LOCUS KN122070 4514604 bp DNA linear CON 04-SEP-2014 DEFINITION Fukomys damarensis unplaced genomic scaffold scaffold188, whole genome shotgun sequence. ACCESSION KN122070 AYUG01000000 VERSION KN122070.1 DBLINK BioProject: PRJNA190641 BioSample: SAMN02339281 KEYWORDS WGS. SOURCE Fukomys damarensis (Damara mole-rat) ORGANISM Fukomys damarensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys. REFERENCE 1 (bases 1 to 4514604) AUTHORS Gladyshev,V.N. and Fang,X. TITLE The Damaraland mole rat (Fukomys damarensis) genome and evolution of African mole rats JOURNAL Unpublished REFERENCE 2 (bases 1 to 4514604) AUTHORS Gladyshev,V.N. and Fang,X. TITLE Direct Submission JOURNAL Submitted (19-NOV-2013) Department of Science and Technology, Beijing Genomics Institute, Shenzhen, 2nd Office Building, Beishan Industrial Zone, BeishanRoad,Yantian District, Shenzhen, Guangdong 518083, China COMMENT ##Genome-Assembly-Data-START## Assembly Method :: SOAPdenovo v. 1.06 Assembly Name :: DMR_v1.0 Genome Coverage :: 140x Sequencing Technology :: Illumina Hiseq 2000 ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..4514604 /organism="Fukomys damarensis" /mol_type="genomic DNA" /submitter_seqid="scaffold188" /db_xref="taxon:885580" /chromosome="Unknown" /sex="male" /tissue_type="liver" /geo_loc_name="USA" /collection_date="Nov-2011" assembly_gap 45001..45049 /estimated_length=49 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 101767..101916 /estimated_length=150 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 128303..129053 /estimated_length=751 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 174044..174054 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 188583..188592 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 196357..196383 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 200613..200725 /estimated_length=113 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 233114..233291 /estimated_length=178 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 246821..247722 /estimated_length=902 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 258729..258747 /estimated_length=19 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <293305..>293808 /locus_tag="H920_05009" mRNA <293305..>293808 /locus_tag="H920_05009" /product="Cyclin-I" CDS 293305..293808 /locus_tag="H920_05009" /codon_start=1 /product="Cyclin-I" /protein_id="KFO33565.1" /db_xref="UniProtKB/Swiss-Prot:Q14094" /translation="MEKLIPDWLPLINELLQKAQMDSSQLIHCWDLVAHHLSTLQSFL SLNSVYLYHPLKHTLVTCYKGVFRLHPSFVSGPNISKDNSKPEVPVRGTVAFYSHLPA ASGCKHTFAKCKVEEMEVDDFYDGIKWLYNEDNTAKNVASLCGTDLSRHKGHASSCSP LQPISVM" assembly_gap 319709..319750 /estimated_length=42 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 329673..333917 /estimated_length=4245 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 456214..456227 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 463218..463240 /estimated_length=23 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 463872..463948 /estimated_length=77 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 482986..483265 /estimated_length=280 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 493573..493855 /estimated_length=283 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 559362..559449 /estimated_length=88 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 560445..560457 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 634055..635627 /estimated_length=1573 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 645346..645361 /estimated_length=16 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 679753..679903 /estimated_length=151 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 732519..733115 /estimated_length=597 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 767703..767894 /estimated_length=192 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 839543..839662 /estimated_length=120 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 912113..912187 /estimated_length=75 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 925498..925592 /estimated_length=95 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 943290..943341 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 983668..984056 /estimated_length=389 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1003039..1003065 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1010144..1010269 /estimated_length=126 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1173836..1174728 /estimated_length=893 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1210271..1210374 /estimated_length=104 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1219267..1219305 /estimated_length=39 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1254484..1254544 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1284547..1284605 /estimated_length=59 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1340959..1341069 /estimated_length=111 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1356178..1356198 /estimated_length=21 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1395342..1395416 /estimated_length=75 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1413455..1413509 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1420852..1420869 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1480422..1480553 /estimated_length=132 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1604875..1605108 /estimated_length=234 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1621037..1621165 /estimated_length=129 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1631284..1631398 /estimated_length=115 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1645333..1645354 /estimated_length=22 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1661308..1661363 /estimated_length=56 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1665280..1665303 /estimated_length=24 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1679918..1680238 /estimated_length=321 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1687485..1687584 /estimated_length=100 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1759038..1759209 /estimated_length=172 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1778778..1778900 /estimated_length=123 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1790367..1790377 /estimated_length=11 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1791932..1792369 /estimated_length=438 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1820824..1820871 /estimated_length=48 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1848153..1848245 /estimated_length=93 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1895594..1900572 /estimated_length=4979 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1920936..1920955 /estimated_length=20 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1926750..1926837 /estimated_length=88 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1947507..1947520 /estimated_length=14 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1974331..1974504 /estimated_length=174 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 1990919..1991089 /estimated_length=171 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2040398..2040893 /estimated_length=496 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2063558..2063854 /estimated_length=297 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2082912..2088055 /estimated_length=5144 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <2100145..>2100719 /locus_tag="H920_05010" mRNA join(<2100145..2100396,2100666..>2100719) /locus_tag="H920_05010" /product="Thioredoxin-dependent peroxide reductase, mitochondrial" CDS join(2100145..2100396,2100666..2100719) /locus_tag="H920_05010" /note="GO_function: GO:0016209 - antioxidant activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0051920 - peroxiredoxin activity [Evidence IEA]" /codon_start=1 /product="Thioredoxin-dependent peroxide reductase, mitochondrial" /protein_id="KFO33566.1" /db_xref="InterPro:IPR000866" /db_xref="InterPro:IPR012336" /db_xref="InterPro:IPR019479" /db_xref="UniProtKB/Swiss-Prot:P20108" /translation="MNIALLSDLTKQISQDYGVLLEGPGIALRGLFIIDPNGVIKHLS VNDLPVGRSVEETLRLVKAFQFVETHGEVCPANWTPDSPTIKPSPTASKEYFEKVHQ" assembly_gap 2137119..2137215 /estimated_length=97 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2144229..2144298 /estimated_length=70 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2152744..2153429 /estimated_length=686 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2225991..2226500 /estimated_length=510 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2241677..2241712 /estimated_length=36 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2289459..2289479 /estimated_length=21 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2299660..2300709 /estimated_length=1050 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2360736..2360877 /estimated_length=142 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2521055..2521081 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2526792..2526804 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2527286..2527302 /estimated_length=17 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2556311..2556448 /estimated_length=138 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2578582..2578747 /estimated_length=166 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2592144..2597560 /estimated_length=5417 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2618003..2618065 /estimated_length=63 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2619740..2620230 /estimated_length=491 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2626730..2626810 /estimated_length=81 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2654581..2656276 /estimated_length=1696 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2684555..2684733 /estimated_length=179 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2689006..2691073 /estimated_length=2068 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2696880..2697497 /estimated_length=618 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2709915..2710320 /estimated_length=406 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2719063..2719118 /estimated_length=56 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2726724..2726790 /estimated_length=67 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2730579..2730642 /estimated_length=64 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2751891..2752992 /estimated_length=1102 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2761330..2761386 /estimated_length=57 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2766270..2766362 /estimated_length=93 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 2907139..2907950 /estimated_length=812 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3062892..3062912 /estimated_length=21 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3092526..3092781 /estimated_length=256 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3116606..3116617 /estimated_length=12 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3125360..>3250884) /locus_tag="H920_05011" mRNA complement(join(<3125360..3125943,3168615..3168787, 3191958..3192016,3244753..3245080,3245812..3245952, 3248738..>3250884)) /locus_tag="H920_05011" /product="Protocadherin-19" CDS complement(join(3125360..3125943,3168615..3168787, 3191958..3192016,3244753..3245080,3245812..3245952, 3248738..3250884)) /locus_tag="H920_05011" /note="GO_component: GO:0016020 - membrane [Evidence IEA]; GO_function: GO:0005509 - calcium ion binding [Evidence IEA]; GO_process: GO:0007156 - homophilic cell adhesion [Evidence IEA]" /codon_start=1 /product="Protocadherin-19" /protein_id="KFO33567.1" /db_xref="InterPro:IPR002126" /db_xref="InterPro:IPR013164" /db_xref="InterPro:IPR015919" /db_xref="UniProtKB/Swiss-Prot:Q80TF3" /translation="MESLLLPVLLLLAILWTQAAALINLKYSVEEEQRAGTVIANVAK DAREAGFALDPRQASAFRVVSNSAPHLVDINPSSGLLVTKQKIDRDLLCRQSPKCIIS LEVMSSSMEICVIKVEIKDLNDNAPTFPAAQIELEISEAASPGTRIPLDSAYDPDSGS FGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDREIQSHYNFRITALDGGDPPH LGTVGLSIKVTDSNDNNPVFGESTYSVSVPENSPPNTPVIRLNASDPDEGTNGQVVYS FYGYVNDRTRELFQIDPHSGLVTVTGALDYEEGNVYELDVQAKDLGPNSIPAHCKVTV SVLDTNDNPPVINLLSVNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLGNV PFRLQEYESFSTILVDGRLDREQHDQYNLTIQARDSGVPMLQSAKSFTVRITDENDNH PHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSYQIVPSQVRDMPVFTYVSI NPNSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNTPVITAP PLINGTAEVYIPRNAGIGYLVTVVKADDYDEGENGRVTYGMTEGDRGFFEIDQVNGEI RTTRTFGENSKASYELIVVAQDHGKTSLSATALVLIYLSPALDAQESMGSMNLSLIFI IALGSIAGILFVTMIFVAIKCKRDNKEIRTYNCSNCLTITCLLGCFIKGQNSKCLHCI SVSPISEEQDKKAEETVSLRGKRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETDK MNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRNPTASHIYHHSFDSQ GPQQPDLIINGVPLPETENYAFDSNYVNSRAHLIKSSSTFKDLEGNSLKDSGHEESDQ TDSEHDVHRSLYCDTAVNDVLNASVTSMGSQMPDHDQNEGFHCREECRILGHSDRCWM PRNLMPTRSKSPEHMRNIITLSIEATAADVEAYDDCGPTKRTFATFGKDVNQRPAEER PTLKSKRSVDVTICSPKVNSAIREAGNGCEAISPVTSPLHLKSPLPTKPSVSYMVALG PPTRNLEPYISSGPSRPSEAEPRGADNVMHEVNTILKEGRDKESPRVKRLKDIVL" assembly_gap 3185829..3186153 /estimated_length=325 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3193807..3193885 /estimated_length=79 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3196609..3197864 /estimated_length=1256 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3245272..3245332 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3248384..3248438 /estimated_length=55 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3250925..3251286 /estimated_length=362 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3267717..3269498 /estimated_length=1782 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3271258..3271314 /estimated_length=57 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3283690..3283707 /estimated_length=18 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3322603..3322867 /estimated_length=265 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3323306..3324070 /estimated_length=765 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3417239..3419070 /estimated_length=1832 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3450211..3450241 /estimated_length=31 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <3476964..>3494536 /locus_tag="H920_05012" mRNA join(<3476964..3477011,3477177..3477308,3488436..3488576, 3488785..3488886,3492124..3492277,3493862..3494028, 3494327..>3494536) /locus_tag="H920_05012" /product="Tenomodulin" CDS join(3476964..3477011,3477177..3477308,3488436..3488576, 3488785..3488886,3492124..3492277,3493862..3494028, 3494327..3494536) /locus_tag="H920_05012" /codon_start=1 /product="Tenomodulin" /protein_id="KFO33568.1" /db_xref="InterPro:IPR007084" /db_xref="UniProtKB/Swiss-Prot:Q9H2S6" /translation="MAKNRPENCEDCHILNAETFKSKKICKSLKICVLLFSILALTLI IWFGASKHLRLEAPKKTYDMEQTFYSNGEKKKIHMEIDPMARTEIFRSGNGTEETWEV HDFKNGYTGIFFVGLQKCFIKTQIKVIPEFSEPEEEIDENEEITTTFFEQSVIWVPAE KPIENRDFLKNSKILEICDNVTMYWINPTLIAVSELQDFEEDGEDPHFPSNGEKGIEQ NEQWVVPQVKVEKTRHTRQASEEDLPINDYTENGIEFDPMLDERGYCCIYCRRGNRYC RRVCEPLLGYYPYPYCYQGGRVICRVIMPCNWWVARMLGRV" assembly_gap 3537342..3537393 /estimated_length=52 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3544009..3544104 /estimated_length=96 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <3557218..>3578593 /locus_tag="H920_05013" mRNA join(<3557218..3557299,3562300..3562380,3570325..3570516, 3572582..3572758,3573050..3573176,3573332..3573453, 3574488..3574667,3575016..3575149,3577287..3577408, 3578413..>3578593) /locus_tag="H920_05013" /product="Sushi repeat-containing protein SRPX2" CDS join(3557218..3557299,3562300..3562380,3570325..3570516, 3572582..3572758,3573050..3573176,3573332..3573453, 3574488..3574667,3575016..3575149,3577287..3577408, 3578413..3578593) /locus_tag="H920_05013" /codon_start=1 /product="Sushi repeat-containing protein SRPX2" /protein_id="KFO33569.1" /db_xref="InterPro:IPR000436" /db_xref="InterPro:IPR003410" /db_xref="InterPro:IPR016060" /db_xref="UniProtKB/Swiss-Prot:O60687" /translation="MAGELTQRRALSLLFFLIPTVTSTWYAGSGYYPDESYNEVHTEE IPQTPPLDYQVPQWCYTLNIQDGEATCYSPRGGNYHSSLGTRCELSCDRGFRLIGRRS VQCLPSRRWSGTAYCRQIRCHALPFITSGTYTCTNGVLLDSRCDYSCSRGYHLEGDRS RICMEDGRWSGGEPVCVDIDPPKIHCPHSREKMAEPEKLTARVYWDPPLVKDSADGTI TRVTLRGPEPGFQFPEGEHVIRYTAYDRAYNRASCKFIVKVQVRRCPILKPPQHGYLT CTSVGNNYGATCEYHCDGGYERQGTPSRVCQSSRQWSGAPPICTPMKINVNVNSAAGL LDQFYEKQRLLIISAPDPSNRYYKMQISMLQQSTCGLDLRHVTIIELVGQPPQDVGRI QEQQLSSSIIEELRQFQHLTRSYFNMVLIDKQGIDRERYMEPVTPEEIFTFIDDYLLS NQEMIQRREQRDMCE" assembly_gap 3559079..3560128 /estimated_length=1050 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3583383..>3603036) /locus_tag="H920_05014" mRNA complement(join(<3583383..3583531,3585292..3585500, 3586236..3586335,3588044..3588152,3592026..3592187, 3592659..3592761,3593044..3593222,3594290..3594397, 3596789..3596892,3596993..3597080,3597531..3597606, 3598110..3598211,3598558..3598631,3602911..>3603036)) /locus_tag="H920_05014" /product="Synaptotagmin-like protein 4" CDS complement(join(3583383..3583531,3585292..3585500, 3586236..3586335,3588044..3588152,3592026..3592187, 3592659..3592761,3593044..3593222,3594290..3594397, 3596789..3596892,3596993..3597080,3597531..3597606, 3598110..3598211,3598558..3598631,3602911..3603036)) /locus_tag="H920_05014" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="Synaptotagmin-like protein 4" /protein_id="KFO33570.1" /db_xref="InterPro:IPR000008" /db_xref="InterPro:IPR008973" /db_xref="InterPro:IPR018029" /db_xref="UniProtKB/Swiss-Prot:Q96C24" /translation="MVGKNVGSSSEDGGHTHAMAVLGLLAATLLCELVVLAQDRTLPE RAGGIDIEGEKRKKKLIQPSEENVPFDVPKLKSGKSALEAESESLDSYTADSDSTSRG DSLDKSGLFPEWKKMSAPRSQVEKETQPVGQNVVSVDEDEMIFKNTRKIFRPSDYTKS VIDLRPEDTAHESSSMGDRSKSVPGLRVNIEEEEEEEEEEEEDIDHLVKLHRQKLARN SMQSGSSMSTIGSMMSIYSEAGDFGNIFVTGKIAFSLKFEQQTQTLVIHVKECHQLAF ADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDEILRYEIPESLLVQRTLQ FSVWHHGRFGRNTFLGEAEVHMDSWKLNKKLDHCLPLHGKISPESLAGLPSHKGELVV SLKYIPSSKLPVGGNWKKSKGVEGGELQVWIKEAKNLTAAKSGGTSDSFVKGYLLPMR NKASKRKTPVMKKTLNPHYNHTFVYSGMRLEDLQHMCLELTVWDREPLTSNDFLGGVR LGVGTGISNGEIVDWMDSTGEEVSLWQKMRQYPGSWAEGTLQLRSSMAKQKLGL" assembly_gap 3603123..3603442 /estimated_length=320 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3604435..>3621406) /locus_tag="H920_05015" mRNA complement(join(<3604435..3604868,3620607..3620716, 3620852..3621067,3621297..>3621406)) /locus_tag="H920_05015" /product="Synaptotagmin-like protein 4" CDS complement(join(3604435..3604868,3620607..3620716, 3620852..3621067,3621297..3621406)) /locus_tag="H920_05015" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_function: GO:0003725 - double-stranded RNA binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]; GO_function: GO:0017137 - Rab GTPase binding [Evidence IEA]; GO_process: GO:0006886 - intracellular protein transport [Evidence IEA]" /codon_start=1 /product="Synaptotagmin-like protein 4" /protein_id="KFO33571.1" /db_xref="InterPro:IPR001159" /db_xref="InterPro:IPR010911" /db_xref="InterPro:IPR011011" /db_xref="UniProtKB/Swiss-Prot:Q96C24" /translation="MSEILDLSFLSEMERDLIINVLQRDEELRKADEKRIRRLKSELL EIKRKGAKRGSQHYSDRTCARCQENLGRLTPKTNICRGCNHLVCRDCRIQESNGTWRC KVCTKEIELKKATGDWFYDQKVNRFAYRTGSEIIRMSLRRKPTVPPLLYQVELSVGGQ QFNGKGKTRQAGKHAAAAKAWRILQNEPLTKRLEMNGREKEKSLNKSEISEVFEIALN WNLPVNFKVAWESGPLHMKNFVTRISVGEFVGEGEGKIKKISKKNTAIAILEELKKLP PLPTVEQMKPRIK" assembly_gap 3636466..3636487 /estimated_length=22 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3656607..3656667 /estimated_length=61 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3675849..3675973 /estimated_length=125 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3691825..3691855 /estimated_length=31 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <3696294..>3717110 /locus_tag="H920_05016" mRNA join(<3696294..3696351,3697396..3697474,3697792..3697961, 3698622..3698758,3699069..3699188,3699303..3699440, 3700696..3700819,3705546..3705608,3710874..3711015, 3711863..3712038,3712309..3712601,3716144..3716254, 3716988..>3717110) /locus_tag="H920_05016" /product="Cleavage stimulation factor subunit 2" CDS join(3696294..3696351,3697396..3697474,3697792..3697961, 3698622..3698758,3699069..3699188,3699303..3699440, 3700696..3700819,3705546..3705608,3710874..3711015, 3711863..3712038,3712309..3712601,3716144..3716254, 3716988..3717110) /locus_tag="H920_05016" /note="GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]" /codon_start=1 /product="Cleavage stimulation factor subunit 2" /protein_id="KFO33572.1" /db_xref="InterPro:IPR000504" /db_xref="UniProtKB/Swiss-Prot:Q5RDA3" /translation="MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVS FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELK SLGTGAPVIESPYGETISPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARN MLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQTNIPTLITGNPQPVHGAGPGSGAN VSVNQQNPQAPQAQTLGGMHVNGAPPLMQASMQGGVPAPGQIPASVTGPGPGSLAPGG GMQPQLGMPGGGPVPIERGQVPMQDPRAAMQRGSLPANVPTPRGLLGDAPNDPRGGTL LSVTGEVEPRGYLGPPHQGPPMHHVPGHEGRGPPPHEMRGGPLAEPRPLMAEPRGPML DQRGPPLDGRGGRDPRGIDARGMEARAMEARGLDARGMDARAMEARAMEARAMEARAM EARAMEVRGMEARGMDTRGPVPGPRGPIPSGIQGPSPINIGAVGPQGARQVPVMQGTG MQGASMQGGSQPGGFSPGQNQVTPQDHEKAALIMQVLQLTADQIAMLPPEQRQSILIL KEQIQKSTGAP" gene complement(<3722136..>3735250) /locus_tag="H920_05017" mRNA complement(join(<3722136..3722262,3725101..3725225, 3725426..3725572,3725990..3726152,3726363..3726598, 3727337..3727429,3732625..3732757,3732844..3733025, 3733129..3733280,3733589..3733673,3733898..3734008, 3735206..>3735250)) /locus_tag="H920_05017" /product="NADPH oxidase 1" CDS complement(join(3722136..3722262,3725101..3725225, 3725426..3725572,3725990..3726152,3726363..3726598, 3727337..3727429,3732625..3732757,3732844..3733025, 3733129..3733280,3733589..3733673,3733898..3734008, 3735206..3735250)) /locus_tag="H920_05017" /note="GO_component: GO:0016020 - membrane [Evidence IEA]; GO_component: GO:0016021 - integral to membrane [Evidence IEA]; GO_function: GO:0005506 - iron ion binding [Evidence IEA]; GO_function: GO:0009055 - electron carrier activity [Evidence IEA]; GO_function: GO:0016491 - oxidoreductase activity [Evidence IEA]; GO_function: GO:0050660 - FAD or FADH2 binding [Evidence IEA]; GO_process: GO:0055114 - oxidation-reduction process [Evidence IEA]" /codon_start=1 /product="NADPH oxidase 1" /protein_id="KFO33573.1" /db_xref="InterPro:IPR000778" /db_xref="InterPro:IPR013112" /db_xref="InterPro:IPR013121" /db_xref="InterPro:IPR013130" /db_xref="InterPro:IPR017927" /db_xref="InterPro:IPR017938" /db_xref="UniProtKB/Swiss-Prot:Q9WV87" /translation="MENGRAALVDYVAFITALAVARASARCLNFNSMLILVPVCRNLL SFLRGTCSFCNRTLRKPLDHNLTFHKLVAYMICTFTAIHIIAHLFNFERYSRSQQATG VSLSSILSNLSHIKKDEDSWLNPIWSPNMTVMHVTFTSIAGLTGVIGTIALILMVTSA MEFIRRNYFELFWIAHHLFIIYFLCLALHGISGIVRGQTKESMDESPPHKCALSFEKW GHHDSGCRHPRFKGNPPESWKWILAPLILYFFERILQLFRSQQRVVITKVVMHPSKVL ELQMMKQGFRMEVGQYILVKCPSISHLEWHPFTLTSAPEEDFFSIHIRAAGDWTETLI RAFEQQHSPVPRIKVDGPFGTVSEDVFQYEVAVLVGAGIGVTPFASILKSIWYKFQCA DQNLKTEKIYFYWICRETGAFAWFNDLLISLEREMEELGKVGFLNYRLFLTGWDSNIA GHAALNFDKATDILTGLKQKTYFGRPKWDNEFSAIATAHPKSVVGVFLCGPTTLAKNL SKCCHRYSSMDPRKVQFYFNKENF" assembly_gap 3730595..3730664 /estimated_length=70 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3791436..>3820045) /locus_tag="H920_05018" mRNA complement(join(<3791436..3792181,3819760..>3820045)) /locus_tag="H920_05018" /product="XK-related protein 2" CDS complement(join(3791436..3792181,3819760..3820045)) /locus_tag="H920_05018" /codon_start=1 /product="XK-related protein 2" /protein_id="KFO33574.1" /db_xref="InterPro:IPR018629" /db_xref="UniProtKB/Swiss-Prot:Q6PP77" /translation="MLYSCRCLEAMIKYLTLWKKEGQEEPYVSLTRKKMLINGEEVLI EWEVGHSIRTLAMHRNAYKRMSQIQAFLGSVPQLTYQLYVTLISAEVPLSRAVLMTFS LISVTYGATLCNMLAIQIKYDDYKIRLGPLEVLCITIWRTLEITSRLMILVLFSATLK LKALPFLVLNFLIILFEPWVMFWRSGAQMPNNIEKNFSRVGTLVVLISVTILYAGINF SCWSALQLRLADRDLVDKGQNWGHMGLHYSVRLVENVIMVLVFKFFGVKVLLNYCHSF IALQLIIAYLISIVFMLLFFQYLHPLRSLFSHNVVDYLHCVCCHQHHQGRAENSEPPF EAETRQNIV" assembly_gap 3825438..3826224 /estimated_length=787 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3893570..3893596 /estimated_length=27 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3894793..3899668 /estimated_length=4876 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3904573..3904630 /estimated_length=58 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3932623..3933408 /estimated_length=786 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<3937206..>3937478) /locus_tag="H920_05019" mRNA complement(<3937206..>3937478) /locus_tag="H920_05019" /product="Tropomyosin alpha-4 chain" CDS complement(3937206..3937478) /locus_tag="H920_05019" /codon_start=1 /product="Tropomyosin alpha-4 chain" /protein_id="KFO33575.1" /db_xref="InterPro:IPR000533" /db_xref="UniProtKB/Swiss-Prot:Q6IRU2" /translation="MERAEEHAEVSELKCGDREEELKNVTKNLKSLEVASEKEDKYEE GIKLLSDKLKEAETRAEFAERMVAKLEKTTDDPAKEENLDTGSDAK" assembly_gap 3943921..3943946 /estimated_length=26 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3963948..3964081 /estimated_length=134 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3971018..3971956 /estimated_length=939 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3986356..3986841 /estimated_length=486 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3990966..3991034 /estimated_length=69 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3997761..3999020 /estimated_length=1260 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 3999667..4000357 /estimated_length=691 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4010700..>4021422 /locus_tag="H920_05020" mRNA join(<4010700..4010819,4021039..>4021422) /locus_tag="H920_05020" /product="Transmembrane protein 35" CDS join(4010700..4010819,4021039..4021422) /locus_tag="H920_05020" /codon_start=1 /product="Transmembrane protein 35" /protein_id="KFO33576.1" /db_xref="UniProtKB/Swiss-Prot:Q4R5F4" /translation="MASPRTVTIVALSVALGLFFVFMGTIKLTPRLSKDAYSEMKRAY KSYVRALPLLKKMGINSILLRKSIGALEVACGIVMTLVPGRPKDVANFFLLLLVLAVL FFHQLVGDPLKRYAHALVFGILLTCRLLIARKPEDRSSEKKPLPRNSEEQPSLYEKAP QGKVKVS" gene <4027100..>4204191 /locus_tag="H920_05021" mRNA join(<4027100..4027310,4028451..4028588,4032075..4032193, 4032482..4032589,4084643..4084737,4088070..4088205, 4089078..4089202,4090140..4090188,4090291..4090509, 4106836..4106877,4168623..4168801,4169300..4169312, 4173214..4173377,4175102..4175258,4177335..4177455, 4178948..4179216,4179607..4179753,4180183..4180261, 4182344..4182404,4182719..4182780,4185357..4185431, 4186475..4186676,4186897..4186982,4188959..4189116, 4189445..4189611,4191933..4192044,4192987..4193123, 4193441..4193506,4193751..4193816,4194669..4194812, 4198831..4199068,4203619..4203739,4204067..>4204191) /locus_tag="H920_05021" /product="Dystrophin-related protein 2" CDS join(4027100..4027310,4028451..4028588,4032075..4032193, 4032482..4032589,4084643..4084737,4088070..4088205, 4089078..4089202,4090140..4090188,4090291..4090509, 4106836..4106877,4168623..4168801,4169300..4169312, 4173214..4173377,4175102..4175258,4177335..4177455, 4178948..4179216,4179607..4179753,4180183..4180261, 4182344..4182404,4182719..4182780,4185357..4185431, 4186475..4186676,4186897..4186982,4188959..4189116, 4189445..4189611,4191933..4192044,4192987..4193123, 4193441..4193506,4193751..4193816,4194669..4194812, 4198831..4199068,4203619..4203739,4204067..4204191) /locus_tag="H920_05021" /note="GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0008270 - zinc ion binding [Evidence IEA]" /codon_start=1 /product="Dystrophin-related protein 2" /protein_id="KFO33577.1" /db_xref="InterPro:IPR000433" /db_xref="InterPro:IPR001202" /db_xref="InterPro:IPR002017" /db_xref="InterPro:IPR012485" /db_xref="InterPro:IPR015153" /db_xref="InterPro:IPR015154" /db_xref="InterPro:IPR018159" /db_xref="UniProtKB/Swiss-Prot:Q13474" /translation="MSPQKRVKNSQAQKRTSQGRNTYQTSLSAWKVKEKPSDSNIWKQ NPVEAHEHVDDQAEDTLQMAVGYFEKGPIKTSQRKNTILEKHLKTVENVAWINGLAPE TIDILLNVALSGKFGNAINTRILKCMIPTTLISEDSVVKAISWLCVGKCSGNTKVLFY RWLVAMFDFIDHKEQINLLYGFFFASLQDDALCSVLHSLKELLQNWLLWLSMDIHMKP TMSSPLETTLGGSMNSVATLIHYVGWLSTTAMRLENNSTFLLHFVLDFYKKVCDIYIN HDLPLVVLLPPGIFYASLLSLDTSILNQLCYIMHRYHKNLIAAKKNELVQKAKSEFSF SSKTCQQFNHYLTTMVGCLWTSKPFEKGISIDPKILEKSGVVKFKNSLNIVHHPSLLS YAATFVLQESPEERTINMSSIQELNGQQLVWCPSSSLHDSWFLCNLWSCRDALTPSHD VMNGGLLTGSIIVAASDAPAPSLRNMVMVRAAITAPALPWDGAGVPCLSPKLLNGSFG AVGPLEPSAMNLCWNEIKKKSHNLRARLEAFSDHSGKLQLLLQEIIDWLSQKDEELSA QLPLQGDVALVQQEKETHAAFMEEVKSRGPYVYSVLESAQAFLSQHPFEELEEPHSES KNTSPRHRIQNLSRFVWKQATVASELWEKLTARCVEQHRHIERTLEQLLEIQGAMEEL STTLTQAEGVRGTWEPIGDLFIDSLPDHIQTIKLFKEEFSPMKDGVKLVNDLAHQLAI SDVHLSMENSRALEQINVGWKQLQVSVGERLKQLQDAHRDFGPGSQHFLSSSVQVPWE RAISPNKVPYYINHQAQTTCWDHPKMTELYQTLADLNNIKFSAYRTAMKLRRVQKALR LDLVNLTTALEIFNEHDLQASEHVMDVVEVIHCLTALYERLEEERGILVNVPLCVDMT LNWLLNVFDSGRSGKMRALSFKTGIACLCGTEVKEKLQYLFSQVANSGSQCDQRHLGV LLHEAIQVPRQLGEVAAFGGSNVEPSVRSCFRFSTGKPVIEASQFLEWVNLEPQSMVW LAVLHRVTIAEQVKHQTKCSICRQCPIKGFRYRSLKQFNVDICQTCFLTGRASKGNKL HYPIMEYYTQTTSSENMRDFATTLKNKFRSKHYFSKHPQRGYLPVQSVLEADYSETPA SSPMLPHADTHSRIEHFASRLAEMESQNCSFFNDSLSPDDSIDEDQYLLRHSSPITDR EPAFGQQVPCSVATESKGELEKILAHLEDENRILQGELRRLKWQHEEAAEAPTLAEDS TEATLDHHNEELLAEARILRQHKSRLEMRMQILEDHNKQLESQLQRLRELLLQPPTES DGNGSAGSSLASSPQQSEGSHAQEKGQTTPDTEAADDVGSKSQNLSLCLEDIMEKLRH AFPSVQSSDVTANTLLAS" assembly_gap 4040197..4040226 /estimated_length=30 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4041310..4042616 /estimated_length=1307 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4073985..4074069 /estimated_length=85 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4113250..4113401 /estimated_length=152 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4126649..4126986 /estimated_length=338 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4170184..4170333 /estimated_length=150 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<4207214..>4227714) /locus_tag="H920_05022" mRNA complement(join(<4207214..4207324,4217473..4217585, 4218480..4218578,4223113..4223239,4223824..4223957, 4226803..4226881,4227649..>4227714)) /locus_tag="H920_05022" /product="Transcription initiation factor TFIID subunit 7-like" CDS complement(join(4207214..4207324,4217473..4217585, 4218480..4218578,4223113..4223239,4223824..4223957, 4226803..4226881,4227649..4227714)) /locus_tag="H920_05022" /note="GO_component: GO:0005669 - transcription factor TFIID complex [Evidence IEA]; GO_function: GO:0016251 - general RNA polymerase II transcription factor activity [Evidence IEA]; GO_process: GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]" /codon_start=1 /product="Transcription initiation factor TFIID subunit 7-like" /protein_id="KFO33578.1" /db_xref="InterPro:IPR006751" /db_xref="UniProtKB/Swiss-Prot:Q5H9L4" /translation="MSKSQDKLPLEIENQFILRLPPEHASTVRNIIHSRHVTRKDKIK IDLASDECRAVVNVEDVSLSAKLVDLPCVVGSLKTFDKKTFYKTADISQMLVCSAESG DVQSSLEGSSSTDPSETRNKERETEKKYIWKHGRWEVIADDETKEIESQGCIPGSPVS PGASGYKQVMEIQKHIRYKEKKLRDIQNKAQRQKNIIRKVENLALKNFSLLWPTSSVF GTSETNRVLCMKYFLIWALMETDT" assembly_gap 4208540..4208640 /estimated_length=101 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4230827..4231107 /estimated_length=281 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4239881..4240153 /estimated_length=273 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<4250511..>4252664) /locus_tag="H920_05023" mRNA complement(join(<4250511..4250672,4252533..>4252664)) /locus_tag="H920_05023" /product="hypothetical protein" CDS complement(join(4250511..4250672,4252533..4252664)) /locus_tag="H920_05023" /note="GO_component: GO:0042719 - mitochondrial intermembrane space protein transporter complex [Evidence IEA]; GO_process: GO:0006626 - protein targeting to mitochondrion [Evidence IEA]; GO_process: GO:0045039 - protein import into mitochondrial inner membrane [Evidence IEA]" /codon_start=1 /product="hypothetical protein" /protein_id="KFO33579.1" /db_xref="InterPro:IPR004217" /db_xref="UniProtKB/Swiss-Prot:Q3ZBS8" /translation="MDSSSSSSAAGLGTVDPQLQHFIEVETQKQRFQQLVHQMTELCW EKCMDKPGPKLDSRAEACFVNCVERFIDTSQFILNRLEQTQKSKPVFSESLSD" gene complement(<4254005..>4275933) /locus_tag="H920_05024" mRNA complement(join(<4254005..4254076,4255977..4256134, 4257206..4257324,4257770..4257834,4258811..4259027, 4259536..4259707,4260332..4260406,4261161..4261288, 4261676..4261755,4262016..4262070,4262665..4262727, 4263105..4263292,4264399..4264466,4264888..4265016, 4269910..4269991,4272566..4272634,4275182..4275280, 4275793..>4275933)) /locus_tag="H920_05024" /product="Tyrosine-protein kinase BTK" CDS complement(join(4254005..4254076,4255977..4256134, 4257206..4257324,4257770..4257834,4258811..4259027, 4259536..4259707,4260332..4260406,4261161..4261288, 4261676..4261755,4262016..4262070,4262665..4262727, 4263105..4263292,4264399..4264466,4264888..4265016, 4269910..4269991,4272566..4272634,4275182..4275280, 4275793..4275933)) /locus_tag="H920_05024" /note="GO_function: GO:0004672 - protein kinase activity [Evidence IEA]; GO_function: GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_process: GO:0006468 - protein phosphorylation [Evidence IEA]; GO_process: GO:0023034 - intracellular signaling pathway [Evidence IEA]" /codon_start=1 /product="Tyrosine-protein kinase BTK" /protein_id="KFO33580.1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR000980" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR001452" /db_xref="InterPro:IPR001562" /db_xref="InterPro:IPR001849" /db_xref="InterPro:IPR002290" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR020635" /db_xref="UniProtKB/Swiss-Prot:Q06187" /translation="MAAVILESIFLKRSQQKKKTSPLNFKKRLFLLTMQKLSYYEYDF ERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPF QVVYDEGPLYVFSPTEELRKRWIHQLKNVIRYNSDLVQKYHPCFWIDGQYLCCSQTAK NAMGCQILENRNGSLKPGSSHRKTKKPLPPTPEEDQILKKPLPPEPTAAPVSASELKK VVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAEDSI EMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSSKAGKYTVSVFAKSTGDPQGVIRHY VVCSTPQSQYYLAEKHLFSTIPELINYHQHNSAGLISRLKYPVSQQNKNAPSTAGLGY GSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIREGSMSEDEFIEEAKVMM NLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEA MEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPP EVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASE RVYTIMYSCWHEKADERPTFKILLSNILDVMDEES" assembly_gap 4277258..4277267 /estimated_length=10 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4279773..4279902 /estimated_length=130 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4290213..>4292853 /locus_tag="H920_05025" mRNA join(<4290213..4290323,4290669..4290774,4291259..4291326, 4292417..4292539,4292833..>4292853) /locus_tag="H920_05025" /product="60S ribosomal protein L36a" CDS join(4290213..4290323,4290669..4290774,4291259..4291326, 4292417..4292539,4292833..4292853) /locus_tag="H920_05025" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]" /codon_start=1 /product="60S ribosomal protein L36a" /protein_id="KFO33581.1" /db_xref="InterPro:IPR000552" /db_xref="InterPro:IPR011332" /db_xref="UniProtKB/Swiss-Prot:P83883" /translation="MVSPSDCHEVRPRISYILPFPARPLSFRADNLAPASMVNVPKTR RTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKI VLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF" gene complement(<4294995..>4304776) /locus_tag="H920_05026" mRNA complement(join(<4294995..4295276,4295890..4296087, 4296295..4296456,4298087..4298178,4298740..4298917, 4300712..4300886,4304583..>4304776)) /locus_tag="H920_05026" /product="Alpha-galactosidase A" CDS complement(join(4294995..4295276,4295890..4296087, 4296295..4296456,4298087..4298178,4298740..4298917, 4300712..4300886,4304583..4304776)) /locus_tag="H920_05026" /note="GO_function: GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO_process: GO:0005975 - carbohydrate metabolic process [Evidence IEA]" /codon_start=1 /product="Alpha-galactosidase A" /protein_id="KFO33582.1" /db_xref="InterPro:IPR000111" /db_xref="InterPro:IPR002241" /db_xref="InterPro:IPR017853" /db_xref="UniProtKB/Swiss-Prot:P06280" /translation="MKLRSGDQRQICTLMLRFLALVLSGILGARALNNGLAKTPTMGW LHWERFMCNLNCQEEPDSCISEQLFMQMAELMVSDGWKDVGYKYLCIDDCWMAPQRDS EDRLQADPQRFPGGIRRLANYVHSKGLKLGIYADVGNKTCAGFPGSFGHYDLDAQTFA DWGVDLLKFDGCYCDSIKHLENGYKYMSLALNRTGRSIVYSCEWPFYLRPFHKPNYTA IRQYCNHWRNFADVSDSWQSIKSILDWTSSNQEKIVDVAGPGGWNDPDMLVIGNFGLS WDQQVTQMALWAIMAAPLLMSNDLRQISPEAKALLQNKDVIAINQDPLGKQGYRLRKE ENIELWERPLSNLAWAIAVRNLQEIGGPCFYTIAIVSLGHGVACNPGCFITQLLPMKR ELGFYEWTSSLKTKINPTGTVLLRLEAAGMLQKN" gene <4308570..>4309919 /locus_tag="H920_05027" mRNA <4308570..>4309919 /locus_tag="H920_05027" /product="Heterogeneous nuclear ribonucleoprotein H2" CDS 4308570..4309919 /locus_tag="H920_05027" /note="GO_function: GO:0003676 - nucleic acid binding [Evidence IEA]" /codon_start=1 /product="Heterogeneous nuclear ribonucleoprotein H2" /protein_id="KFO33583.1" /db_xref="InterPro:IPR000504" /db_xref="InterPro:IPR012996" /db_xref="UniProtKB/Swiss-Prot:Q5RD26" /translation="MMLSTEGREGFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIR FIYTREGRPSGEAFVELESEDEVKLALKKDRETMGHRYVEVFKSNSVEMDWVLKHTGP NSPDTSNDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSMGEAFVQFA SQEIAEKALKKHKETTGHRYIEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRG YNSIGRGAGFERMRRGAYGGGYGGYDDYGGYNDGYGFGSDRFGRDLNYCFSGMSDHRY GDGGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVE FATHEDAVAAMAKDKANMQHSYVKLFLNSTAGTSGGGYDHSYVELFLNSTAGASGGAY GSQMMGGMGLSNQSSYGGPASQQLSGGYGGGYGGQSSMSGYDQVLQENSSDYQSNLA" assembly_gap 4345390..4345597 /estimated_length=208 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4354044..4354056 /estimated_length=13 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4354923..4356765 /estimated_length=1843 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4363267..4363382 /estimated_length=116 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4369797..4370225 /estimated_length=429 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4396626..4396689 /estimated_length=64 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4400074..4400218 /estimated_length=145 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4409769..4410098 /estimated_length=330 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene <4412916..>4414277 /locus_tag="H920_05028" mRNA <4412916..>4414277 /locus_tag="H920_05028" /product="Armadillo repeat-containing X-linked protein 1" CDS 4412916..4414277 /locus_tag="H920_05028" /note="GO_function: GO:0005488 - binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="Armadillo repeat-containing X-linked protein 1" /protein_id="KFO33584.1" /db_xref="InterPro:IPR000225" /db_xref="InterPro:IPR006911" /db_xref="InterPro:IPR016024" /db_xref="UniProtKB/Swiss-Prot:Q9P291" /translation="MGRTREAGCVAAGMVIGAGACYCVYRLTWRKDENEKIWDDDEEF SDTSEIGVETEKGAKNNVGVGVGAKPQCDTEAKAEVRLGLESGPGIKQGSHCGSQSRG GLEAKAKALFTILKEQASAKVGKGARIGNISGSRTLAPSLPCPGVRGGGCHPAKSGAR AGRKASGKSKGKARNKSTRALPTTWPVRRGKFNFPYKIDDILSTPDLQKVLNILERTN DPFIQEVALVTLGNNAAYSFNQNAIRELGGVPVIAKLIKTKDPIIREKTYNALNNLSV NAENQGKIKTYISQVCDDTVICRLDSAVQMAGLRLLTNMTVTNHYQHLLSYSFPDFFA LLFLGNHFTKIQIMKLIINFTENPAMTRELVSCKVPSELISLFNKEWDREILLNILTL FENINDNIKTEGLASSRKEFSRSSLFFLFKESGVCVKKIRALANHNDLVVKVKVLKVL TKL" gene complement(<4421878..>4422279) /locus_tag="H920_05029" mRNA complement(<4421878..>4422279) /locus_tag="H920_05029" /product="40S ribosomal protein S24" CDS complement(4421878..4422279) /locus_tag="H920_05029" /note="GO_component: GO:0005622 - intracellular [Evidence IEA]; GO_component: GO:0005840 - ribosome [Evidence IEA]; GO_function: GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO_process: GO:0006412 - translation [Evidence IEA]" /codon_start=1 /product="40S ribosomal protein S24" /protein_id="KFO33585.1" /db_xref="InterPro:IPR001976" /db_xref="InterPro:IPR012678" /db_xref="UniProtKB/Swiss-Prot:O42387" /translation="MNDTVAIWTRKFMTNRLLQRKQMVIDVLHPGKATVPKTKIREKL AKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKT SRKQRKERKNRMKKVRGTAKANVGAGKKPKE" assembly_gap 4424165..4424189 /estimated_length=25 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4455735..4455780 /estimated_length=46 /gap_type="within scaffold" /linkage_evidence="paired-ends" gene complement(<4484354..>4485205) /locus_tag="H920_05030" mRNA complement(<4484354..>4485205) /locus_tag="H920_05030" /product="Protein ARMCX6" CDS complement(4484354..4485205) /locus_tag="H920_05030" /codon_start=1 /product="Protein ARMCX6" /protein_id="KFO33586.1" /db_xref="InterPro:IPR006911" /db_xref="UniProtKB/Swiss-Prot:Q7L4S7" /translation="MGWMAAGLMIGAGACYCVYKLTLGKDDSDKSEEEEEEEWGDDQD LDDEESEIWLDFTTMARPWNEDEDWTQPGAPGGNEDRRSGGGKANRAHPTKQRPFPYE HKNTWSAQSFKNSASVLKLSKCPPTQGKPMFAEPKEAVFSLSHDVNRHLVNSSVTGDA IPAPHPTVNEKALCAPDNVNGSIENQGQIEMYANEVCRETVSHCCNSFLQQAGLNLLI SMTAINSMLAKSFSDLMFPLLSEGSGCAAKVQVLELLMVLSEKPVLAGELLGAQMLSP FVINKWK" gene <4493660..>4494799 /locus_tag="H920_05031" mRNA <4493660..>4494799 /locus_tag="H920_05031" /product="Armadillo repeat-containing X-linked protein 3" CDS 4493660..4494799 /locus_tag="H920_05031" /note="GO_function: GO:0005488 - binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]" /codon_start=1 /product="Armadillo repeat-containing X-linked protein 3" /protein_id="KFO33587.1" /db_xref="InterPro:IPR000225" /db_xref="InterPro:IPR006911" /db_xref="InterPro:IPR016024" /db_xref="UniProtKB/Swiss-Prot:Q5R9J3" /translation="MGYTRKVGWVTAGLVIGAGACYCIYRLTRGRKQNKEKMAEGGSG DVDDAGDCSGARYNDWSDDDGDTNDSKSIVWYPPWARIGTEAGTRARARARARATRAR RAVQKRASPNSDDTILSPQELQKVLCLVEMSEKPYILEAALIALGNNAAYAFNRDIIR DLGGLPIVAKILNTRDPIVKEKALIVLNNLSVNAENQRRLKIYMNQVCDDTITSRLNS SVQLAGLRLLTNMTVTNEYQHMLANSISDFFRLFSAGNEETKLQVLKLLLNLAENPAM TRELLRAQVPSSLGSLFNKKENKEVILKLLVVFENLNDNFRWEENEPTQNQFGEGSLF FFLKEFQVCADKVLGIEGHHDFLVKVKVGKFMAKLAEHMFPKIQE" assembly_gap 4496579..4496724 /estimated_length=146 /gap_type="within scaffold" /linkage_evidence="paired-ends" assembly_gap 4502586..4502607 /estimated_length=22 /gap_type="within scaffold" /linkage_evidence="paired-ends" CONTIG join(AYUG01090947.1:1..45000,gap(49),AYUG01090948.1:1..56717, gap(150),AYUG01090949.1:1..26386,gap(751),AYUG01090950.1:1..44990, gap(11),AYUG01090951.1:1..14528,gap(10),AYUG01090952.1:1..7764, gap(27),AYUG01090953.1:1..4229,gap(113),AYUG01090954.1:1..32388, gap(178),AYUG01090955.1:1..13529,gap(902),AYUG01090956.1:1..11006, gap(19),AYUG01090957.1:1..60961,gap(42),AYUG01090958.1:1..9922, gap(4245),AYUG01090959.1:1..122296,gap(14),AYUG01090960.1:1..6990, gap(23),AYUG01090961.1:1..631,gap(77),AYUG01090962.1:1..19037, gap(280),AYUG01090963.1:1..10307,gap(283),AYUG01090964.1:1..65506, gap(88),AYUG01090965.1:1..995,gap(13),AYUG01090966.1:1..73597, gap(1573),AYUG01090967.1:1..9718,gap(16),AYUG01090968.1:1..34391, gap(151),AYUG01090969.1:1..52615,gap(597),AYUG01090970.1:1..34587, gap(192),AYUG01090971.1:1..71648,gap(120),AYUG01090972.1:1..72450, gap(75),AYUG01090973.1:1..13310,gap(95),AYUG01090974.1:1..17697, gap(52),AYUG01090975.1:1..40326,gap(389),AYUG01090976.1:1..18982, gap(27),AYUG01090977.1:1..7078,gap(126),AYUG01090978.1:1..163566, gap(893),AYUG01090979.1:1..35542,gap(104),AYUG01090980.1:1..8892, gap(39),AYUG01090981.1:1..35178,gap(61),AYUG01090982.1:1..30002, gap(59),AYUG01090983.1:1..56353,gap(111),AYUG01090984.1:1..15108, gap(21),AYUG01090985.1:1..39143,gap(75),AYUG01090986.1:1..18038, gap(55),AYUG01090987.1:1..7342,gap(18),AYUG01090988.1:1..59552, gap(132),AYUG01090989.1:1..124321,gap(234),AYUG01090990.1:1..15928, gap(129),AYUG01090991.1:1..10118,gap(115),AYUG01090992.1:1..13934, gap(22),AYUG01090993.1:1..15953,gap(56),AYUG01090994.1:1..3916, gap(24),AYUG01090995.1:1..14614,gap(321),AYUG01090996.1:1..7246, gap(100),AYUG01090997.1:1..71453,gap(172),AYUG01090998.1:1..19568, gap(123),AYUG01090999.1:1..11466,gap(11),AYUG01091000.1:1..1554, gap(438),AYUG01091001.1:1..28454,gap(48),AYUG01091002.1:1..27281, gap(93),AYUG01091003.1:1..47348,gap(4979),AYUG01091004.1:1..20363, gap(20),AYUG01091005.1:1..5794,gap(88),AYUG01091006.1:1..20669, gap(14),AYUG01091007.1:1..26810,gap(174),AYUG01091008.1:1..16414, gap(171),AYUG01091009.1:1..49308,gap(496),AYUG01091010.1:1..22664, gap(297),AYUG01091011.1:1..19057,gap(5144),AYUG01091012.1:1..49063, gap(97),AYUG01091013.1:1..7013,gap(70),AYUG01091014.1:1..8445, gap(686),AYUG01091015.1:1..72561,gap(510),AYUG01091016.1:1..15176, gap(36),AYUG01091017.1:1..47746,gap(21),AYUG01091018.1:1..10180, gap(1050),AYUG01091019.1:1..60026,gap(142), AYUG01091020.1:1..160177,gap(27),AYUG01091021.1:1..5710,gap(13), AYUG01091022.1:1..481,gap(17),AYUG01091023.1:1..29008,gap(138), AYUG01091024.1:1..22133,gap(166),AYUG01091025.1:1..13396,gap(5417), AYUG01091026.1:1..20442,gap(63),AYUG01091027.1:1..1674,gap(491), AYUG01091028.1:1..6499,gap(81),AYUG01091029.1:1..27770,gap(1696), AYUG01091030.1:1..28278,gap(179),AYUG01091031.1:1..4272,gap(2068), AYUG01091032.1:1..5806,gap(618),AYUG01091033.1:1..12417,gap(406), AYUG01091034.1:1..8742,gap(56),AYUG01091035.1:1..7605,gap(67), AYUG01091036.1:1..3788,gap(64),AYUG01091037.1:1..21248,gap(1102), AYUG01091038.1:1..8337,gap(57),AYUG01091039.1:1..4883,gap(93), AYUG01091040.1:1..140776,gap(812),AYUG01091041.1:1..154941,gap(21), AYUG01091042.1:1..29613,gap(256),AYUG01091043.1:1..23824,gap(12), AYUG01091044.1:1..69211,gap(325),AYUG01091045.1:1..7653,gap(79), AYUG01091046.1:1..2723,gap(1256),AYUG01091047.1:1..47407,gap(61), AYUG01091048.1:1..3051,gap(55),AYUG01091049.1:1..2486,gap(362), AYUG01091050.1:1..16430,gap(1782),AYUG01091051.1:1..1759,gap(57), AYUG01091052.1:1..12375,gap(18),AYUG01091053.1:1..38895,gap(265), AYUG01091054.1:1..438,gap(765),AYUG01091055.1:1..93168,gap(1832), AYUG01091056.1:1..31140,gap(31),AYUG01091057.1:1..87100,gap(52), AYUG01091058.1:1..6615,gap(96),AYUG01091059.1:1..14974,gap(1050), AYUG01091060.1:1..42994,gap(320),AYUG01091061.1:1..33023,gap(22), AYUG01091062.1:1..20119,gap(61),AYUG01091063.1:1..19181,gap(125), AYUG01091064.1:1..15851,gap(31),AYUG01091065.1:1..38739,gap(70), AYUG01091066.1:1..94773,gap(787),AYUG01091067.1:1..67345,gap(27), AYUG01091068.1:1..1196,gap(4876),AYUG01091069.1:1..4904,gap(58), AYUG01091070.1:1..27992,gap(786),AYUG01091071.1:1..10512,gap(26), AYUG01091072.1:1..20001,gap(134),AYUG01091073.1:1..6936,gap(939), AYUG01091074.1:1..14399,gap(486),AYUG01091075.1:1..4124,gap(69), AYUG01091076.1:1..6726,gap(1260),AYUG01091077.1:1..646,gap(691), AYUG01091078.1:1..39839,gap(30),AYUG01091079.1:1..1083,gap(1307), AYUG01091080.1:1..31368,gap(85),AYUG01091081.1:1..39180,gap(152), AYUG01091082.1:1..13247,gap(338),AYUG01091083.1:1..43197,gap(150), AYUG01091084.1:1..38206,gap(101),AYUG01091085.1:1..22186,gap(281), AYUG01091086.1:1..8773,gap(273),AYUG01091087.1:1..37104,gap(10), AYUG01091088.1:1..2505,gap(130),AYUG01091089.1:1..65487,gap(208), AYUG01091090.1:1..8446,gap(13),AYUG01091091.1:1..866,gap(1843), AYUG01091092.1:1..6501,gap(116),AYUG01091093.1:1..6414,gap(429), AYUG01091094.1:1..26400,gap(64),AYUG01091095.1:1..3384,gap(145), AYUG01091096.1:1..9550,gap(330),AYUG01091097.1:1..14066,gap(25), AYUG01091098.1:1..31545,gap(46),AYUG01091099.1:1..40798,gap(146), AYUG01091100.1:1..5861,gap(22),AYUG01091101.1:1..11997) //