDEIISTIASSSSPVFISTETLCTILTHHTLMNHFQS TLPKASTILQTPIRQHHSLSPSSSLLLMPSWSSSSSLPYIGVKLVTHFPQNSSLNLPG VQGSYVLFSSTTGQTLASMDSTELTLYRTSCVSGLASKYLARHDSEILVMVGAGSLAP HLIKAHLSAIPSLRKVIIWNRTVEKATTLANKLSQSGEFGGVRFEGCGCLDEVVGFGD IVSCATNSETPLVKGERLKGGAHLDLVGSFKNSMMECDDEAIRRGKVFVDNETALVEA GELVGAFERGVIKKDEIGGSLVELVRGEKVGRISSEQITVFKSVGSAVVDMLAAQLVY ETYTRS" gene complement(149358..150445) /locus_tag="glysoja_042191" mRNA complement(149358..150445) /locus_tag="glysoja_042191" /product="hypothetical protein" CDS complement(149565..150287) /locus_tag="glysoja_042191" /codon_start=1 /product="hypothetical protein" /protein_id="KHN12933.1" /translation="MGNCFFGAMSDPDAAAIKVITSNGGIMEFSAPVTVSFITNEFPG HAMFRSHDLFWKPLSQFDELEPGQSYYLLPLSNNNNNNNNNNSKNTDSTLPCGGENIN VVVRQGHVRSHSVPTISNPALYRMSLDYHHHHQGMGLLKRSSNNIDAFSSRSSGVVNS SNNIGGGGSGGSSRFWKVKLVISPEQLLDILAQEARTKELIESVRMVAKCGIAGGAIS NSAAGMISDHWSLSSTSWSISS" gene complement(155005..155577) /locus_tag="glysoja_042192" mRNA complement(join(155005..155451,155553..155577)) /locus_tag="glysoja_042192" /product="hypothetical protein" CDS complement(join(155138..155451,155553..155577)) /locus_tag="glysoja_042192" /codon_start=1 /product="hypothetical protein" /protein_id="KHN12934.1" /translation="MKIVSNLSGVESVSMDMKDQKLTLIGDVDPVVAVEKLRKLCDTR IVSVGPAKEENEGKNNEVEAAENQNQNNLADSVNIYEAYHIHNQYQMRQHHYCCTSVE ENPNDACVIC" gene complement(156843..157954) /locus_tag="glysoja_042193" mRNA complement(156843..157954) /locus_tag="glysoja_042193" /product="hypothetical protein" CDS complement(157122..157304) /locus_tag="glysoja_042193" /codon_start=1 /product="hypothetical protein" /protein_id="KHN12935.1" /translation="MKDQKLTLIEDIDPAVVVDKLRELCHTDILSIGPPRKRTKMRTR ITIKIRTWLILWRSMR" gene 165288..171177 /locus_tag="glysoja_042194" mRNA join(165288..165568,167442..167499,168527..168650, 168732..168902,169033..169143,169513..169622, 169876..169935,170280..171177) /locus_tag="glysoja_042194" /product="Transcription factor ASG4" CDS join(165354..165568,167442..167499,168527..168650, 168732..168902,169033..169143,169513..169622, 169876..169935,170280..170351) /locus_tag="glysoja_042194" /note="GO_function: GO:0003677 - DNA binding [Evidence IEA]" /codon_start=1 /product="Transcription factor ASG4" /protein_id="KHN12936.1" /db_xref="InterPro:IPR001005" /db_xref="InterPro:IPR017930" /db_xref="UniProtKB/Swiss-Prot:Q6R0H0" /db_xref="UniProtKB/TrEMBL:C6T715" /translation="MVSKNPNPSEAFYLDPSGMSLPGILPFAAAATATADSFEDPAKK TRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLK VQKSGTNEHLPPPRPKRKAAHPYPQKASKTAPVLSQVSGSFQSSSALLEPGYILKHDS SAMPKTPIINTAVSSWSNNSLQKTTSVLHGQKQKVNNCCSSSRSPRAQLVGESNGQRN NSHPLRGKVLPDFAEVYSFIGSVFDPNVTGHVQKLKRMDPIDVETVLLLMRNLSINLA SPDFEDHRRLLASYEVEPEVDKYKCRLNHA" gene complement(171388..177649) /locus_tag="glysoja_042195" mRNA complement(join(171388..171448,171544..172599, 172680..172830,176873..177142,177382..177452, 177558..177649)) /locus_tag="glysoja_042195" /product="Putative polygalacturonase" CDS complement(join(171388..171448,171544..172599, 172680..172830,176873..177142,177382..177452, 177558..177649)) /locus_tag="glysoja_042195" /EC_number="3.2.1.15" /note="GO_function: GO:0004650 - polygalacturonase activity [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]" /codon_start=1 /product="Putative polygalacturonase" /protein_id="KHN12937.1" /db_xref="InterPro:IPR000743" /db_xref="UniProtKB/Swiss-Prot:A7PZL3" /db_xref="UniProtKB/TrEMBL:C6T824" /translation="MIEIMFSDQIQISNLTLVNSPSWFVHPIYSSNITIKGLTILAPV DSPNTDGIDPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIKFGKPTQHLVIRRLTCI SPDSAVIALGSEMSGGIQDVRVEDIIAISTQSTVRIKTAVGRGNNGLIDGQGAYWWNK FHQGQLTLTRPYLIETMYSDQIQISFLTLVNSPTWFAHVMESLKKSMPPSFLSKENCG NHKKNHCEVAHEQGFMELQLSNTPVSVYDSPGRISTSDPSEAYISPTSVEKAKQFVSM IDDCESSSTVYCKGISVRMKQNPPCPADFQIHRELESKSFSCSFDGESNSSFELCLPD EDSLITLDELFLMPDAENLVMFDSSVSSSAESNLIEADVFSPSSPREMVEKLVEFILN DEISTPHVDNPIVHHGAGLGRFSHSMHAQQTPLKFCSNQLNPERDPQDHNKFQRNSID SAIYSFFSHPFPSNTFSQPFPLYHDELKRFDHEVSQSMLQQIINPGKLNLCSLQSGVT PHLPALQMASCTQAKSNADSSLCISGTKELWGFCKTKSRVIAASIQLKLIISLKRNCE " gene 179760..182496 /locus_tag="glysoja_042196" mRNA join(179760..180384,180472..180531,180614..180685, 180850..180984,181118..181243,181389..181445, 182169..182496) /locus_tag="glysoja_042196" /product="Beta-carotene 3-hydroxylase, chloroplastic" CDS join(180001..180384,180472..180531,180614..180685, 180850..180984,181118..181243,181389..181445, 182169..182240) /locus_tag="glysoja_042196" /EC_number="1.14.13.-" /note="GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_process: GO:0006633 - fatty acid biosynthetic process [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]" /codon_start=1 /product="Beta-carotene 3-hydroxylase, chloroplastic" /protein_id="KHN12938.1" /db_xref="InterPro:IPR006694" /db_xref="UniProtKB/Swiss-Prot:B3SGL0" /db_xref="UniProtKB/TrEMBL:G4Y9K0" /translation="MAAGLSTAANLKPYNLLQPPIPISKPTPTLFFNPLRCFRRSTIL RVRPRRRRMSGFTVCVLTEDPKQTKKDEQEEQVNPQVVSARVAEKLARKKSQRFTYLV AAVMSSFGITSMAVFAVYYRFSWQMEGGDVPWSEMLGTFSLSVGAAVAMEFWARWAHR ALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIVLLSYGFFHKGLVPGLCFGAG LGITVFGMAYMFVHDGLVHKRFPVGPIANVPYFRRVAAAHQLHHSDKFNGVPYGLFLG PKEVEEVGGLEELEKEISRRMRSGS" gene 186777..189490 /locus_tag="glysoja_042197" mRNA 186777..189490 /locus_tag="glysoja_042197" /product="hypothetical protein" CDS 188583..189149 /locus_tag="glysoja_042197" /codon_start=1 /product="hypothetical protein" /protein_id="KHN12939.1" /translation="MDNMACNKGQHVRKAKKKQVKDKLDRLKQAEKKKRRLEKALATS AAIISELEKKKQKKKEEQQRLNEEGAAIAEAVALHVLLGEDSDDSCNVVLNDSGCKTW NYNHKLGLYMGERTACFPHLDGGTWSVSAESGKWSFTSGPLEKNVYEPLYEEARWGPT GFSVDLIAAQAARSLHIAKDADEARIIF" gene 191034..195566 /locus_tag="glysoja_042198" mRNA join(191034..191413,192180..192247,192344..192484, 193682..193723,194366..194487,195037..195174, 195251..195566) /locus_tag="glysoja_042198" /product="hypothetical protein" CDS join(191337..191413,192180..192247,192344..192484, 193682..193723,194366..194487,195037..195174, 195251..195379) /locus_tag="glysoja_042198" /codon_start=1 /product="hypothetical protein" /protein_id="KHN12940.1" /translation="MESREGKSISDLEEEFFHKFRDFMTGITKIDELGIAGSKLLSGF QQALEFIRRPPIDMNSKLVHKIIVANETERVKAYINSGCRKLNESIQSVTNLHSCTHG LCNHISKAKEILNELEGLLGDVTNAIQTTDGNLLALSDLDFDVELNEPEEKDALSRSQ SPDVTTTKKKKSIDVPHLAMVMAFIYSMVKQDYLMQEKIVSALDVKMPSEELESYCQM WSLRPFINDEIVHQAWEHIH" gene complement(198653..201227) /locus_tag="glysoja_042199" mRNA complement(198653..201227) /locus_tag="glysoja_042199" /product="Putative receptor-like protein kinase" CDS complement(198859..201039) /locus_tag="glysoja_042199" /EC_number="2.7.11.1" /note="GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO_function: GO:0004713 - protein tyrosine kinase activity [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]" /codon_start=1 /product="Putative receptor-like protein kinase" /protein_id="KHN12941.1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR017441" /db_xref="InterPro:IPR020635" /db_xref="InterPro:IPR024788" /db_xref="UniProtKB/Swiss-Prot:Q9FLW0" /db_xref="UniProtKB/TrEMBL:G7IE06" /translation="MKKNGTHLVRFHFSPFKAQSFDLKSAKFNVSVNGVSVLSNFQPP NDVLLKEFILKIVSNVLEILFRPVGDSGFAFVNALEVFTAPVDFVIDFGARLVGPSGV EEYRNLSSQVLETVHRINVGGLKITPFNDTLWRTWIPDEDYLVFKGAAKPAVSTHTPN YQKGGATREVAPENVYMTAQQMNRENSSLASRFNITWNFPVSPGGVPHLVRLHFCDIV SPALNLLYFDVYINGYIAYKDLDLSALTIHTLASPVYVDFVTNSDDTGFVQVSVGPSE LSSSIRMNAILNGAEIMKMVNDVGTNVVHRRKNLWVLVGSIAGGIVVLFLVVTAFLLG TKCRNKKPKQRTVESVGWTPLSMFGGSSLSRSSEPGSHGLLGMKIPFAEIQSATNNFD RNLIIGSGGFGMVYKGELRDNVKVAVKRGMPGSRQGLPEFQTEITVLSKIRHRHLVSL VGFCEENSEMILVYEYVEKGPLKKHLYGSSLQTPLSWKQRLEICIGAARGLHYLHTGF AQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPCINETHVSTNVKGSFGYLDPEYYR RQQLTDKSDVYSFGVVLFEVLCGRPAVDPQLAREQVNLAEWALEWLQKGMLEQIVDPH LVGQIQQSSLKKFCETAEKCLAEYGVDRPAMGDVLWNLEYALQLQESEPHANSSARES VSVTNAVIPGNPSTNRRTERDYYNCSSDVSTSQVFSQLMNNEGR" gene complement(214168..216188) /locus_tag="glysoja_042200" mRNA complement(join(214168..214590,214673..214722, 214969..215430,215530..216188)) /locus_tag="glysoja_042200" /product="hypothetical protein" CDS complement(join(214399..214590,214673..214722, 214969..215430,215530..215587)) /locus_tag="glysoja_042200" /codon_start=1 /product="hypothetical protein" /protein_id="KHN12942.1" /translation="MATRTGRLFQNQNLNVHVNGGGTVSEKADLTGQRKVRAGGRKPL GDLSNAGNLINHFDGKKGLDGSLYTGKPSVSQAQAPKLHKSKNLESDKRIPASEKSLT RSRKALSDISNSGKPQVPEIKNKKTLKPLEESLPPSAISEEQILHDHKKCIKSQFETA DVHQFFKTVGLEDDDHMAISFELSGISKQKSESAYLELEEVPEWLPEVHSLSVLHGGS PAVHCKTPGLSSYRTMWNDSTVNFKLIETPKLSKK" assembly_gap 223869..224209 /estimated_length=341 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 224410..224433 /estimated_length=24 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 229345..229371 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="paired-ends" CONTIG join(AZNC01080582.1:1..19375,gap(353),AZNC01011036.1:1..32821, gap(52),AZNC01035290.1:1..1897,gap(122),AZNC01030286.1:1..47759, gap(2454),AZNC01117527.1:1..4386,gap(10),AZNC01048340.1:1..114639, gap(341),AZNC01037897.1:1..200,gap(24),AZNC01039416.1:1..4911, gap(27),AZNC01061748.1:1..4647) //