LOCUS       KN125858              247307 bp    DNA     linear   CON 05-SEP-2014
DEFINITION  Chaetura pelagica isolate M959 unplaced genomic scaffold
            scaffold311, whole genome shotgun sequence.
ACCESSION   KN125858 AVOS01000000
VERSION     KN125858.1
DBLINK      BioProject: PRJNA210808
            BioSample: SAMN03018471
KEYWORDS    WGS.
SOURCE      Chaetura pelagica (chimney swift)
  ORGANISM  Chaetura pelagica
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes;
            Apodidae; Apodinae; Chaetura.
REFERENCE   1  (bases 1 to 247307)
  AUTHORS   Zhang,G. and Li,C.
  TITLE     Genome evolution of avian class
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 247307)
  AUTHORS   Zhang,G. and Li,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-AUG-2013) China National Genebank, BGI, 2nd Office
            Building, Beishan Industrial Zone,Beishan Road, Yantian District,
            Shenzhen, Guangdong 518083, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 1.6
            Assembly Name         :: ChaPel_1.0
            Genome Coverage       :: 106x
            Sequencing Technology :: Illumina GA II
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..247307
                     /organism="Chaetura pelagica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold311"
                     /isolate="M959"
                     /db_xref="taxon:8897"
                     /chromosome="Unknown"
                     /sex="female"
                     /geo_loc_name="USA: Cameron Parish, Louisiana"
     gene            complement(<5762..>25387)
                     /locus_tag="M959_07503"
     mRNA            complement(join(<5762..5921,6508..6622,6944..7049,
                     7160..7303,7565..7672,8246..8328,9563..9707,12677..12748,
                     13082..13229,14339..14469,15651..15842,16454..16678,
                     17761..17862,19501..19611,20013..20102,20467..20526,
                     21642..21794,23368..23568,25205..>25387))
                     /locus_tag="M959_07503"
                     /product="Importin subunit beta-1"
     CDS             complement(join(<5762..5921,6508..6622,6944..7049,
                     7160..7303,7565..7672,8246..8328,9563..9707,12677..12748,
                     13082..13229,14339..14469,15651..15842,16454..16678,
                     17761..17862,19501..19611,20013..20102,20467..20526,
                     21642..21794,23368..23568,25205..>25387))
                     /locus_tag="M959_07503"
                     /codon_start=1
                     /product="Importin subunit beta-1"
                     /protein_id="KFU84774.1"
                     /db_xref="UniProtKB/Swiss-Prot:P70168"
                     /translation="PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ
                     QRWLAIDASARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPMNQWPELIPQLVA
                     NVTNQHSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLA
                     ATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY
                     METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH
                     TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHV
                     LPFIKEHIKNPDWRYRDAAVMAFGGILEGPEPNQLKPLVIQAMPTLIELMKDPSVVVR
                     DTTAWTVGRICEMLPEAAINDIYLAPLLQCLMEGLSAEPRVASNVCWAFSSLAEAAYE
                     AADVADDQEEPATYCLSSSFELIVQKLLETADRPDGHQNNLRSSAYESLMEIVKNSAK
                     DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD
                     ALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLIEVLGGEFLKYMDAFKPFLGIG
                     LKNYAEYQVCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENLGNENVHRSVKPQILS
                     VFGDIALAIGGEFKKYLDVVLNTLQQASQAQVDKSDYDMVDYLNELREGCLEAYTGII
                     QGLKGDQENVHPDVMLVQPRVEFILSYIDHIAGDEDHTDGVVACAAGLIGDLCTAFGK
                     DVLKLVEARPMIHELLTEGRRSKTNKTKTLATWATKELRKLKNQA"
     assembly_gap    27751..29286
                     /estimated_length=1536
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<34255..>64845)
                     /locus_tag="M959_07504"
     mRNA            complement(join(<34255..34398,36779..36826,36943..37098,
                     37363..37470,38024..38080,38765..38907,39526..39745,
                     41141..41275,42714..42853,43455..43518,44088..44197,
                     45015..45075,45367..45471,46567..46731,49737..49851,
                     51270..51303,51409..51505,51922..52122,53599..53706,
                     55634..55755,56790..56867,64758..>64845))
                     /locus_tag="M959_07504"
                     /product="Puromycin-sensitive aminopeptidase"
     CDS             complement(join(<34255..34398,36779..36826,36943..37098,
                     37363..37470,38024..38080,38765..38907,39526..39745,
                     41141..41275,42714..42853,43455..43518,44088..44197,
                     45015..45075,45367..45471,46567..46731,49737..49851,
                     51270..51303,51409..51505,51922..52122,53599..53706,
                     55634..55755,56790..56867,64758..>64845))
                     /locus_tag="M959_07504"
                     /codon_start=1
                     /product="Puromycin-sensitive aminopeptidase"
                     /protein_id="KFU84775.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q11011"
                     /translation="QVKQATNQIVMNCADIDIITASYAPEGDEEVHATGFNYQNEDEK
                     VTLSFPSTLQKGTGTLKIDFVGELNDKMKGFYRSKYTTPTGDTRYAAVTQFEATDARR
                     AFPCWDEPAIKATFDISLVVPKDRVALSNMNVLDRKPYPDDENLVEVKFARTPIMSTY
                     LVAFVVGEYDFVEARSLDGVLVRVYTPVGKAEQGKFALEVAAKTLPFYKDYFNVPYPL
                     PKIDLIAIADFAAGAMENWGLVTYRETALLIDPKNSCSSSRQWVALVVGHELAHQWFG
                     NLVTMEWWTHLWLNEGFASWIEYLCVDHCFPEYDIWTQFVSADYTRAQELDALDNSHP
                     IEVSVGHPSEVDEIFDAISYSKGASVIRMLHDYIGDEDFRKGMNLYLTKFQQKNAATE
                     DLWDSLEKASGKPIAAVMNTWTKQMGFPLIYVEAEQQDDDKVLKLVQKKFCASGPYTG
                     EDFPMWMVPISICTSDDPTRAKMQILMDKPELTLVLKDVKPEQWVKLNLGTVGFYRTQ
                     YSPDMLESLIPAIKDLSLPPVDRLGLQNDLFSLARAGIISTVEVLKVMEAFVNEPNYT
                     VWSDLSCNLGILSTLLSHTDFYEEIQVFVKDVFSPIGERLGWDPKPGEGHLDALLRGL
                     VLGKLGKAGHKATLEEARRRFKDHVEGKHVLSADLRSPVYVTVLKHGDSATLDTMLKL
                     HKQADMQEEKNRIERVLGAISQPELIQKVLTFALSEEVRPQDTVSVIGGVAGGSKQGR
                     KAAWKFVRDNWEELYNRYQGGFLISRLIKLTVDGFANDKMAAEVKAFFESHPAPSAER
                     TVQQCCENILLNSAWLKRDADNIHLFLLQRQVPPP"
     assembly_gap    37637..37721
                     /estimated_length=85
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    61496..61507
                     /estimated_length=12
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    64202..64503
                     /estimated_length=302
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    72434..75082
                     /estimated_length=2649
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    75754..94968
                     /estimated_length=19215
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    96844..97321
                     /estimated_length=478
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    97930..98186
                     /estimated_length=257
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    98552..98805
                     /estimated_length=254
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    99465..99755
                     /estimated_length=291
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    101527..117255
                     /estimated_length=15729
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <117405..>121903
                     /locus_tag="M959_07505"
     mRNA            join(<117405..117591,117707..117824,120049..120147,
                     120704..120752,121469..121618,121730..>121903)
                     /locus_tag="M959_07505"
                     /product="hypothetical protein"
     CDS             join(<117405..117591,117707..117824,120049..120147,
                     120704..120752,121469..121618,121730..>121903)
                     /locus_tag="M959_07505"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KFU84776.1"
                     /translation="SVLRPAGAAPACLVVPVRTKRRFSVPEWARELSPEEKERRLRSL
                     GPMFPDERIERTFYLASTAEIIDPYVPPEGDARLTSLSKDGLKQKMEKLKQSAASQLA
                     LRKIKDHDPDFSTKTFPEKAQEIFIEAHNCLANFNKQKLHSLVTERCYPEMVRGNRYR
                     TIRWSFLESLEPPRVVHVRCDSVINRGNLYGQVTVRMHTRQILAIYDRFGRLMYGGEQ
                     LPKDVLEYVVFERYLVNPYGTWRMHGKIVPEWAPPKEPIIK"
     assembly_gap    118064..119540
                     /estimated_length=1477
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    131700..132330
                     /estimated_length=631
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<132664..>134539)
                     /locus_tag="M959_07506"
     mRNA            complement(join(<132664..133015,133602..133711,
                     134100..134197,134371..>134539))
                     /locus_tag="M959_07506"
                     /product="putative G-protein coupled receptor 158"
     CDS             complement(join(<132664..133015,133602..133711,
                     134100..134197,134371..>134539))
                     /locus_tag="M959_07506"
                     /codon_start=1
                     /product="putative G-protein coupled receptor 158"
                     /protein_id="KFU84777.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q5T848"
                     /translation="CQPCHQGCATCQDDKPCLIQEDHALRAAVLSCQAGCMLAVFLSM
                     LVSYHFRRSKARRCTLMSLSLQRIRSSGVILLETILFGSLLLYFPVFILYFKPSIFRC
                     IVLRWVRALGFAIVYGTITLKLHRVSPPAQGDESWCLQAGCARGSPAPDPSSNVCPGM
                     TVLALMLPEAGGSQQAPTPQEQQGDGSGCSALLCPAAEVLFLLWGSFLCYGTRPVPSA
                     FHEPRYMGIALHNELLISAAFHLAR"
     assembly_gap    133480..133593
                     /estimated_length=114
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    136385..139761
                     /estimated_length=3377
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <143482..>153797
                     /locus_tag="M959_07507"
     mRNA            join(<143482..143548,146367..146471,147354..147455,
                     148097..148227,148652..148820,151490..151618,
                     153231..153366,153680..>153797)
                     /locus_tag="M959_07507"
                     /product="Suppressor of cytokine signaling 7"
     CDS             join(<143482..143548,146367..146471,147354..147455,
                     148097..148227,148652..148820,151490..151618,
                     153231..153366,153680..>153797)
                     /locus_tag="M959_07507"
                     /codon_start=1
                     /product="Suppressor of cytokine signaling 7"
                     /protein_id="KFU84778.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q8VHQ2"
                     /translation="RKHRLTRTQSAFSPVVFSPLFTGETVSLVDVDISPRGLSSPHPP
                     TPPPPPRRSLSLLDDISGTLPASVLVGPMGSSLQSFPLPPPPPPHAPDAFPRVVPLRP
                     PEATPEQPPPPLQCPLYRPDSSSFAASLRELEKCGWYWGPMNWEDAEMKLKGKPDGSF
                     LVRDSSDPRYILSLSFRSQGITHHTRMEHYRGTFSLWCHPKFEDRCQSVVEFIKRAIM
                     HSKNGKFLYFLRSRVPGLPPTPVQLLYPVSRFSNVKSLQHLCRFRIRQLVRIDHIPEL
                     PLPKPLISYIRKFYYYDPQEEVYLSLKEAQLISKQKQETESST"
     assembly_gap    159401..165269
                     /estimated_length=5869
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    165832..167165
                     /estimated_length=1334
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    167675..168131
                     /estimated_length=457
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    169791..169814
                     /estimated_length=24
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    170797..171475
                     /estimated_length=679
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    173322..173577
                     /estimated_length=256
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    174533..174894
                     /estimated_length=362
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    178471..180298
                     /estimated_length=1828
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    180798..180879
                     /estimated_length=82
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    181236..182081
                     /estimated_length=846
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    184599..184800
                     /estimated_length=202
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    189818..190678
                     /estimated_length=861
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    191009..191074
                     /estimated_length=66
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <196692..>197227
                     /locus_tag="M959_07508"
     mRNA            join(<196692..196775,196898..196987,197153..>197227)
                     /locus_tag="M959_07508"
                     /product="Rho GTPase-activating protein 23"
     CDS             join(<196692..196775,196898..196987,197153..>197227)
                     /locus_tag="M959_07508"
                     /codon_start=1
                     /product="Rho GTPase-activating protein 23"
                     /protein_id="KFU84779.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q9P227"
                     /translation="LLSDKYNDFIEANRIEDASERMRTLRKLIRDLPGHYYETLKFLV
                     GHLKTIADHSEKNKMEPRNLALVFGPTLVRTSEDNMTDM"
     assembly_gap    199231..200954
                     /estimated_length=1724
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    201225..201928
                     /estimated_length=704
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    203178..203371
                     /estimated_length=194
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    204204..204718
                     /estimated_length=515
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(207511..227249)
                     /locus_tag="M959_07509"
                     /note="SRC kinase signaling inhibitor 1; contains
                     frameshift"
     assembly_gap    210301..210760
                     /estimated_length=460
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    212880..216454
                     /estimated_length=3575
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    216800..216921
                     /estimated_length=122
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    217923..219275
                     /estimated_length=1353
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    219493..219558
                     /estimated_length=66
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    223268..224456
                     /estimated_length=1189
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    246408..246633
                     /estimated_length=226
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
CONTIG      join(AVOS01006838.1:1..27750,gap(1536),AVOS01006839.1:1..8350,
            gap(85),AVOS01006840.1:1..23774,gap(12),AVOS01006841.1:1..2694,
            gap(302),AVOS01006842.1:1..7930,gap(2649),AVOS01006843.1:1..671,
            gap(19215),AVOS01006844.1:1..1875,gap(478),AVOS01006845.1:1..608,
            gap(257),AVOS01006846.1:1..365,gap(254),AVOS01006847.1:1..659,
            gap(291),AVOS01006848.1:1..1771,gap(15729),AVOS01006849.1:1..808,
            gap(1477),AVOS01006850.1:1..12159,gap(631),AVOS01006851.1:1..1149,
            gap(114),AVOS01006852.1:1..2791,gap(3377),AVOS01006853.1:1..19639,
            gap(5869),AVOS01006854.1:1..562,gap(1334),AVOS01006855.1:1..509,
            gap(457),AVOS01006856.1:1..1659,gap(24),AVOS01006857.1:1..982,
            gap(679),AVOS01006858.1:1..1846,gap(256),AVOS01006859.1:1..955,
            gap(362),AVOS01006860.1:1..3576,gap(1828),AVOS01006861.1:1..499,
            gap(82),AVOS01006862.1:1..356,gap(846),AVOS01006863.1:1..2517,
            gap(202),AVOS01006864.1:1..5017,gap(861),AVOS01006865.1:1..330,
            gap(66),AVOS01006866.1:1..8156,gap(1724),AVOS01006867.1:1..270,
            gap(704),AVOS01006868.1:1..1249,gap(194),AVOS01006869.1:1..832,
            gap(515),AVOS01006870.1:1..5582,gap(460),AVOS01006871.1:1..2119,
            gap(3575),AVOS01006872.1:1..345,gap(122),AVOS01006873.1:1..1001,
            gap(1353),AVOS01006874.1:1..217,gap(66),AVOS01006875.1:1..3709,
            gap(1189),AVOS01006876.1:1..21951,gap(226),AVOS01006877.1:1..674)
//