LOCUS       KN122373             2244848 bp    DNA     linear   CON 04-SEP-2014
DEFINITION  Fukomys damarensis unplaced genomic scaffold scaffold244, whole
            genome shotgun sequence.
ACCESSION   KN122373 AYUG01000000
VERSION     KN122373.1
DBLINK      BioProject: PRJNA190641
            BioSample: SAMN02339281
KEYWORDS    WGS.
SOURCE      Fukomys damarensis (Damara mole-rat)
  ORGANISM  Fukomys damarensis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
            Hystricomorpha; Bathyergidae; Fukomys.
REFERENCE   1  (bases 1 to 2244848)
  AUTHORS   Gladyshev,V.N. and Fang,X.
  TITLE     The Damaraland mole rat (Fukomys damarensis) genome and evolution
            of African mole rats
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2244848)
  AUTHORS   Gladyshev,V.N. and Fang,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2013) Department of Science and Technology,
            Beijing Genomics Institute, Shenzhen, 2nd Office Building, Beishan
            Industrial Zone, BeishanRoad,Yantian District, Shenzhen, Guangdong
            518083, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method       :: SOAPdenovo v. 1.06
            Assembly Name         :: DMR_v1.0
            Genome Coverage       :: 140x
            Sequencing Technology :: Illumina Hiseq 2000
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..2244848
                     /organism="Fukomys damarensis"
                     /mol_type="genomic DNA"
                     /submitter_seqid="scaffold244"
                     /db_xref="taxon:885580"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="liver"
                     /geo_loc_name="USA"
                     /collection_date="Nov-2011"
     assembly_gap    15704..17131
                     /estimated_length=1428
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    52749..53416
                     /estimated_length=668
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    72325..74725
                     /estimated_length=2401
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    92477..93233
                     /estimated_length=757
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    93446..94359
                     /estimated_length=914
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    118162..118198
                     /estimated_length=37
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    126587..127063
                     /estimated_length=477
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    135524..136255
                     /estimated_length=732
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    194448..194677
                     /estimated_length=230
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    259705..259817
                     /estimated_length=113
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    261631..266424
                     /estimated_length=4794
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    272672..272748
                     /estimated_length=77
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <278048..>467665
                     /locus_tag="H920_07771"
     mRNA            join(<278048..278149,297686..297847,351162..351380,
                     387111..387257,415433..415673,463315..463479,
                     466794..>467665)
                     /locus_tag="H920_07771"
                     /product="Potassium/sodium hyperpolarization-activated
                     cyclic nucleotide-gated channel 1"
     CDS             join(278048..278149,297686..297847,351162..351380,
                     387111..387257,415433..415673,463315..463479,
                     466794..467665)
                     /locus_tag="H920_07771"
                     /codon_start=1
                     /product="Potassium/sodium hyperpolarization-activated
                     cyclic nucleotide-gated channel 1"
                     /protein_id="KFO30817.1"
                     /db_xref="InterPro:IPR000595"
                     /db_xref="InterPro:IPR018490"
                     /db_xref="UniProtKB/Swiss-Prot:Q9MZS1"
                     /translation="MVGRKQLVVRNQVVKEGLTQCNTWPLEEQWQMLVIFHMTYDLAS
                     AVVRIFNLIGMMLLLCHWDGCLQFLVPLLQDFPSDCWVSLNKMVNVSWGQQYSYALFK
                     AMSHMLCIGYGAQAPVSMSDLWITMLSMIVGATCYAMFVGHATALIQSLDSSRRQYQE
                     KYKQVEQYMSFHKLPADMRQKIHDYYEHRYQGKIFDEENILNELNDPLREEIVNFNCR
                     KLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITK
                     SSKEMKLTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF
                     ETVAIDRLDRIGKKNSILLQKFQKDLNTGVFNNQENEILKQIVKHDREMVQAIAPINY
                     PQMTTLNSTSSTATPTSRMRTQSPPVYTATSLSHSNLHSPSPSTQTPQPSAILSPCSY
                     TTAVCSPPVQSPLATRTFHYASPTASQLSLMQQQVPQSQPPQTQPQPQQQQTPGSSTP
                     KNEVHKSTQALHNTNLTREVRPLSASQPSLPHEVATLISRPHPTVGESLASIPQPVTA
                     VHGTGLQAGGRSTVSQRVTLFRQMSSGAIPPNRGVPPAPPPPAPALQREASPVLNTDP
                     EAEKPRFASNL"
     assembly_gap    282349..283008
                     /estimated_length=660
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    322744..323183
                     /estimated_length=440
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    363752..364124
                     /estimated_length=373
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    402774..403436
                     /estimated_length=663
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    411595..411806
                     /estimated_length=212
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    434382..434618
                     /estimated_length=237
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    474541..474676
                     /estimated_length=136
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    475716..475924
                     /estimated_length=209
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    557074..557127
                     /estimated_length=54
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    574056..574143
                     /estimated_length=88
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    578361..578426
                     /estimated_length=66
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    610960..611280
                     /estimated_length=321
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    640752..642530
                     /estimated_length=1779
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    738049..738210
                     /estimated_length=162
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    745341..745398
                     /estimated_length=58
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    757552..757664
                     /estimated_length=113
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<862447..>869159)
                     /locus_tag="H920_07772"
     mRNA            complement(join(<862447..862736,864884..865060,
                     866196..866301,867226..867371,868583..>869159))
                     /locus_tag="H920_07772"
                     /product="28S ribosomal protein S30, mitochondrial"
     CDS             complement(join(862447..862736,864884..865060,
                     866196..866301,867226..867371,868583..869159))
                     /locus_tag="H920_07772"
                     /note="GO_component: GO:0005739 - mitochondrion [Evidence
                     IEA];
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /product="28S ribosomal protein S30, mitochondrial"
                     /protein_id="KFO30818.1"
                     /db_xref="InterPro:IPR010793"
                     /db_xref="UniProtKB/Swiss-Prot:P82924"
                     /translation="MAAARVWKLVCPGRGLSLHTAAEAASTATESTSTDVGAFPVARY
                     PPIVASLTAKSKAARLRRVERWQATVHAAQSVDEKLRILTKMQFMKYVVYPQTFALNA
                     DRWYQGFTKTVFLSGLPAAPAEPGPSLDLAALRDIACDSLLQESFYLRRKRRPPLYEE
                     LETVASPFLDQLVAALMGYLSPLNPVLASAAVDCKRPVHFYWLRGEEIIPSGHRKGRI
                     DALRYQINDKPNNQIRISKQLTEFAPLDYSVPIEIPVMKCKPDKLPLFKRQYENNIFI
                     GSKTADPCCYGHTQFHLLPDKLKRERLLKQNCADQIEAVFRANAITSLFAWTGAQAMY
                     QGFWSEADVTRPFVSQGVITDGKYFSFFCYQLNTLALTVQADQNNPRKNICWGTQSKP
                     LYETIEDNNVKGFNDDVLLQIVHFLLNKPKEDKTQPLEN"
     assembly_gap    872913..873178
                     /estimated_length=266
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    894729..894843
                     /estimated_length=115
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    918648..918778
                     /estimated_length=131
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    950340..950514
                     /estimated_length=175
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    965551..965641
                     /estimated_length=91
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1132208..1132268
                     /estimated_length=61
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1143744..1143877
                     /estimated_length=134
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1157628..1157655
                     /estimated_length=28
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1206835..>1283865
                     /locus_tag="H920_07773"
     mRNA            join(<1206835..1207066,1279696..1279799,1283668..>1283865)
                     /locus_tag="H920_07773"
                     /product="Fibroblast growth factor 10"
     CDS             join(1206835..1207066,1279696..1279799,1283668..1283865)
                     /locus_tag="H920_07773"
                     /note="GO_function: GO:0008083 - growth factor activity
                     [Evidence IEA]"
                     /codon_start=1
                     /product="Fibroblast growth factor 10"
                     /protein_id="KFO30819.1"
                     /db_xref="InterPro:IPR002209"
                     /db_xref="InterPro:IPR002348"
                     /db_xref="InterPro:IPR008996"
                     /db_xref="UniProtKB/Swiss-Prot:P70492"
                     /translation="MVSPEATNSSSSSSSSSSSSSSSSSFSSPSSAGRHVRSYNHLQG
                     DVRWRKLFSFTKYFLKIEKNGKVSGTKKENCPYSILEITSVEIGVVAVKAINSNYYLA
                     MNKKGKLYGSKEFNNDCKLKERIEENGYNTYASFNWQHNGRQMYVALNGKGAPRRGQK
                     TRRKNTSAHFLPMVVHS"
     assembly_gap    1271358..1272187
                     /estimated_length=830
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1296248..1296545
                     /estimated_length=298
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1313087..1313250
                     /estimated_length=164
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1325342..1327831
                     /estimated_length=2490
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1351922..1352190
                     /estimated_length=269
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1359101..>1375055)
                     /locus_tag="H920_07774"
     mRNA            complement(join(<1359101..1359253,1374990..>1375055))
                     /locus_tag="H920_07774"
                     /product="hypothetical protein"
     CDS             complement(join(1359101..1359253,1374990..1375055))
                     /locus_tag="H920_07774"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KFO30820.1"
                     /translation="MKTEAHWKSEENLCNKGTQTTMKKKEEEEEEEEEEEEEEEEEEE
                     EKEEEEEEEEEEEEEEEEEEEEEEEEER"
     assembly_gap    1378506..1379137
                     /estimated_length=632
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1402667..1402787
                     /estimated_length=121
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1417916..1417976
                     /estimated_length=61
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1498817..1499003
                     /estimated_length=187
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1517758..1517803
                     /estimated_length=46
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1526981..1526998
                     /estimated_length=18
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1542799..1542861
                     /estimated_length=63
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1653162..1653270
                     /estimated_length=109
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1682795..1683981
                     /estimated_length=1187
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<1795321..>1902943)
                     /locus_tag="H920_07775"
     mRNA            complement(join(<1795321..1795470,1797619..1797734,
                     1798930..1799048,1821245..1821326,1822482..1822641,
                     1849970..1850149,1852477..1852637,1853840..1854073,
                     1856624..1856776,1857716..1857911,1859404..1859549,
                     1860339..1860449,1861620..1861781,1864336..1864489,
                     1864967..1865158,1865897..1866030,1881593..1881780,
                     1886614..1886702,1891100..1891187,1895261..1895475,
                     1898343..1898572,1902793..>1902943))
                     /locus_tag="H920_07775"
                     /product="NAD(P) transhydrogenase, mitochondrial"
     CDS             complement(join(1795321..1795470,1797619..1797734,
                     1798930..1799048,1821245..1821326,1822482..1822641,
                     1849970..1850149,1852477..1852637,1853840..1854073,
                     1856624..1856776,1857716..1857911,1859404..1859549,
                     1860339..1860449,1861620..1861781,1864336..1864489,
                     1864967..1865158,1865897..1866030,1881593..1881780,
                     1886614..1886702,1891100..1891187,1895261..1895475,
                     1898343..1898572,1902793..1902943))
                     /locus_tag="H920_07775"
                     /note="GO_function: GO:0008746 - NAD(P)+ transhydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0055114 - oxidation-reduction process
                     [Evidence IEA]"
                     /codon_start=1
                     /product="NAD(P) transhydrogenase, mitochondrial"
                     /protein_id="KFO30821.1"
                     /db_xref="InterPro:IPR004003"
                     /db_xref="InterPro:IPR007698"
                     /db_xref="InterPro:IPR007886"
                     /db_xref="UniProtKB/Swiss-Prot:P11024"
                     /translation="MANLLKTVVTGCSCPLLSNLGSRKVLPGKKDFLRTFHTHQALWC
                     KAPAKPGIPYKQLTVGVPKEIFQNEKRVALSPAGVQALVKQGFNVIVESGAGEASKFS
                     DDHYRAAGAQIQGTKEVLASDLVVKVRAPMVNPSGVHEADLLKTSGTLISFIYPAQNP
                     DLLNKLSKRKTTVLAMDQVPRVTIAQGYDALSSMANIAGYKAVVLAANHFGRFFTGQI
                     TAAGKVPPAKILIIGGGVAGLASAGAAKSMGAIVRGFDTRAAALEQFKSLGAEPLEVD
                     LKESGEGQGGYAKEMSKEFIEAEMKLFAQQCKEVDILISTALIPGKKAPVLFNKEMIE
                     SMKEGSVVVDLAAEAGGNFETTKPGELYIHKGVTHIGYTDLPSRMATQASTLYSNNIT
                     KLLKAISPDKDNFYFEVKDDFDFGTMSHVIRGTVVMKDGEVIFPAPTPKNIPQDAPVK
                     QKTVAELEAEKAATVTPFRKTMTTASAYTAGLTGILGLGVVAPNLAFSQMVTTFGLAG
                     IVGYHTVWGVTPALHSPLMSVTNAISGLTAVGGLALMGGHLYPSTTSQGLAALATFIS
                     SVNIAGGFLVTQRMLDMFKRPTDPPEYNYLYLLPAGTFVGGYLAALYSGYNIEQIMYL
                     GSGLCCVGALAGLSTQGTARLGNALGMIGVAGGLAATLGGLKPCPELLAQMSGAMAMG
                     GTIAGLSTQGTARLGNALGMIGVAGGLAATLGGLKPCPELLAQMSGAMAMGGTIGLTI
                     AKRIQISDLPQLVAAFHSLVGLAAVLTCIAEYIIEYPHFAMDATANLTKIVAYLGTYI
                     GGVTFSGSLVAYGKLQGILNSAPLLLPGRHALNAGLLAASVGGIIPFMVDPSFTTGIT
                     CLGSVSALSAVMGVTLTAAIGGADMPVVITVLNSYSGWALCAEGFLLNNNLLTIVGAL
                     IGSSGAILSYIMCVAMNRSLANVILGGYGTTSTAGGKPMEISGTHTEINLDNATDMIR
                     EANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGVHPVAGRMPGQLNVLLAEA
                     GVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQV
                     IVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRESYQK"
     assembly_gap    1823696..1823842
                     /estimated_length=147
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1826141..1835547
                     /estimated_length=9407
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1858470..1858663
                     /estimated_length=194
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1892260..1892271
                     /estimated_length=12
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1899560..1899950
                     /estimated_length=391
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1906969..1907029
                     /estimated_length=61
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1925586..1926439
                     /estimated_length=854
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1927000..>1954509
                     /locus_tag="H920_07776"
     mRNA            join(<1927000..1927095,1935854..1936039,1939449..1939561,
                     1943299..1943410,1944980..1945105,1946603..1946709,
                     1947425..1947542,1948182..1948236,1952290..1952383,
                     1954416..>1954509)
                     /locus_tag="H920_07776"
                     /product="Polyadenylate-binding protein-interacting
                     protein 1"
     CDS             join(1927000..1927095,1935854..1936039,1939449..1939561,
                     1943299..1943410,1944980..1945105,1946603..1946709,
                     1947425..1947542,1948182..1948236,1952290..1952383,
                     1954416..1954509)
                     /locus_tag="H920_07776"
                     /note="GO_function: GO:0005488 - binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0016070 - RNA metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /product="Polyadenylate-binding protein-interacting
                     protein 1"
                     /protein_id="KFO30822.1"
                     /db_xref="InterPro:IPR003890"
                     /db_xref="InterPro:IPR009818"
                     /db_xref="InterPro:IPR016024"
                     /db_xref="UniProtKB/Swiss-Prot:Q8VE62"
                     /translation="MAKPQVVVAPVLMSKLSANAPEFYPSGYSAYTESYEDGCEDYPT
                     LSDYVQEFLNHLTEQPGSFETEIEHFAETLNGWVTTDDALQELVELIYQQATSIPNFS
                     YMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLF
                     LGELYLNLEIKGSNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLE
                     DAWKEKLKTDMEEIIQRIENVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREA
                     TPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREEFFPDYEENGTDLSGAG
                     DPYLDDIDDEMDPEIEEAYEKFCLESEHKRKQ"
     assembly_gap    1951283..1951346
                     /estimated_length=64
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1955950..1955964
                     /estimated_length=15
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1964637..>1987337
                     /locus_tag="H920_07777"
     mRNA            join(<1964637..1964831,1964984..1965073,1967745..1968376,
                     1970478..1970576,1971626..1971749,1980585..1980676,
                     1981222..1981291,1981955..1982125,1982838..1982932,
                     1984621..1984719,1986294..1986334,1987162..>1987337)
                     /locus_tag="H920_07777"
                     /product="hypothetical protein"
     CDS             join(1964637..1964831,1964984..1965073,1967745..1968376,
                     1970478..1970576,1971626..1971749,1980585..1980676,
                     1981222..1981291,1981955..1982125,1982838..1982932,
                     1984621..1984719,1986294..1986334,1987162..1987337)
                     /locus_tag="H920_07777"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KFO30823.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q96MH7"
                     /translation="MAAEVQMVLYEDDSVQVQYVDGSKLQLSPCGSEFLFEKSPPISA
                     HPLEQPERIRQRTHFVISTYRKQLQRALDFRNASATCPFLSERIIPSERKKHIFIDSS
                     EVRWPNLEADDSMISMEGGTVKITSLDGHAYLCLPKSQHEFTVHFLCKISQKPGLLSE
                     INKKVPKDKLVEKANKISGSLSGQRLKNKENELCCQILKSKEPLQKTSCANETEGRAE
                     LPSSDANHTCIYTWVEQCWSVASCPEEWQYPLSLALFFHNKVTHMPKIDPDTTTSRIL
                     TSHVSEERRKEVSILPKALLLSCPFPHLHRWKFCDTLLQTQTDEEYSYPELVKVVWYK
                     GITYRLTHKNMNSIEIYPGDGSVLKSEGAHFGNYFTYYSCQEGAEEREEKTYSVNNLP
                     PDRPGSLFSVCSLIKQATRILQHCAKTRLSLSHNYGICCWKMVPGINNSNILPLLLKE
                     SLISNVGRFLAYSDDKVHAIFLDGITLTLNWNFSSFVEKEQVNQGLNLGWCRLTFPDG
                     QDQLIQIEHPGPYERYVKIVTSWCRGLTQMSPREMLTCPSSSLLEENWSVASELEKIQ
                     KFNLLLENSGVLNYTSSKKNEQSSDSSEILLEVDEKRVSVALKKTSEILQDIDYLLSN
                     SKK"
     assembly_gap    1972008..1976262
                     /estimated_length=4255
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    1993483..1993733
                     /estimated_length=251
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            <1999949..>2009440
                     /locus_tag="H920_07778"
     mRNA            join(<1999949..2000266,2009105..>2009440)
                     /locus_tag="H920_07778"
                     /product="hypothetical protein"
     CDS             join(<1999949..2000266,2009105..2009440)
                     /locus_tag="H920_07778"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="KFO30824.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q0VDI3"
                     /translation="FMMASEAQKTYALFQSCSTDSLISSFGLGIFCLVADRLLQFSII
                     QQNDWLRALSDNAVHCVIGMWSWAIVTGTKKKTDFGEVILAGFLASVIDVDHFFLARS
                     LSLKAALSLPRRPFLHCSTVIPIVALTLKFTMHLFKLKDSWYFLPWMLFISWTSHHIR
                     DGIRHGLWICPFGKTSPVPFWLYVVTTSSLPHVCSFIMYLTGTRQTISSKHGIRLDV"
     assembly_gap    2028696..2030134
                     /estimated_length=1439
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2031005..2031172
                     /estimated_length=168
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2034186..>2034521)
                     /locus_tag="H920_07779"
     mRNA            complement(<2034186..>2034521)
                     /locus_tag="H920_07779"
                     /product="Shugoshin-like 1"
     CDS             complement(2034186..2034521)
                     /locus_tag="H920_07779"
                     /codon_start=1
                     /product="Shugoshin-like 1"
                     /protein_id="KFO30825.1"
                     /db_xref="UniProtKB/Swiss-Prot:Q5FBB7"
                     /translation="MSAEGISARGSGLVGLEHCNAGSSKAGRLCGVLGWDVRKRATAA
                     QVPAKAEDGQGKVPEKVLSRQLEDIKKRAKEKRNKNLADSGKRRAFVLAPGQVVTNCR
                     KITKTTTEC"
     gene            <2039280..>2096441
                     /locus_tag="H920_07780"
     mRNA            join(<2039280..2039407,2088974..2089431,2089768..2089893,
                     2090410..2090574,2091888..2092053,2092939..2093109,
                     2093631..2093737,2094373..2094498,2094702..2094865,
                     2096352..>2096441)
                     /locus_tag="H920_07780"
                     /product="Hydroxymethylglutaryl-CoA synthase, cytoplasmic"
     CDS             join(<2039280..2039407,2088974..2089431,2089768..2089893,
                     2090410..2090574,2091888..2092053,2092939..2093109,
                     2093631..2093737,2094373..2094498,2094702..2094865,
                     2096352..2096441)
                     /locus_tag="H920_07780"
                     /note="GO_function: GO:0003824 - catalytic activity
                     [Evidence IEA];
                     GO_function: GO:0004421 - hydroxymethylglutaryl-CoA
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /product="Hydroxymethylglutaryl-CoA synthase, cytoplasmic"
                     /protein_id="KFO30826.1"
                     /db_xref="InterPro:IPR013528"
                     /db_xref="InterPro:IPR013746"
                     /db_xref="InterPro:IPR016039"
                     /db_xref="UniProtKB/Swiss-Prot:P17425"
                     /translation="AILPMASSCCTEVSHHISRRLLERVTTCRFQRADGDCNLAAVIF
                     FAMPGSLPLNAEACWPKDVGIVALEIYFPSQYVDQTQLEKYDGVDAGKYTIGLGQAKM
                     GFCSDREDITSLCLTVVQKLMERNNLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEE
                     SGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTG
                     GAGAVALLIGPNAALIFDRGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALD
                     RCYSVYRKKIRAQWQKEGNDKDFTLNDFGFMIFHSPYCKLVQKSLARMMLNDFLNDQN
                     RDKNTIYSGLEAFGDVKLEDTYFDRDVEKAFMKASSELFNQKTKASLLVSNQNGNMYT
                     SSVYGSLASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLRVTQDATPGSALDKITAS
                     LCDLKSRLDSRTCVVPDIFAENMKLREDTHHLANYIPQSSVDSLFEGTWYLVRVDEKH
                     RRTYARRPSPNDDTLDEGVGLVHSNTATEHIPSPAKKVPRLPATGTEPEAAVISNGEH
                     "
     assembly_gap    2052097..2056075
                     /estimated_length=3979
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2067758..2067782
                     /estimated_length=25
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2095477..2095762
                     /estimated_length=286
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2101103..2101246
                     /estimated_length=144
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2103006..>2117869)
                     /locus_tag="H920_07781"
     mRNA            complement(join(<2103006..2103755,2104621..2104889,
                     2117578..>2117869))
                     /locus_tag="H920_07781"
                     /product="Serine/threonine-protein kinase NIM1"
     CDS             complement(join(2103006..2103755,2104621..2104889,
                     2117578..2117869))
                     /locus_tag="H920_07781"
                     /note="GO_function: GO:0004672 - protein kinase activity
                     [Evidence IEA];
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /product="Serine/threonine-protein kinase NIM1"
                     /protein_id="KFO30827.1"
                     /db_xref="InterPro:IPR000719"
                     /db_xref="InterPro:IPR002290"
                     /db_xref="InterPro:IPR011009"
                     /db_xref="InterPro:IPR017442"
                     /db_xref="InterPro:IPR020635"
                     /db_xref="UniProtKB/Swiss-Prot:Q8IY84"
                     /translation="MTAICVNGSGLVNPHYARWDRRDSVESNCQTECSKEGEEGQSHQ
                     LTPFEKLTQDMSQDEKVVREITMGKRIGFYRIRGEIGSGNFSQVKLGIHSLTKEKVAI
                     KILDKTKLDQKTQRLLSREISSMEKLHHPNIIRLYEVVETLSKLHLVMEYAVGGELFG
                     KINTEGKLSEPESKLIFSQIVSAVKHMHENQIIHRDLKAENVFYTSSTCVKVGDFGFS
                     TVSKKGEMLNTFCGSPPYAAPELFRDEHYVGIYVDIWALGVLLYFMVTGTMPFRAETV
                     TKLKKSILEGTYSVPPHVSEPCHRLIRGVLQPIPTERYAIDYIMNNEWMQGVPYPTPL
                     EPFQLDPKHLSETSTLREEENEVKSTLEHLGITEEHIRNNQGRDARSSITGVYRIILH
                     RVQRKRALESVPIMILPDPKERDLKKGSRVYKGIRHTSKFCSIL"
     assembly_gap    2124931..2126614
                     /estimated_length=1684
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2127532..2127841
                     /estimated_length=310
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2128967..2129103
                     /estimated_length=137
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2131524..2133273
                     /estimated_length=1750
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2147043..2147120
                     /estimated_length=78
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2149847..2150588
                     /estimated_length=742
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2168821..2169253
                     /estimated_length=433
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     gene            complement(<2174423..>2209554)
                     /locus_tag="H920_07782"
     mRNA            complement(join(<2174423..2175109,2176458..2176588,
                     2183901..2184123,2184226..2184589,2197284..2197428,
                     2208171..2208272,2209431..>2209554))
                     /locus_tag="H920_07782"
                     /product="Zinc finger protein 131"
     CDS             complement(join(2174423..2175109,2176458..2176588,
                     2183901..2184123,2184226..2184589,2197284..2197428,
                     2208171..2208272,2209431..2209554))
                     /locus_tag="H920_07782"
                     /note="GO_component: GO:0005622 - intracellular [Evidence
                     IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /product="Zinc finger protein 131"
                     /protein_id="KFO30828.1"
                     /db_xref="InterPro:IPR000210"
                     /db_xref="InterPro:IPR007087"
                     /db_xref="InterPro:IPR011333"
                     /db_xref="InterPro:IPR013069"
                     /db_xref="InterPro:IPR015880"
                     /db_xref="UniProtKB/Swiss-Prot:Q5RAU9"
                     /translation="MEAEETMECLQEFPEHHKMILDRLNEQREQDRFTDITLIVDGHH
                     FKAHKAVLAACSKFFYKFFQEFTQEPLVEIEGVSKMAFRHLIEFTYTAKLMIQGEEEA
                     NDVWKAAEFLQMLEAIKALEVRNKENSAPIEENNTTGKNEAKKRKIAETSNVITETLP
                     SAESEPVEIEVEIAEGTIEVEDEGIETLEEVASAKQTIKYIQSTGSSDDSALALLADI
                     TSKYRQGDRKGQIKEDNGCASDPISKQEHMKSHSTESFKCEICNKRYLRESAWKQHLN
                     CYHLEEGGVSKKQRTGKKIHICQYCEKQFDHFGHFKEHLRKHTGEKPFECPNCHERFA
                     RNSTLKCHLTACQTGVGAKKGRKKLYECQVCNSVFNSWDQFKDHLVIHTGDKPNHCTL
                     CDLWFMQGNEFRRHLDESHNISERLVTEEVLSVETRLQTEPVTSMTIIEQVGKVHMLP
                     LLQVQVDSAQVTVEQVHPDLLQDGQTHDSHISELPEQVQVSYLEVGRIQTEEGTEVHV
                     EELHVERVNQMPVEVQTELLEADLDHMTPEIMSQEEKEPSQADGAEVAREDHEGAEGL
                     KTKTTVDRQAEKTENEDRTVIPVLE"
     assembly_gap    2181428..2181558
                     /estimated_length=131
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2206220..2206315
                     /estimated_length=96
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2209874..2209914
                     /estimated_length=41
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2210661..2212771
                     /estimated_length=2111
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2217756..2217967
                     /estimated_length=212
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2228230..2228450
                     /estimated_length=221
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    2234305..2234426
                     /estimated_length=122
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
CONTIG      join(AYUG01102254.1:1..15703,gap(1428),AYUG01102255.1:1..35617,
            gap(668),AYUG01102256.1:1..18908,gap(2401),AYUG01102257.1:1..17751,
            gap(757),AYUG01102258.1:1..212,gap(914),AYUG01102259.1:1..23802,
            gap(37),AYUG01102260.1:1..8388,gap(477),AYUG01102261.1:1..8460,
            gap(732),AYUG01102262.1:1..58192,gap(230),AYUG01102263.1:1..65027,
            gap(113),AYUG01102264.1:1..1813,gap(4794),AYUG01102265.1:1..6247,
            gap(77),AYUG01102266.1:1..9600,gap(660),AYUG01102267.1:1..39735,
            gap(440),AYUG01102268.1:1..40568,gap(373),AYUG01102269.1:1..38649,
            gap(663),AYUG01102270.1:1..8158,gap(212),AYUG01102271.1:1..22575,
            gap(237),AYUG01102272.1:1..39922,gap(136),AYUG01102273.1:1..1039,
            gap(209),AYUG01102274.1:1..81149,gap(54),AYUG01102275.1:1..16928,
            gap(88),AYUG01102276.1:1..4217,gap(66),AYUG01102277.1:1..32533,
            gap(321),AYUG01102278.1:1..29471,gap(1779),AYUG01102279.1:1..95518,
            gap(162),AYUG01102280.1:1..7130,gap(58),AYUG01102281.1:1..12153,
            gap(113),AYUG01102282.1:1..115248,gap(266),AYUG01102283.1:1..21550,
            gap(115),AYUG01102284.1:1..23804,gap(131),AYUG01102285.1:1..31561,
            gap(175),AYUG01102286.1:1..15036,gap(91),AYUG01102287.1:1..166566,
            gap(61),AYUG01102288.1:1..11475,gap(134),AYUG01102289.1:1..13750,
            gap(28),AYUG01102290.1:1..113702,gap(830),AYUG01102291.1:1..24060,
            gap(298),AYUG01102292.1:1..16541,gap(164),AYUG01102293.1:1..12091,
            gap(2490),AYUG01102294.1:1..24090,gap(269),AYUG01102295.1:1..26315,
            gap(632),AYUG01102296.1:1..23529,gap(121),AYUG01102297.1:1..15128,
            gap(61),AYUG01102298.1:1..80840,gap(187),AYUG01102299.1:1..18754,
            gap(46),AYUG01102300.1:1..9177,gap(18),AYUG01102301.1:1..15800,
            gap(63),AYUG01102302.1:1..110300,gap(109),AYUG01102303.1:1..29524,
            gap(1187),AYUG01102304.1:1..139714,gap(147),AYUG01102305.1:1..2298,
            gap(9407),AYUG01102306.1:1..22922,gap(194),AYUG01102307.1:1..33596,
            gap(12),AYUG01102308.1:1..7288,gap(391),AYUG01102309.1:1..7018,
            gap(61),AYUG01102310.1:1..18556,gap(854),AYUG01102311.1:1..24843,
            gap(64),AYUG01102312.1:1..4603,gap(15),AYUG01102313.1:1..16043,
            gap(4255),AYUG01102314.1:1..17220,gap(251),AYUG01102315.1:1..34962,
            gap(1439),AYUG01102316.1:1..870,gap(168),AYUG01102317.1:1..20924,
            gap(3979),AYUG01102318.1:1..11682,gap(25),AYUG01102319.1:1..27694,
            gap(286),AYUG01102320.1:1..5340,gap(144),AYUG01102321.1:1..23684,
            gap(1684),AYUG01102322.1:1..917,gap(310),AYUG01102323.1:1..1125,
            gap(137),AYUG01102324.1:1..2420,gap(1750),AYUG01102325.1:1..13769,
            gap(78),AYUG01102326.1:1..2726,gap(742),AYUG01102327.1:1..18232,
            gap(433),AYUG01102328.1:1..12174,gap(131),AYUG01102329.1:1..24661,
            gap(96),AYUG01102330.1:1..3558,gap(41),AYUG01102331.1:1..746,
            gap(2111),AYUG01102332.1:1..4984,gap(212),AYUG01102333.1:1..10262,
            gap(221),AYUG01102334.1:1..5854,gap(122),AYUG01102335.1:1..10422)
//